public static HistogramHolder createSimpleHistogram(int binWidth, List<Integer> theValues) {
if (theValues == null || theValues.isEmpty()) {
throw new IllegalArgumentException(
"values and valueErrors cannot be null and must be the same length");
}
float[] values = new float[theValues.size()];
for (int i = 0; i < theValues.size(); ++i) {
int v = theValues.get(i).intValue();
values[i] = v;
}
float[] valueErrors = Errors.populateYErrorsBySqrt(values);
float[] minMax = MiscMath.calculateOuterRoundedMinAndMax(values);
int nBins = (int) Math.ceil(((minMax[1] - minMax[0])) / binWidth);
if (nBins < 0) {
nBins *= -1;
}
float[] xHist = new float[nBins];
int[] yHist = new int[nBins];
Histogram.createHistogram(values, nBins, minMax[0], minMax[1], xHist, yHist, binWidth);
float[] yHistFloat = new float[yHist.length];
for (int i = 0; i < yHist.length; i++) {
yHistFloat[i] = (float) yHist[i];
}
float[] yErrors = new float[xHist.length];
float[] xErrors = new float[xHist.length];
calulateHistogramBinErrors(xHist, yHist, values, valueErrors, xErrors, yErrors);
HistogramHolder histogram = new HistogramHolder();
histogram.setXHist(xHist);
histogram.setYHist(yHist);
histogram.setYHistFloat(yHistFloat);
histogram.setYErrors(yErrors);
histogram.setXErrors(xErrors);
return histogram;
}
public static HistogramHolder createSimpleHistogram(GreyscaleImage img) {
float[] values = new float[img.getNPixels()];
int count = 0;
for (int i = 0; i < img.getWidth(); ++i) {
for (int j = 0; j < img.getHeight(); ++j) {
int v = img.getValue(i, j);
values[count] = v;
count++;
}
}
float[] errors = Errors.populateYErrorsBySqrt(values);
HistogramHolder hist = createSimpleHistogram(values, errors);
return hist;
}
public static HistogramHolder createSimpleHistogram(List<Integer> values) {
if (values == null) {
throw new IllegalArgumentException(
"values and valueErrors cannot be null and must be the same length");
}
if (values.isEmpty()) {
return null;
}
float[] v = new float[values.size()];
for (int i = 0; i < values.size(); ++i) {
v[i] = values.get(i).intValue();
}
float[] ve = Errors.populateYErrorsBySqrt(v);
int nBins = (int) (2 * Math.pow(v.length, 0.3333));
if (v.length == 1) {
nBins = 1;
}
return createSimpleHistogram(nBins, v, ve);
}
public static HistogramHolder createHistogramAndRemovePreAndProceedingZeros(GreyscaleImage img) {
float[] values = new float[img.getNPixels()];
int count = 0;
for (int i = 0; i < img.getWidth(); ++i) {
for (int j = 0; j < img.getHeight(); ++j) {
int v = img.getValue(i, j);
values[count] = v;
count++;
}
}
float[] errors = Errors.populateYErrorsBySqrt(values);
HistogramHolder hist = createSimpleHistogram(values, errors);
if (hist.getXHist().length < 2) {
return hist;
}
int n = hist.getXHist().length;
// int yMax = MiscMath.findMax(hist.getYHist());
// int yMin = MiscMath.findMin(hist.getYHist());
int fIdx = 0;
for (int i = 0; i < n; ++i) {
fIdx = i;
int y = hist.getYHist()[i];
if (y > 0) {
break;
}
}
int lIdx = (n - 1);
for (int i = (n - 1); i > -1; --i) {
lIdx = i;
int y = hist.getYHist()[i];
if (y > 0) {
break;
}
}
if ((fIdx <= 1) && (lIdx >= (n - 2))) {
return hist;
}
/*
if there are a large number of bins, re-do the x idx limits using
a lower limit larger than spurious counts... this may need revision
*/
// TODO: consider comparing (lIdx - fIdx) > 30
if (hist.getXHist().length > 30) {
int tmp0 = fIdx;
int tmp1 = lIdx;
int xMaxYIdx = MiscMath.findYMaxIndex(hist.getYHist());
float limit = (int) Math.ceil(Math.sqrt(hist.getYHist()[xMaxYIdx]));
fIdx = 0;
for (int i = 0; i < n; ++i) {
fIdx = i;
int y = hist.getYHist()[i];
if (y > limit) {
break;
}
}
lIdx = (n - 1);
for (int i = (n - 1); i > -1; --i) {
lIdx = i;
int y = hist.getYHist()[i];
if (y > limit) {
break;
}
}
int maxDiffIdx = Math.max(xMaxYIdx - fIdx, lIdx - xMaxYIdx);
fIdx = xMaxYIdx - 3 * maxDiffIdx;
lIdx = xMaxYIdx + 3 * maxDiffIdx;
if (fIdx < 0) {
fIdx = tmp0;
}
if (lIdx > (n - 1)) {
lIdx = tmp1;
}
}
// re-do for smaller range
float xBin = hist.getXHist()[1] - hist.getXHist()[0];
float xf;
if (fIdx == 0) {
xf = hist.getXHist()[0] - (xBin / 2.f);
} else {
xf = hist.getXHist()[fIdx - 1] - (xBin / 2.f);
}
float xl;
if (lIdx == (n - 1)) {
xl = hist.getXHist()[lIdx] + (xBin / 2.f);
} else {
xl = hist.getXHist()[lIdx + 1] + (xBin / 2.f);
}
int n2 = 0;
float[] values2 = new float[values.length];
float[] errors2 = new float[values2.length];
for (int i = 0; i < values2.length; ++i) {
float v = values[i];
if ((v >= xf) && (v <= xl)) {
values2[n2] = v;
errors2[n2] = errors[n2];
n2++;
}
}
values2 = Arrays.copyOf(values2, n2);
errors2 = Arrays.copyOf(errors2, n2);
hist = createSimpleHistogram(values2, errors2);
return hist;
}