private void handlePropertySubclassOf(OntProperty p) {
List<RDFNode> list = p.listPropertyValues(RDFS.subClassOf).toList();
for (RDFNode node : list) {
if (!node.canAs(Resource.class)) continue;
Resource resource = node.asResource();
Resource onPropertyValue = resource.getPropertyResourceValue(OWL.onProperty);
if (!RDFS.domain.equals(onPropertyValue)) continue;
Resource someValuesFrom = resource.getPropertyResourceValue(OWL.someValuesFrom);
if (someValuesFrom == null) continue;
String uri = someValuesFrom.getURI();
if (uri != null) {
OntResource type = someValuesFrom.as(OntResource.class);
addField(type, p, null);
} else {
Resource unionList = someValuesFrom.getPropertyResourceValue(OWL.unionOf);
while (unionList != null) {
Resource first = unionList.getPropertyResourceValue(RDF.first);
if (first != null) {
String typeURI = first.getURI();
if (typeURI == null) {
logger.warn(
"Cannot handle union that contains an anonymous class in the domain of "
+ p.getURI());
} else {
OntResource type = first.as(OntResource.class);
addField(type, p, null);
}
}
unionList = unionList.getPropertyResourceValue(RDF.rest);
if (RDF.nil.equals(unionList)) {
break;
}
}
}
}
}
private List<OntResource> getEnumeratedIndividuals(OntClass type) {
Resource equivalentClass = type.getPropertyResourceValue(OWL.equivalentClass);
if (equivalentClass == null) {
return null;
}
Resource oneOf = equivalentClass.getPropertyResourceValue(OWL.oneOf);
if (oneOf == null) return null;
List<RDFNode> nodeList = oneOf.as(RDFList.class).asJavaList();
List<OntResource> result = new ArrayList<OntResource>();
for (RDFNode node : nodeList) {
result.add(node.as(OntResource.class));
}
return result;
}
@Test
public void testConversion() throws Exception {
status.put(DepositField.sourcePath.name(), "src/test/resources/paths/valid-bag");
status.put(DepositField.fileName.name(), "Test File");
status.put(
DepositField.extras.name(), "{\"accessionNumber\" : \"123456\", \"mediaId\" : \"789\"}");
when(stages.getStagedURI(any(URI.class)))
.thenAnswer(
new Answer<URI>() {
public URI answer(InvocationOnMock invocation) throws URISyntaxException {
Object[] args = invocation.getArguments();
URI uri = (URI) args[0];
String path = uri.toString();
int index = path.lastIndexOf("/paths");
path = path.substring(index + 6);
return new URI("tag:" + path);
}
});
job.run();
Model model = job.getReadOnlyModel();
Bag depositBag = model.getBag(job.getDepositPID().getURI());
assertEquals(depositBag.size(), 1);
Bag bagFolder = model.getBag((Resource) depositBag.iterator().next());
assertEquals(
"Bag folder label was not set",
"Test File",
bagFolder.getProperty(dprop(model, label)).getString());
assertEquals(
"Content model was not set",
CONTAINER.toString(),
bagFolder.getPropertyResourceValue(fprop(model, hasModel)).getURI());
Resource folder = (Resource) bagFolder.iterator().next();
assertEquals(
"Folder label was not set", folder.getProperty(dprop(model, label)).getString(), "test");
assertEquals(
"Content model was not set",
CONTAINER.toString(),
folder.getPropertyResourceValue(fprop(model, hasModel)).getURI());
Bag childrenBag = model.getBag(folder.getURI());
assertEquals(childrenBag.size(), 2);
// Put children into a map since we can't guarantee order from jena
Map<String, Resource> children = new HashMap<>(2);
NodeIterator childIt = childrenBag.iterator();
while (childIt.hasNext()) {
Resource file = (Resource) childIt.next();
children.put(file.getProperty(dprop(model, label)).getString(), file);
}
ArgumentCaptor<String> filePathCaptor = ArgumentCaptor.forClass(String.class);
verify(depositStatusFactory, times(2)).addManifest(anyString(), filePathCaptor.capture());
List<String> capturedFilePaths =
Arrays.asList("tag:/valid-bag/bagit.txt", "tag:/valid-bag/manifest-md5.txt");
assertEquals(capturedFilePaths, filePathCaptor.getAllValues());
Resource file = children.get("lorem.txt");
assertEquals(
"Content model was not set",
SIMPLE.toString(),
file.getPropertyResourceValue(fprop(model, hasModel)).getURI());
assertEquals(
"Checksum was not set",
"fa5c89f3c88b81bfd5e821b0316569af",
file.getProperty(dprop(model, md5sum)).getString());
assertEquals(
"File location not set",
"tag:/valid-bag/data/test/lorem.txt",
file.getProperty(dprop(model, stagingLocation)).getString());
Resource file2 = children.get("ipsum.txt");
assertEquals(
"Content model was not set",
SIMPLE.toString(),
file2.getPropertyResourceValue(fprop(model, hasModel)).getURI());
assertEquals(
"Checksum was not set",
"e78f5438b48b39bcbdea61b73679449d",
file2.getProperty(dprop(model, md5sum)).getString());
assertEquals(
"File location not set",
"tag:/valid-bag/data/test/ipsum.txt",
file2.getProperty(dprop(model, stagingLocation)).getString());
File modsFile =
new File(job.getDescriptionDir(), new PID(bagFolder.getURI()).getUUID() + ".xml");
assertTrue(modsFile.exists());
Set<String> cleanupSet = new HashSet<>();
StmtIterator it = depositBag.listProperties(dprop(model, cleanupLocation));
while (it.hasNext()) {
Statement stmt = it.nextStatement();
cleanupSet.add(stmt.getString());
}
assertEquals("Incorrect number of objects identified for cleanup", 3, cleanupSet.size());
assertTrue("Cleanup of bag not set", cleanupSet.contains("tag:/valid-bag/"));
assertTrue("Cleanup of manifest not set", cleanupSet.contains("tag:/valid-bag/bagit.txt"));
assertTrue(
"Cleanup of manifest not set", cleanupSet.contains("tag:/valid-bag/manifest-md5.txt"));
}