private Paint withoutGraphTheory(BiologicalNodeAbstract v) {
boolean medium_check = false;
if (v instanceof Transition) {
if (((Transition) v).isSimulationActive()) {
return Color.red;
}
}
if (psV.getPicked().isEmpty()) {
if (psE.getPicked().isEmpty()) {
if (v.isReference() || v.isHidden()) return Color.LIGHT_GRAY;
else if (v.hasBrendaNode() || v.hasKEGGNode()) return Color.RED;
else if (settings.isBackgroundColor()) return Color.WHITE;
else
// return Color.BLACK;
return Color.DARK_GRAY;
} else {
Set<BiologicalEdgeAbstract> set = psE.getPicked();
BiologicalEdgeAbstract e;
for (Iterator<BiologicalEdgeAbstract> it = set.iterator(); it.hasNext(); ) {
e = it.next();
// Pair points = e.getEndpoints();
if (v == e.getFrom() || v == e.getTo()) medium_check = true;
}
if (medium_check) {
if (settings.isBackgroundColor()) {
return Color.WHITE;
} else {
// return Color.BLACK;
return Color.DARK_GRAY;
}
} else {
return Color.LIGHT_GRAY;
}
}
} else {
if (psV.isPicked(v))
if (settings.isBackgroundColor()) return Color.WHITE;
else
// return Color.BLACK;
// return Color.DARK_GRAY;
return Color.BLUE;
else {
BiologicalNodeAbstract w;
Iterator<BiologicalNodeAbstract> iter =
pw.getGraph().getJungGraph().getNeighbors(v).iterator();
while (iter.hasNext()) {
w = iter.next();
if (psV.isPicked(w)) medium_check = true;
}
Set<BiologicalEdgeAbstract> set = psE.getPicked();
BiologicalEdgeAbstract bea;
for (Iterator<BiologicalEdgeAbstract> it = set.iterator(); it.hasNext(); ) {
bea = it.next();
if (v == bea.getFrom() || v == bea.getTo()) medium_check = true;
}
if (medium_check)
if (settings.isBackgroundColor()) return Color.WHITE;
else
// return Color.BLACK;
return Color.DARK_GRAY;
else return Color.LIGHT_GRAY;
}
}
}
