@Test
public void testTwoInclude() throws Exception {
HttpGet httpGet =
new HttpGet(
"http://localhost:"
+ ourPort
+ "/Patient?name=Hello&_include=foo&_include=bar&_pretty=true");
HttpResponse status = ourClient.execute(httpGet);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
ourLog.info(responseContent);
assertEquals(200, status.getStatusLine().getStatusCode());
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
assertEquals(1, bundle.size());
Patient p = bundle.getResources(Patient.class).get(0);
assertEquals(2, p.getName().size());
assertEquals("Hello", p.getId().getIdPart());
Set<String> values = new HashSet<String>();
values.add(p.getName().get(0).getFamilyFirstRep().getValue());
values.add(p.getName().get(1).getFamilyFirstRep().getValue());
assertThat(values, containsInAnyOrder("foo", "bar"));
}
@Test
public void testServerReturnsWrongVersionForDstu2() throws Exception {
Conformance conf = new Conformance();
conf.setFhirVersion("0.80");
String msg = myCtx.newXmlParser().encodeResourceToString(conf);
ArgumentCaptor<HttpUriRequest> capt = ArgumentCaptor.forClass(HttpUriRequest.class);
when(myHttpResponse.getStatusLine())
.thenReturn(new BasicStatusLine(new ProtocolVersion("HTTP", 1, 1), 200, "OK"));
when(myHttpResponse.getEntity().getContentType())
.thenReturn(new BasicHeader("content-type", Constants.CT_FHIR_XML + "; charset=UTF-8"));
when(myHttpResponse.getEntity().getContent())
.thenReturn(new ReaderInputStream(new StringReader(msg), Charset.forName("UTF-8")));
when(myHttpClient.execute(capt.capture())).thenReturn(myHttpResponse);
myCtx.getRestfulClientFactory().setServerValidationMode(ServerValidationModeEnum.ONCE);
try {
myCtx.newRestfulGenericClient("http://foo").read(new UriDt("http://foo/Patient/123"));
fail();
} catch (FhirClientInappropriateForServerException e) {
String out = e.toString();
String want =
"The server at base URL \"http://foo/metadata\" returned a conformance statement indicating that it supports FHIR version \"0.80\" which corresponds to DSTU1, but this client is configured to use DSTU2 (via the FhirContext)";
ourLog.info(out);
ourLog.info(want);
assertThat(out, containsString(want));
}
}
@Test
public void testSchemaBundleValidatorFails() throws IOException {
String res =
IOUtils.toString(getClass().getClassLoader().getResourceAsStream("bundle-example.json"));
Bundle b = ourCtx.newJsonParser().parseBundle(res);
FhirValidator val = createFhirValidator();
ValidationResult validationResult = val.validateWithResult(b);
assertTrue(validationResult.isSuccessful());
MedicationOrder p = (MedicationOrder) b.getEntries().get(0).getResource();
TimingDt timing = new TimingDt();
timing.getRepeat().setDuration(123);
timing.getRepeat().setDurationUnits((UnitsOfTimeEnum) null);
p.getDosageInstructionFirstRep().setTiming(timing);
validationResult = val.validateWithResult(b);
assertFalse(validationResult.isSuccessful());
OperationOutcome operationOutcome = (OperationOutcome) validationResult.toOperationOutcome();
String encoded =
ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(operationOutcome);
ourLog.info(encoded);
assertThat(encoded, containsString("tim-1:"));
}
@Test
public void testUpdate() throws Exception {
Patient patient = new Patient();
patient.addIdentifier().setValue("002");
HttpPut httpPost = new HttpPut("http://localhost:" + ourPort + "/Patient/001");
httpPost.setEntity(
new StringEntity(
ourCtx.newXmlParser().encodeResourceToString(patient),
ContentType.create(Constants.CT_FHIR_XML, "UTF-8")));
HttpResponse status = ourClient.execute(httpPost);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
ourLog.info("Response was:\n{}", responseContent);
OperationOutcome oo =
ourCtx.newXmlParser().parseResource(OperationOutcome.class, responseContent);
assertEquals("OODETAILS", oo.getIssueFirstRep().getDetails().getValue());
assertEquals(200, status.getStatusLine().getStatusCode());
assertEquals(
"http://localhost:" + ourPort + "/Patient/001/_history/002",
status.getFirstHeader("location").getValue());
assertEquals(
"http://localhost:" + ourPort + "/Patient/001/_history/002",
status.getFirstHeader("content-location").getValue());
}
@SuppressWarnings("deprecation")
@Test
public void testSchemaResourceValidator() throws IOException {
String res =
IOUtils.toString(
getClass().getClassLoader().getResourceAsStream("patient-example-dicom.json"));
Patient p = ourCtx.newJsonParser().parseResource(Patient.class, res);
ourLog.info(ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(p));
FhirValidator val = ourCtx.newValidator();
val.setValidateAgainstStandardSchema(true);
val.setValidateAgainstStandardSchematron(false);
val.validate(p);
p.getAnimal().getBreed().setText("The Breed");
try {
val.validate(p);
fail();
} catch (ValidationFailureException e) {
OperationOutcome operationOutcome = (OperationOutcome) e.getOperationOutcome();
ourLog.info(
ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(operationOutcome));
assertEquals(1, operationOutcome.getIssue().size());
assertThat(
operationOutcome.getIssueFirstRep().getDetailsElement().getValue(),
containsString("cvc-complex-type"));
}
}
@Test
public void testUpdateWithTagWithSchemeAndLabel() throws Exception {
DiagnosticReport dr = new DiagnosticReport();
dr.setId("001");
dr.addCodedDiagnosis().addCoding().setCode("AAA");
HttpPut httpPost = new HttpPut("http://localhost:" + ourPort + "/DiagnosticReport/001");
httpPost.addHeader("Category", "Dog; scheme=\"http://foo\"; label=\"aaaa\"");
httpPost.setEntity(
new StringEntity(
ourCtx.newXmlParser().encodeResourceToString(dr),
ContentType.create(Constants.CT_FHIR_XML, "UTF-8")));
CloseableHttpResponse status = ourClient.execute(httpPost);
assertEquals(1, ourReportProvider.getLastTags().size());
assertEquals(new Tag("http://foo", "Dog", "aaaa"), ourReportProvider.getLastTags().get(0));
IOUtils.closeQuietly(status.getEntity().getContent());
httpPost = new HttpPut("http://localhost:" + ourPort + "/DiagnosticReport/001");
httpPost.addHeader("Category", "Dog; scheme=\"http://foo\"; label=\"aaaa\"; ");
httpPost.setEntity(
new StringEntity(
ourCtx.newXmlParser().encodeResourceToString(dr),
ContentType.create(Constants.CT_FHIR_XML, "UTF-8")));
status = ourClient.execute(httpPost);
IOUtils.closeQuietly(status.getEntity().getContent());
assertEquals(1, ourReportProvider.getLastTags().size());
assertEquals(new Tag("http://foo", "Dog", "aaaa"), ourReportProvider.getLastTags().get(0));
}
@Test
public void testSchematronResourceValidator() throws IOException {
String res =
IOUtils.toString(
getClass().getClassLoader().getResourceAsStream("patient-example-dicom.json"));
Patient p = ourCtx.newJsonParser().parseResource(Patient.class, res);
FhirValidator val = ourCtx.newValidator();
val.setValidateAgainstStandardSchema(false);
val.setValidateAgainstStandardSchematron(true);
ValidationResult validationResult = val.validateWithResult(p);
assertTrue(validationResult.isSuccessful());
p.getTelecomFirstRep().setValue("123-4567");
validationResult = val.validateWithResult(p);
assertFalse(validationResult.isSuccessful());
OperationOutcome operationOutcome = (OperationOutcome) validationResult.toOperationOutcome();
ourLog.info(
ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(operationOutcome));
assertEquals(1, operationOutcome.getIssue().size());
assertThat(operationOutcome.getIssueFirstRep().getDiagnostics(), containsString("cpt-2:"));
p.getTelecomFirstRep().setSystem(ContactPointSystemEnum.EMAIL);
validationResult = val.validateWithResult(p);
assertTrue(validationResult.isSuccessful());
}
/** See issue #50 */
@Test
public void testOutOfBoundsDate() {
Patient p = new Patient();
p.setBirthDate(new DateDt("2000-15-31"));
String encoded = ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(p);
ourLog.info(encoded);
assertThat(encoded, StringContains.containsString("2000-15-31"));
p = ourCtx.newXmlParser().parseResource(Patient.class, encoded);
assertEquals("2000-15-31", p.getBirthDateElement().getValueAsString());
assertEquals("2001-03-31", new SimpleDateFormat("yyyy-MM-dd").format(p.getBirthDate()));
ValidationResult result = ourCtx.newValidator().validateWithResult(p);
String resultString =
ourCtx
.newXmlParser()
.setPrettyPrint(true)
.encodeResourceToString(result.toOperationOutcome());
ourLog.info(resultString);
assertEquals(2, ((OperationOutcome) result.toOperationOutcome()).getIssue().size());
assertThat(resultString, StringContains.containsString("2000-15-31"));
}
@Test
public void testTransaction() throws Exception {
String retVal = ourCtx.newXmlParser().encodeBundleToString(new Bundle());
ArgumentCaptor<HttpUriRequest> capt = ArgumentCaptor.forClass(HttpUriRequest.class);
when(ourHttpClient.execute(capt.capture())).thenReturn(ourHttpResponse);
when(ourHttpResponse.getStatusLine())
.thenReturn(new BasicStatusLine(new ProtocolVersion("HTTP", 1, 1), 200, "OK"));
when(ourHttpResponse.getEntity().getContentType())
.thenReturn(new BasicHeader("content-type", Constants.CT_ATOM_XML + "; charset=UTF-8"));
when(ourHttpResponse.getEntity().getContent())
.thenReturn(new ReaderInputStream(new StringReader(retVal), Charset.forName("UTF-8")));
Patient p1 = new Patient();
p1.addIdentifier().setSystem("urn:system").setValue("value");
IGenericClient client = ourCtx.newRestfulGenericClient("http://foo");
client.transaction().withResources(Arrays.asList((IBaseResource) p1)).execute();
HttpUriRequest value = capt.getValue();
assertTrue("Expected request of type POST on long params list", value instanceof HttpPost);
HttpPost post = (HttpPost) value;
String body = IOUtils.toString(post.getEntity().getContent());
IOUtils.closeQuietly(post.getEntity().getContent());
ourLog.info(body);
assertThat(
body, Matchers.containsString("<type value=\"" + BundleTypeEnum.TRANSACTION.getCode()));
}
@Test
public void testSpecificallyNamedQueryGetsPrecedence() throws Exception {
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?AAA=123");
HttpResponse status = ourClient.execute(httpGet);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
assertEquals(200, status.getStatusLine().getStatusCode());
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
assertEquals(1, bundle.getEntries().size());
Patient p = bundle.getResources(Patient.class).get(0);
assertEquals("AAA", p.getIdentifierFirstRep().getValue().getValue());
// Now the named query
httpGet =
new HttpGet("http://localhost:" + ourPort + "/Patient?_query=findPatientByAAA&AAA=123");
status = ourClient.execute(httpGet);
responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
assertEquals(200, status.getStatusLine().getStatusCode());
bundle = ourCtx.newXmlParser().parseBundle(responseContent);
assertEquals(1, bundle.getEntries().size());
p = bundle.getResources(Patient.class).get(0);
assertEquals("AAANamed", p.getIdentifierFirstRep().getValue().getValue());
}
@SuppressWarnings("deprecation")
@Test
public void testSchemaBundleValidator() throws IOException {
String res =
IOUtils.toString(getClass().getClassLoader().getResourceAsStream("bundle-example.json"));
Bundle b = ourCtx.newJsonParser().parseBundle(res);
FhirValidator val = createFhirValidator();
val.validate(b);
MedicationOrder p = (MedicationOrder) b.getEntries().get(0).getResource();
TimingDt timing = new TimingDt();
timing.getRepeat().setDuration(123);
timing.getRepeat().setDurationUnits((UnitsOfTimeEnum) null);
p.getDosageInstructionFirstRep().setTiming(timing);
try {
val.validate(b);
fail();
} catch (ValidationFailureException e) {
String encoded =
ourCtx
.newXmlParser()
.setPrettyPrint(true)
.encodeResourceToString(e.getOperationOutcome());
ourLog.info(encoded);
assertThat(encoded, containsString("tim-1:"));
}
}
@Before
public void before() {
myHttpClient = mock(HttpClient.class, new ReturnsDeepStubs());
myHttpResponse = mock(HttpResponse.class, new ReturnsDeepStubs());
myCtx = FhirContext.forDstu2();
myCtx.getRestfulClientFactory().setHttpClient(myHttpClient);
myFirstResponse = true;
}
public Throwable fhir(SparseArray<GlucoseRecord> records) {
try {
Patient p = getPatient();
Log.d(TAG, "converting glucoserecrods to observations now");
Device d = initializeDevice(p);
// do conditional update here so the device is updated if needed
String ident = getConditionalUrl(d, d.getIdentifierFirstRep());
String a = ctx.newXmlParser().setPrettyPrint(true).encodeResourceToString(d);
IdDt id = (IdDt) client.update().resource(d).conditionalByUrl(ident).execute().getId();
d.setId(id);
DeviceMetric metric = initializeDeviceMetric(d);
metric.setId(
client
.create()
.resource(metric)
.conditionalByUrl(getConditionalUrl(metric, metric.getIdentifier()))
.execute()
.getId());
for (int i = 0; i < records.size(); i++) {
int j = records.keyAt(i);
GlucoseRecord r = records.get(j);
Log.d(TAG, "creating quantity");
QuantityDt qdt = initializeQuantityDt(r);
Observation o = initializeObservation(p, metric, r, qdt);
Log.d(TAG, "submitting to server...");
// client.update().resource(o).conditionalByUrl("Observation?identifier=http://...%7Cid").encodedJson().execute();
IdDt did =
(IdDt)
client
.update()
.resource(o)
.conditionalByUrl(getConditionalUrl(o, o.getIdentifierFirstRep()))
.execute()
.getId();
o.setId(did);
String s = ctx.newXmlParser().setPrettyPrint(true).encodeResourceToString(o);
Log.d(TAG, "... done");
}
} catch (Throwable e) {
return e;
}
return null;
}
@Before
public void before() {
ourCtx = FhirContext.forDstu2();
ourHttpClient = mock(HttpClient.class, new ReturnsDeepStubs());
ourCtx.getRestfulClientFactory().setHttpClient(ourHttpClient);
ourCtx.getRestfulClientFactory().setServerValidationMode(ServerValidationModeEnum.NEVER);
ourHttpResponse = mock(HttpResponse.class, new ReturnsDeepStubs());
}
@Test
public void testForceConformanceCheck() throws Exception {
Conformance conf = new Conformance();
conf.setFhirVersion("0.5.0");
final String confResource = myCtx.newXmlParser().encodeResourceToString(conf);
ArgumentCaptor<HttpUriRequest> capt = ArgumentCaptor.forClass(HttpUriRequest.class);
when(myHttpResponse.getStatusLine())
.thenReturn(new BasicStatusLine(new ProtocolVersion("HTTP", 1, 1), 200, "OK"));
when(myHttpResponse.getEntity().getContentType())
.thenReturn(new BasicHeader("content-type", Constants.CT_FHIR_XML + "; charset=UTF-8"));
when(myHttpResponse.getEntity().getContent())
.thenAnswer(
new Answer<InputStream>() {
@Override
public InputStream answer(InvocationOnMock theInvocation) throws Throwable {
if (myFirstResponse) {
myFirstResponse = false;
return new ReaderInputStream(
new StringReader(confResource), Charset.forName("UTF-8"));
} else {
Patient resource = new Patient();
resource.addName().addFamily().setValue("FAM");
return new ReaderInputStream(
new StringReader(myCtx.newXmlParser().encodeResourceToString(resource)),
Charset.forName("UTF-8"));
}
}
});
when(myHttpClient.execute(capt.capture())).thenReturn(myHttpResponse);
myCtx.getRestfulClientFactory().setServerValidationMode(ServerValidationModeEnum.ONCE);
IGenericClient client = myCtx.newRestfulGenericClient("http://foo");
client.registerInterceptor(new BasicAuthInterceptor("USER", "PASS"));
client.forceConformanceCheck();
assertEquals(1, capt.getAllValues().size());
Patient pt = (Patient) client.read(new UriDt("http://foo/Patient/123"));
assertEquals("FAM", pt.getNameFirstRep().getFamilyAsSingleString());
assertEquals(2, capt.getAllValues().size());
Header auth = capt.getAllValues().get(0).getFirstHeader("Authorization");
assertNotNull(auth);
assertEquals("Basic VVNFUjpQQVNT", auth.getValue());
auth = capt.getAllValues().get(1).getFirstHeader("Authorization");
assertNotNull(auth);
assertEquals("Basic VVNFUjpQQVNT", auth.getValue());
}
@Test
public void testExtendedClass() {
FhirContext ctx = new FhirContext();
ctx.getResourceDefinition(MyPatient.class);
RuntimeResourceDefinition patient = ctx.getResourceDefinition("Patient");
assertEquals(Patient.class, patient.getImplementingClass());
RuntimeResourceDefinition def = ctx.getResourceDefinition(MyPatient.class);
RuntimeResourceDefinition baseDef = def.getBaseDefinition();
assertEquals(Patient.class, baseDef.getImplementingClass());
}
public FHIRService(
String url,
Context context,
DeviceInformation deviceInfo,
no.nordicsemi.android.nrftoolbox.gls.Patient p) {
this.context = context;
this.deviceInfo = deviceInfo;
this.patient = p;
// initialize context and client
ctx = FhirContext.forDstu2();
ctx.getRestfulClientFactory().setServerValidationMode(ServerValidationModeEnum.NEVER);
client = ctx.newRestfulGenericClient(url);
}
public static BaseHttpClientInvocation createValidateInvocation(
FhirContext theContext, IBaseResource theResource) {
IBaseParameters parameters =
(IBaseParameters) theContext.getResourceDefinition("Parameters").newInstance();
ParametersUtil.addParameterToParameters(theContext, parameters, theResource, "resource");
String resourceName = theContext.getResourceDefinition(theResource).getName();
String resourceId = theResource.getIdElement().getIdPart();
BaseHttpClientInvocation retVal =
createOperationInvocation(
theContext, resourceName, resourceId, Constants.EXTOP_VALIDATE, parameters, false);
return retVal;
}
@Override
public ValueSet expandByIdentifier(String theUri, String theFilter) {
if (isBlank(theUri)) {
throw new InvalidRequestException("URI must not be blank or missing");
}
ValueSet source;
org.hl7.fhir.instance.model.ValueSet defaultValueSet =
myDefaultProfileValidationSupport.fetchResource(
myRiCtx, org.hl7.fhir.instance.model.ValueSet.class, theUri);
if (defaultValueSet != null) {
source =
getContext()
.newJsonParser()
.parseResource(
ValueSet.class, myRiCtx.newJsonParser().encodeResourceToString(defaultValueSet));
} else {
IBundleProvider ids = search(ValueSet.SP_URL, new UriParam(theUri));
if (ids.size() == 0) {
throw new InvalidRequestException("Unknown ValueSet URI: " + theUri);
}
source = (ValueSet) ids.getResources(0, 1).get(0);
}
return expand(source, theFilter);
}
@Test
public void testIIncludedResourcesNonContainedInExtensionJson() throws Exception {
HttpGet httpGet =
new HttpGet(
"http://localhost:" + ourPort + "/Patient?_query=extInclude&_pretty=true&_format=json");
HttpResponse status = ourClient.execute(httpGet);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
assertEquals(200, status.getStatusLine().getStatusCode());
Bundle bundle = ourCtx.newJsonParser().parseBundle(responseContent);
ourLog.info(responseContent);
assertEquals(3, bundle.size());
assertEquals(
new IdDt("Patient/p1"),
bundle.toListOfResources().get(0).getId().toUnqualifiedVersionless());
assertEquals(
new IdDt("Patient/p2"),
bundle.toListOfResources().get(1).getId().toUnqualifiedVersionless());
assertEquals(
new IdDt("Organization/o1"),
bundle.toListOfResources().get(2).getId().toUnqualifiedVersionless());
assertEquals(
BundleEntrySearchModeEnum.INCLUDE,
bundle.getEntries().get(2).getSearchMode().getValueAsEnum());
Patient p1 = (Patient) bundle.toListOfResources().get(0);
assertEquals(0, p1.getContained().getContainedResources().size());
Patient p2 = (Patient) bundle.toListOfResources().get(1);
assertEquals(0, p2.getContained().getContainedResources().size());
}
public class ModelExtensionTest {
private static final org.slf4j.Logger ourLog =
org.slf4j.LoggerFactory.getLogger(ModelExtensionTest.class);
private FhirContext ourCtx = FhirContext.forDstu1();
@Test
public void testModelExtension() throws DataFormatException {
MyOrganization org = new MyOrganization();
org.getName().setValue("org0");
MyPatient patient = new MyPatient();
patient.addIdentifier("foo", "bar");
patient.getManagingOrganization().setResource(org);
IParser p = ourCtx.newXmlParser().setPrettyPrint(true);
String str = p.encodeResourceToString(patient);
ourLog.info(str);
MyPatient parsed = ourCtx.newXmlParser().parseResource(MyPatient.class, str);
assertEquals("foo", parsed.getIdentifierFirstRep().getSystem().getValueAsString());
// assertEquals(MyOrganization.class,
// parsed.getManagingOrganization().getResource().getClass());
// MyOrganization parsedOrg = (MyOrganization) parsed.getManagingOrganization().getResource();
// assertEquals("arg0", parsedOrg.getName().getValue());
}
@AfterClass
public static void afterClassClearContext() {
TestUtil.clearAllStaticFieldsForUnitTest();
}
}
/** See #164 */
@Test
public void testSearchByPostWithParamsInBodyAndUrl() throws Exception {
HttpPost filePost =
new HttpPost("http://localhost:" + ourPort + "/Patient/_search?name=Central");
// add parameters to the post method
List<NameValuePair> parameters = new ArrayList<NameValuePair>();
parameters.add(new BasicNameValuePair("_id", "aaa"));
UrlEncodedFormEntity sendentity = new UrlEncodedFormEntity(parameters, "UTF-8");
filePost.setEntity(sendentity);
HttpResponse status = ourClient.execute(filePost);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
ourLog.info(responseContent);
assertEquals(200, status.getStatusLine().getStatusCode());
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
assertEquals(1, bundle.getEntries().size());
Patient p = bundle.getResources(Patient.class).get(0);
assertEquals("idaaa", p.getName().get(0).getFamilyAsSingleString());
assertEquals("nameCentral", p.getName().get(1).getFamilyAsSingleString());
}
@Test
public void testUpdateNoResponse() throws Exception {
DiagnosticReport dr = new DiagnosticReport();
dr.setId("001");
dr.addCodedDiagnosis().addCoding().setCode("AAA");
String encoded = ourCtx.newXmlParser().encodeResourceToString(dr);
ourLog.info("OUT: {}", encoded);
HttpPut httpPost = new HttpPut("http://localhost:" + ourPort + "/DiagnosticReport/001");
httpPost.setEntity(
new StringEntity(encoded, ContentType.create(Constants.CT_FHIR_XML, "UTF-8")));
HttpResponse status = ourClient.execute(httpPost);
try {
ourLog.info(IOUtils.toString(status.getEntity().getContent()));
assertEquals(200, status.getStatusLine().getStatusCode());
assertEquals(
"http://localhost:" + ourPort + "/DiagnosticReport/001/_history/002",
status.getFirstHeader("location").getValue());
} finally {
IOUtils.closeQuietly(status.getEntity().getContent());
}
}
@Test
public void testUpdateWithVersion() throws Exception {
DiagnosticReport dr = new DiagnosticReport();
dr.setId("001");
dr.getIdentifier().setValue("001");
HttpPut httpPut = new HttpPut("http://localhost:" + ourPort + "/DiagnosticReport/001");
httpPut.addHeader("Content-Location", "/DiagnosticReport/001/_history/004");
httpPut.setEntity(
new StringEntity(
ourCtx.newXmlParser().encodeResourceToString(dr),
ContentType.create(Constants.CT_FHIR_XML, "UTF-8")));
HttpResponse status = ourClient.execute(httpPut);
IOUtils.closeQuietly(status.getEntity().getContent());
// String responseContent =
// IOUtils.toString(status.getEntity().getContent());
// ourLog.info("Response was:\n{}", responseContent);
assertEquals(200, status.getStatusLine().getStatusCode());
assertEquals(
"http://localhost:" + ourPort + "/DiagnosticReport/001/_history/002",
status.getFirstHeader("Location").getValue());
}
@Test
public void testUpdateWithWrongResourceType() throws Exception {
Patient patient = new Patient();
patient.addIdentifier().setValue("002");
HttpPut httpPost = new HttpPut("http://localhost:" + ourPort + "/DiagnosticReport/AAAAAA");
httpPost.setEntity(
new StringEntity(
ourCtx.newXmlParser().encodeResourceToString(patient),
ContentType.create(Constants.CT_FHIR_XML, "UTF-8")));
HttpResponse status = ourClient.execute(httpPost);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
ourLog.info("Response was:\n{}", responseContent);
assertEquals(400, status.getStatusLine().getStatusCode());
String expected =
"<OperationOutcome xmlns=\"http://hl7.org/fhir\"><issue><severity value=\"error\"/><details value=\"Failed to parse request body as XML resource. Error was: DataFormatException at [[row,col {unknown-source}]: [1,1]]: Incorrect resource type found, expected "DiagnosticReport" but found "Patient"\"/></issue></OperationOutcome>";
assertEquals(expected, responseContent);
}
@Test
public void testUpdateWithoutConditionalUrl() throws Exception {
Patient patient = new Patient();
patient.addIdentifier().setValue("002");
HttpPut httpPost = new HttpPut("http://localhost:" + ourPort + "/Patient/2");
httpPost.setEntity(
new StringEntity(
ourCtx.newXmlParser().encodeResourceToString(patient),
ContentType.create(Constants.CT_FHIR_XML, "UTF-8")));
HttpResponse status = ourClient.execute(httpPost);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
ourLog.info("Response was:\n{}", responseContent);
assertEquals(200, status.getStatusLine().getStatusCode());
assertEquals(
"http://localhost:" + ourPort + "/Patient/001/_history/002",
status.getFirstHeader("location").getValue());
assertEquals(
"http://localhost:" + ourPort + "/Patient/001/_history/002",
status.getFirstHeader("content-location").getValue());
assertEquals("Patient/2", new IdType(ourLastId).toUnqualified().getValue());
assertEquals("Patient/2", ourLastIdParam.toUnqualified().getValue());
assertNull(ourLastConditionalUrl);
}
@Test
public void testServerReturnsAnHttp401() throws Exception {
ArgumentCaptor<HttpUriRequest> capt = ArgumentCaptor.forClass(HttpUriRequest.class);
when(myHttpResponse.getStatusLine())
.thenReturn(new BasicStatusLine(new ProtocolVersion("HTTP", 1, 1), 401, "Unauthorized"));
when(myHttpResponse.getEntity().getContentType())
.thenReturn(new BasicHeader("content-type", Constants.CT_TEXT));
when(myHttpResponse.getEntity().getContent())
.thenAnswer(
new Answer<InputStream>() {
@Override
public InputStream answer(InvocationOnMock theInvocation) throws Throwable {
return new ReaderInputStream(
new StringReader("Unauthorized"), Charset.forName("UTF-8"));
}
});
when(myHttpClient.execute(capt.capture())).thenReturn(myHttpResponse);
IGenericClient client = myCtx.newRestfulGenericClient("http://foo");
try {
client.read().resource(Patient.class).withId("123").execute();
fail();
} catch (AuthenticationException e) {
// good
}
}
private void encodeUndeclaredExtensions(
IBaseResource theResource,
XMLStreamWriter theWriter,
List<? extends IBaseExtension<?>> theExtensions,
String tagName,
boolean theIncludedResource)
throws XMLStreamException, DataFormatException {
for (IBaseExtension<?> next : theExtensions) {
if (next == null) {
continue;
}
theWriter.writeStartElement(tagName);
String url = next.getUrl();
theWriter.writeAttribute("url", url);
if (next.getValue() != null) {
IBaseDatatype value = next.getValue();
RuntimeChildUndeclaredExtensionDefinition extDef =
myContext.getRuntimeChildUndeclaredExtensionDefinition();
String childName = extDef.getChildNameByDatatype(value.getClass());
BaseRuntimeElementDefinition<?> childDef;
if (childName == null) {
childDef = myContext.getElementDefinition(value.getClass());
if (childDef == null) {
throw new ConfigurationException(
"Unable to encode extension, unrecognized child element type: "
+ value.getClass().getCanonicalName());
} else {
childName =
RuntimeChildUndeclaredExtensionDefinition.createExtensionChildName(childDef);
}
} else {
childDef = extDef.getChildElementDefinitionByDatatype(value.getClass());
}
encodeChildElementToStreamWriter(
theResource, theWriter, value, childName, childDef, null, theIncludedResource);
}
// child extensions
encodeExtensionsIfPresent(theResource, theWriter, next, theIncludedResource);
theWriter.writeEndElement();
}
}
@Test
public void testSchemaBundleValidatorIsSuccessful() throws IOException {
String res =
IOUtils.toString(getClass().getClassLoader().getResourceAsStream("bundle-example.json"));
Bundle b = ourCtx.newJsonParser().parseBundle(res);
ourLog.info(ourCtx.newXmlParser().setPrettyPrint(true).encodeBundleToString(b));
FhirValidator val = createFhirValidator();
ValidationResult result = val.validateWithResult(b);
OperationOutcome operationOutcome = (OperationOutcome) result.toOperationOutcome();
assertTrue(result.toString(), result.isSuccessful());
assertNotNull(operationOutcome);
assertEquals(1, operationOutcome.getIssue().size());
}
@Test
public void testServerReturnsAppropriateVersionForDstu2_050() throws Exception {
Conformance conf = new Conformance();
conf.setFhirVersion("0.5.0");
final String confResource = myCtx.newXmlParser().encodeResourceToString(conf);
ArgumentCaptor<HttpUriRequest> capt = ArgumentCaptor.forClass(HttpUriRequest.class);
when(myHttpResponse.getStatusLine())
.thenReturn(new BasicStatusLine(new ProtocolVersion("HTTP", 1, 1), 200, "OK"));
when(myHttpResponse.getEntity().getContentType())
.thenReturn(new BasicHeader("content-type", Constants.CT_FHIR_XML + "; charset=UTF-8"));
when(myHttpResponse.getEntity().getContent())
.thenAnswer(
new Answer<InputStream>() {
@Override
public InputStream answer(InvocationOnMock theInvocation) throws Throwable {
if (myFirstResponse) {
myFirstResponse = false;
return new ReaderInputStream(
new StringReader(confResource), Charset.forName("UTF-8"));
} else {
return new ReaderInputStream(
new StringReader(myCtx.newXmlParser().encodeResourceToString(new Patient())),
Charset.forName("UTF-8"));
}
}
});
when(myHttpClient.execute(capt.capture())).thenReturn(myHttpResponse);
myCtx.getRestfulClientFactory().setServerValidationMode(ServerValidationModeEnum.ONCE);
IGenericClient client = myCtx.newRestfulGenericClient("http://foo");
// don't load the conformance until the first time the client is actually used
assertTrue(myFirstResponse);
client.read(new UriDt("http://foo/Patient/123"));
assertFalse(myFirstResponse);
myCtx.newRestfulGenericClient("http://foo").read(new UriDt("http://foo/Patient/123"));
myCtx.newRestfulGenericClient("http://foo").read(new UriDt("http://foo/Patient/123"));
// Conformance only loaded once, then 3 reads
verify(myHttpClient, times(4)).execute(Matchers.any(HttpUriRequest.class));
}