/** Create the panel. */
public GuilncLocation() {
setLayout(null);
scrollPane = new JScrollPaneData();
scrollPane.setBounds(12, 51, 572, 385);
add(scrollPane);
JButton btnAddfile = new JButton("addFile");
btnAddfile.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
List<String> lsFile = guiFileOpen.openLsFileName("", "");
List<String[]> lsFile2Result = new ArrayList<String[]>();
for (String fileName : lsFile) {
String[] tmpResult = new String[2];
tmpResult[0] = fileName;
tmpResult[1] = FileOperate.changeFileSuffix(fileName, "_lncLocation", null);
lsFile2Result.add(tmpResult);
}
scrollPane.addItemLs(lsFile2Result);
}
});
btnAddfile.setBounds(596, 51, 107, 25);
add(btnAddfile);
JButton btnDelfile = new JButton("delFile");
btnDelfile.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
scrollPane.deleteSelRows();
}
});
btnDelfile.setBounds(596, 88, 107, 25);
add(btnDelfile);
guiLayeredPaneSpeciesVersionGff = new GuiLayeredPaneSpeciesVersionGff();
guiLayeredPaneSpeciesVersionGff.setBounds(596, 125, 214, 137);
add(guiLayeredPaneSpeciesVersionGff);
JButton btnRun = new JButton("Run");
btnRun.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
lncSiteInfo.setSpecies(guiLayeredPaneSpeciesVersionGff.getSelectSpecies());
int colNum = (Integer) spinner.getValue() - 1;
int colStart = 0, colEnd = 0;
if (rdbtnByloc.isSelected()) {
colStart = (Integer) spinStart.getValue() - 1;
colEnd = (Integer) spinEnd.getValue() - 1;
}
try {
lncSiteInfo.setUpDownExtend(Integer.parseInt(txtUpDownDistance.getText()));
} catch (Exception e2) {
// TODO: handle exception
}
for (String[] file2Result : scrollPane.getLsDataInfo()) {
List<List<String>> lsInfo = ExcelTxtRead.readLsExcelTxtls(file2Result[0], 1);
List<LncInfo> lsTmpResult = null;
if (rdbtnByloc.isSelected()) {
lncSiteInfo.setLsLncAligns(lsInfo, colNum, colStart, colEnd);
lsTmpResult = lncSiteInfo.findLncInfoByLoc();
} else {
lncSiteInfo.setLsLncName(lsInfo, colNum);
lsTmpResult = lncSiteInfo.findLncInfoByName();
}
TxtReadandWrite txtWrite = new TxtReadandWrite(file2Result[1], true);
txtWrite.writefileln(LncInfo.getTitle());
for (LncInfo lncInfo : lsTmpResult) {
txtWrite.writefileln(lncInfo.toString());
}
txtWrite.close();
}
}
});
btnRun.setBounds(596, 411, 107, 25);
add(btnRun);
spinner = new JSpinner();
spinner.setBounds(596, 379, 67, 20);
spinner.setValue(1);
add(spinner);
lblLncidcol = new JLabel("LncIDCol");
lblLncidcol.setBounds(596, 358, 92, 15);
add(lblLncidcol);
rdbtnByname = new JRadioButton("ByName");
rdbtnByname.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
setRdbtn(true);
}
});
rdbtnByname.setSelected(true);
rdbtnByname.setBounds(594, 271, 93, 26);
add(rdbtnByname);
rdbtnByloc = new JRadioButton("ByLoc");
rdbtnByloc.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
setRdbtn(false);
}
});
rdbtnByloc.setBounds(701, 271, 81, 26);
add(rdbtnByloc);
spinStart = new JSpinner();
spinStart.setBounds(707, 377, 59, 22);
add(spinStart);
lblStartcol = new JLabel("StartCol");
lblStartcol.setBounds(707, 356, 59, 18);
add(lblStartcol);
spinEnd = new JSpinner();
spinEnd.setBounds(778, 377, 52, 22);
add(spinEnd);
lblEndcol = new JLabel("EndCol");
lblEndcol.setBounds(778, 356, 59, 18);
add(lblEndcol);
lblDistancetoupdowngene = new JLabel("DistanceToUpDownGene");
lblDistancetoupdowngene.setBounds(602, 305, 208, 18);
add(lblDistancetoupdowngene);
txtUpDownDistance = new JTextField();
txtUpDownDistance.setText("10000");
txtUpDownDistance.setBounds(599, 324, 67, 22);
add(txtUpDownDistance);
txtUpDownDistance.setColumns(10);
initial();
}
private void initial() {
scrollPane.setTitle(new String[] {"FileName", "ResultFileName"});
btnGroup.add(rdbtnByloc);
btnGroup.add(rdbtnByname);
setRdbtn(true);
}