protected void runAlgorithm() {
// Retrieve a list of string values dictating where elements are supposed to occur in a table.
tableStructure = buildingModel.getTableStructure();
headers = new ArrayList<String>();
colsToUse = new ListOrderedSet<Integer>();
int count = tableStructure.size() + 1;
for (int i = 0; i < tableStructure.size(); i++) {
// modify this to only add those factors which appear in temp factors.
if (tableStructure.get(i)[0].toLowerCase().equals("factors")) {
for (TempFactors factor : factorsToAdd) {
String newFactor = "Factor Value[" + factor.getFactorName().trim() + "]";
addFactor(count, newFactor, factor, i);
}
} else if (tableStructure.get(i)[0].toLowerCase().contains("factor value[")) {
// doing nothing with this factor
} else if (tableStructure.get(i)[0].toLowerCase().contains("characteristics[")) {
String newChar = tableStructure.get(i)[0];
headers.add(newChar);
colsToUse.add(i);
} else {
headers.add(tableStructure.get(i)[0]);
colsToUse.add(i);
}
}
performAssayCentricTask();
}
/**
* This is a check employed to ensure that we are not adding factors that are already defined
* inside the configuration.
*
* @param columnName - Name of column to be added.
* @return boolean - true if already present, false otherwise
*/
protected boolean checkForFactorExistence(String columnName) {
for (TempFactors tf : factorsToAdd) {
String fullFactorName = "Factor Value[" + tf.getFactorName() + "]";
if (fullFactorName.equalsIgnoreCase(columnName)) {
return true;
}
}
return false;
}
