private void setCurationSegmentBeginEnd()
throws UIMAException, ClassNotFoundException, IOException {
JCas jCas = repository.readAnnotationCas(bModel.getDocument(), bModel.getUser());
final int sentenceAddress =
getAddr(
selectSentenceAt(jCas, bModel.getSentenceBeginOffset(), bModel.getSentenceEndOffset()));
final Sentence sentence = selectByAddr(jCas, Sentence.class, sentenceAddress);
List<Sentence> followingSentences =
selectFollowing(jCas, Sentence.class, sentence, bModel.getPreferences().getWindowSize());
// Check also, when getting the last sentence address in the display window, if this is the
// last sentence or the ONLY sentence in the document
Sentence lastSentenceAddressInDisplayWindow =
followingSentences.size() == 0
? sentence
: followingSentences.get(followingSentences.size() - 1);
curationSegment.setBegin(sentence.getBegin());
curationSegment.setEnd(lastSentenceAddressInDisplayWindow.getEnd());
}
private void loadDocumentAction()
throws UIMAException, ClassNotFoundException, IOException, BratAnnotationException {
String username = SecurityContextHolder.getContext().getAuthentication().getName();
User logedInUser =
userRepository.get(SecurityContextHolder.getContext().getAuthentication().getName());
bModel.setUser(logedInUser);
JCas jCas = null;
try {
AnnotationDocument logedInUserAnnotationDocument =
repository.getAnnotationDocument(bModel.getDocument(), logedInUser);
jCas = repository.readAnnotationCas(logedInUserAnnotationDocument);
} catch (IOException e) {
throw e;
}
// Get information to be populated to bratAnnotatorModel from the JCAS of the logged in user
//
catch (DataRetrievalFailureException e) {
jCas = repository.readAnnotationCas(bModel.getDocument(), logedInUser);
// This is the auto annotation, save it under CORRECTION_USER, Only if it is not created
// by another annotater
if (!repository.existsCorrectionCas(bModel.getDocument())) {
repository.writeCorrectionCas(jCas, bModel.getDocument(), logedInUser);
}
} catch (NoResultException e) {
jCas = repository.readAnnotationCas(bModel.getDocument(), logedInUser);
// This is the auto annotation, save it under CORRECTION_USER, Only if it is not created
// by another annotater
if (!repository.existsCorrectionCas(bModel.getDocument())) {
repository.writeCorrectionCas(jCas, bModel.getDocument(), logedInUser);
}
}
// (Re)initialize brat model after potential creating / upgrading CAS
bModel.initForDocument(jCas);
// Load user preferences
PreferencesUtil.setAnnotationPreference(
username, repository, annotationService, bModel, Mode.AUTOMATION);
// if project is changed, reset some project specific settings
if (currentprojectId != bModel.getProject().getId()) {
bModel.initForProject();
}
currentprojectId = bModel.getProject().getId();
currentDocumentId = bModel.getDocument().getId();
LOG.debug(
"Configured BratAnnotatorModel for user ["
+ bModel.getUser()
+ "] f:["
+ bModel.getFirstSentenceAddress()
+ "] l:["
+ bModel.getLastSentenceAddress()
+ "] s:["
+ bModel.getSentenceAddress()
+ "]");
}
