private Frame createFrame(OntClass type) {
if (manager.isStandardDatatype(type.getNameSpace())) {
manager.getDatatypeByUri(type.getURI());
return null;
}
if (manager.isStandard(type.getNameSpace())) {
return null;
}
String uri = type.getURI();
if (uri == null) {
throw new RuntimeException("URI of type is not defined");
}
Frame frame = manager.getFrameByUri(uri);
if (frame != null) {
return frame;
}
OntClass elemType = manager.getElementType(type);
if (elemType != null) {
String elemURI = elemType.getURI();
ListType listType = manager.getListTypeByElementUri(elemURI);
if (listType == null) {
RdfType elemRdfType = manager.getTypeByURI(elemURI);
if (elemRdfType == null) {
elemRdfType = createFrame(elemType);
}
listType = new ListType(manager, type, elemRdfType);
manager.add(listType);
}
return null;
}
List<OntResource> individuals = getEnumeratedIndividuals(type);
if (individuals == null) {
frame = new Frame(manager, type);
} else {
Enumeration enumFrame = new Enumeration(manager, type);
frame = enumFrame;
for (OntResource item : individuals) {
NamedIndividual value = new NamedIndividual(item);
enumFrame.add(value);
}
}
manager.add(frame);
return frame;
}
/**
* Creates a XML file that will contain the specification encoding which property should be used
* to identify a particular class
*/
private void savePropertyFile() {
// Creating XML file corresponding to this class specification:
Document doc = new Document();
doc.addContent(new Comment("Specification for the class " + className));
Element root = new Element(className);
Element labelElmt = new Element(Lexicon.CLASS_LABEL);
Collection<Element> labelPartElmtList = new ArrayList<Element>();
// Create the "class name" part of the label (e.g. "the project" Policygrid)
Element classNameLabelPartElmt = new Element(Lexicon.CLASS_LABEL_PART);
classNameLabelPartElmt.setAttribute(Lexicon.LABEL_PART_TYPE, Lexicon.LITERAL_LABEL_PART_TYPE);
classNameLabelPartElmt.addContent("the " + className.toLowerCase() + " ");
labelPartElmtList.add(classNameLabelPartElmt);
// Create the "label used as property" part of the label (e.g. the project "Policygrid")
Element propLabelPartElmt = new Element(Lexicon.CLASS_LABEL_PART);
labelPartElmtList.add(propLabelPartElmt);
// Direct property:
if (directPropertyTypeButton.isSelected()) {
propLabelPartElmt.setAttribute(
Lexicon.LABEL_PART_TYPE, Lexicon.DIRECT_PROPERTY_LABEL_PART_TYPE);
if (propertyList.getSelectedValue() != null
&& propertyList.getSelectedValue() instanceof OntPropertyModel) {
String selectedProp =
((OntPropertyModel) propertyList.getSelectedValue()).getOntProperty().toString();
JOptionPane.showMessageDialog(
parent,
"The property used to identify this class is " + selectedProp,
"Saving Class Spec",
JOptionPane.INFORMATION_MESSAGE);
propLabelPartElmt.addContent(selectedProp);
} else {
JOptionPane.showMessageDialog(
parent,
"Property selected is invalid. Please select another property.",
"Missing Parameters",
JOptionPane.ERROR_MESSAGE);
return;
}
directPropertyPane.setVisible(true);
indirectPropertyPanel.setVisible(false);
// Indirect property:
} else if (indirectPropertyTypeButton.isSelected()) {
propLabelPartElmt.setAttribute(
Lexicon.LABEL_PART_TYPE, Lexicon.INDIRECT_PROPERTY_LABEL_PART_TYPE);
boolean classIsSubject = classSubjectPropCheckBox.isSelected();
// Setting attributes:
if (!"".equals(linkingPropField.getText()) && !"".equals(relatedClassPropField.getText())) {
propLabelPartElmt.setAttribute(
Lexicon.CLASS_SUBJECT, (new Boolean(classIsSubject).toString()));
propLabelPartElmt.setAttribute(Lexicon.PROPERTY_LINK, (linkingPropField.getText()));
propLabelPartElmt.addContent(relatedClassPropField.getText());
} else {
JOptionPane.showMessageDialog(
parent, "Please fill in both fields.", "Missing Parameters", JOptionPane.ERROR_MESSAGE);
return;
}
JOptionPane.showMessageDialog(
parent,
"Indirect property: \n linking Prop: "
+ linkingPropField.getText()
+ "\n This class is the Subject of this property: "
+ classIsSubject
+ "\n Related class property: "
+ relatedClassPropField.getText());
}
// Adding content of XML file:
for (Element labelPartElmt : labelPartElmtList) {
labelElmt.addContent(labelPartElmt);
}
root.addContent(labelElmt);
doc.setRootElement(root);
// Writing file:
try {
// TODO: need to use the URI in the xml file name (or in sub directory? --> one subdir per
// namespace? --> need to encode URI special characters, or just use ontology file name)
// Checking that the directory already exit, if not, create it:
File directory =
new File(
Lexicon.CLASS_SPEC_PATH
+ URLEncoder.encode(ontClass.getNameSpace(), "ISO-8859-1")
+ "/");
if (!directory.isDirectory()) {
directory.mkdir();
}
FileWriter f = new FileWriter(directory.getPath() + "/" + className + ".xml");
PrintWriter fw = new PrintWriter(f);
XMLOutputter xml = new XMLOutputter(Format.getPrettyFormat());
fw.print(xml.outputString(doc));
fw.close();
f.close();
} catch (IOException e1) {
e1.printStackTrace();
System.out.println("Error when writting spec class XML file");
}
}
@Override
public UpdateContainer doIt(VWorkspace vWorkspace) throws CommandException {
OntologyManager ontMgr = vWorkspace.getWorkspace().getOntologyManager();
JSONArray classesList = new JSONArray();
JSONArray classesMap = new JSONArray();
JSONArray propertiesList = new JSONArray();
JSONArray propertiesMap = new JSONArray();
Map<String, String> prefixMap = vWorkspace.getWorkspace().getOntologyManager().getPrefixMap();
ExtendedIterator<OntClass> iter = ontMgr.getOntModel().listNamedClasses();
// ExtendedIterator<DatatypeProperty> propsIter = ontMgr.getOntModel()
// .listDatatypeProperties();
ExtendedIterator<OntProperty> propsIter = ontMgr.getOntModel().listAllOntProperties();
final JSONObject outputObj = new JSONObject();
try {
while (iter.hasNext()) {
OntClass cls = iter.next();
String pr = prefixMap.get(cls.getNameSpace());
String classLabel = cls.getLocalName();
// if (cls.getLabel(null) != null && !cls.getLabel(null).equals(""))
// classLabel = cls.getLabel(null);
String clsStr = (pr != null && !pr.equals("")) ? pr + ":" + classLabel : classLabel;
classesList.put(clsStr);
JSONObject classKey = new JSONObject();
classKey.put(clsStr, cls.getURI());
classesMap.put(classKey);
}
while (propsIter.hasNext()) {
// DatatypeProperty prop = propsIter.next();
OntProperty prop = propsIter.next();
if (prop.isObjectProperty() && !prop.isDatatypeProperty()) continue;
String pr = prefixMap.get(prop.getNameSpace());
String propLabel = prop.getLocalName();
// if (prop.getLabel(null) != null && !prop.getLabel(null).equals(""))
// propLabel = prop.getLabel(null);
String propStr = (pr != null && !pr.equals("")) ? pr + ":" + propLabel : propLabel;
propertiesList.put(propStr);
JSONObject propKey = new JSONObject();
propKey.put(propStr, prop.getURI());
propertiesMap.put(propKey);
}
// Populate the JSON object that will hold everything in output
outputObj.put(JsonKeys.classList.name(), classesList);
outputObj.put(JsonKeys.classMap.name(), classesMap);
outputObj.put(JsonKeys.propertyList.name(), propertiesList);
outputObj.put(JsonKeys.propertyMap.name(), propertiesMap);
} catch (JSONException e) {
logger.error("Error populating JSON!");
}
UpdateContainer upd =
new UpdateContainer(
new AbstractUpdate() {
@Override
public void generateJson(String prefix, PrintWriter pw, VWorkspace vWorkspace) {
pw.print(outputObj.toString());
}
});
return upd;
}
