Пример #1
0
  private void handlePropertySubclassOf(OntProperty p) {

    List<RDFNode> list = p.listPropertyValues(RDFS.subClassOf).toList();
    for (RDFNode node : list) {
      if (!node.canAs(Resource.class)) continue;
      Resource resource = node.asResource();
      Resource onPropertyValue = resource.getPropertyResourceValue(OWL.onProperty);
      if (!RDFS.domain.equals(onPropertyValue)) continue;
      Resource someValuesFrom = resource.getPropertyResourceValue(OWL.someValuesFrom);
      if (someValuesFrom == null) continue;
      String uri = someValuesFrom.getURI();
      if (uri != null) {
        OntResource type = someValuesFrom.as(OntResource.class);
        addField(type, p, null);
      } else {
        Resource unionList = someValuesFrom.getPropertyResourceValue(OWL.unionOf);
        while (unionList != null) {
          Resource first = unionList.getPropertyResourceValue(RDF.first);
          if (first != null) {
            String typeURI = first.getURI();
            if (typeURI == null) {
              logger.warn(
                  "Cannot handle union that contains an anonymous class in the domain of "
                      + p.getURI());
            } else {
              OntResource type = first.as(OntResource.class);
              addField(type, p, null);
            }
          }
          unionList = unionList.getPropertyResourceValue(RDF.rest);
          if (RDF.nil.equals(unionList)) {
            break;
          }
        }
      }
    }
  }
Пример #2
0
  private List<OntResource> getEnumeratedIndividuals(OntClass type) {
    Resource equivalentClass = type.getPropertyResourceValue(OWL.equivalentClass);
    if (equivalentClass == null) {
      return null;
    }
    Resource oneOf = equivalentClass.getPropertyResourceValue(OWL.oneOf);
    if (oneOf == null) return null;

    List<RDFNode> nodeList = oneOf.as(RDFList.class).asJavaList();

    List<OntResource> result = new ArrayList<OntResource>();

    for (RDFNode node : nodeList) {
      result.add(node.as(OntResource.class));
    }

    return result;
  }
  @Test
  public void testConversion() throws Exception {
    status.put(DepositField.sourcePath.name(), "src/test/resources/paths/valid-bag");
    status.put(DepositField.fileName.name(), "Test File");
    status.put(
        DepositField.extras.name(), "{\"accessionNumber\" : \"123456\", \"mediaId\" : \"789\"}");

    when(stages.getStagedURI(any(URI.class)))
        .thenAnswer(
            new Answer<URI>() {
              public URI answer(InvocationOnMock invocation) throws URISyntaxException {
                Object[] args = invocation.getArguments();
                URI uri = (URI) args[0];
                String path = uri.toString();
                int index = path.lastIndexOf("/paths");
                path = path.substring(index + 6);

                return new URI("tag:" + path);
              }
            });

    job.run();

    Model model = job.getReadOnlyModel();
    Bag depositBag = model.getBag(job.getDepositPID().getURI());

    assertEquals(depositBag.size(), 1);

    Bag bagFolder = model.getBag((Resource) depositBag.iterator().next());
    assertEquals(
        "Bag folder label was not set",
        "Test File",
        bagFolder.getProperty(dprop(model, label)).getString());
    assertEquals(
        "Content model was not set",
        CONTAINER.toString(),
        bagFolder.getPropertyResourceValue(fprop(model, hasModel)).getURI());

    Resource folder = (Resource) bagFolder.iterator().next();

    assertEquals(
        "Folder label was not set", folder.getProperty(dprop(model, label)).getString(), "test");
    assertEquals(
        "Content model was not set",
        CONTAINER.toString(),
        folder.getPropertyResourceValue(fprop(model, hasModel)).getURI());

    Bag childrenBag = model.getBag(folder.getURI());

    assertEquals(childrenBag.size(), 2);

    // Put children into a map since we can't guarantee order from jena
    Map<String, Resource> children = new HashMap<>(2);
    NodeIterator childIt = childrenBag.iterator();
    while (childIt.hasNext()) {
      Resource file = (Resource) childIt.next();
      children.put(file.getProperty(dprop(model, label)).getString(), file);
    }

    ArgumentCaptor<String> filePathCaptor = ArgumentCaptor.forClass(String.class);
    verify(depositStatusFactory, times(2)).addManifest(anyString(), filePathCaptor.capture());
    List<String> capturedFilePaths =
        Arrays.asList("tag:/valid-bag/bagit.txt", "tag:/valid-bag/manifest-md5.txt");
    assertEquals(capturedFilePaths, filePathCaptor.getAllValues());

    Resource file = children.get("lorem.txt");
    assertEquals(
        "Content model was not set",
        SIMPLE.toString(),
        file.getPropertyResourceValue(fprop(model, hasModel)).getURI());
    assertEquals(
        "Checksum was not set",
        "fa5c89f3c88b81bfd5e821b0316569af",
        file.getProperty(dprop(model, md5sum)).getString());
    assertEquals(
        "File location not set",
        "tag:/valid-bag/data/test/lorem.txt",
        file.getProperty(dprop(model, stagingLocation)).getString());

    Resource file2 = children.get("ipsum.txt");
    assertEquals(
        "Content model was not set",
        SIMPLE.toString(),
        file2.getPropertyResourceValue(fprop(model, hasModel)).getURI());
    assertEquals(
        "Checksum was not set",
        "e78f5438b48b39bcbdea61b73679449d",
        file2.getProperty(dprop(model, md5sum)).getString());
    assertEquals(
        "File location not set",
        "tag:/valid-bag/data/test/ipsum.txt",
        file2.getProperty(dprop(model, stagingLocation)).getString());

    File modsFile =
        new File(job.getDescriptionDir(), new PID(bagFolder.getURI()).getUUID() + ".xml");
    assertTrue(modsFile.exists());

    Set<String> cleanupSet = new HashSet<>();
    StmtIterator it = depositBag.listProperties(dprop(model, cleanupLocation));
    while (it.hasNext()) {
      Statement stmt = it.nextStatement();
      cleanupSet.add(stmt.getString());
    }

    assertEquals("Incorrect number of objects identified for cleanup", 3, cleanupSet.size());
    assertTrue("Cleanup of bag not set", cleanupSet.contains("tag:/valid-bag/"));
    assertTrue("Cleanup of manifest not set", cleanupSet.contains("tag:/valid-bag/bagit.txt"));
    assertTrue(
        "Cleanup of manifest not set", cleanupSet.contains("tag:/valid-bag/manifest-md5.txt"));
  }