/** Recursively save all child elements and then call ObjBase to save itself. */
@Override
public synchronized boolean save(ClothoConnection conn) {
System.out.println("============ Starting plasmidSample save");
if (!isChanged()) {
System.out.println("plasmidSample didn't require saving");
return true;
}
if (Collector.isLocal(_pSampleDatum._plasmidUUID)) {
Plasmid plas = getPlasmid();
if (!plas.isInDatabase()) {
if (!plas.save(conn)) {
return false;
}
}
}
if (Collector.isLocal(_pSampleDatum._sourceStrainUUID)) {
Strain st = getSourceStrain();
if (!st.isInDatabase()) {
if (!st.save(conn)) {
return false;
}
}
}
return super.save(conn);
}
protected static Entry setStrainFields(StrainData strainData, Entry entry) {
Strain strain = (Strain) entry;
if (strainData == null) return entry;
if (strainData.getHost() != null) strain.setHost(strainData.getHost());
if (strainData.getGenotypePhenotype() != null)
strain.setGenotypePhenotype(strainData.getGenotypePhenotype());
return entry;
}
/**
* Private Constructor for a new Sample generated from scratch, use factory method
* generatePlasmidSample
*
* @param myplasmid the Plasmid ("DNA") within the Sample
* @param mycell the Strain from which the Plasmid is derived
* @param mycontainer the Container the Sample is being put in
* @param myvolume how many uL of liquid are in the new Sample
* @param author who is creating the Sample
*/
private PlasmidSample(Plasmid myplasmid, Strain mycell, double myvolume, Person author) {
super(myplasmid.getName(), myvolume, author);
_pSampleDatum._plasmidUUID = myplasmid.getUUID();
if (mycell != null) {
_pSampleDatum._sourceStrainUUID = mycell.getUUID();
}
}
public void changeSourceStrain(Strain newstrain) {
// NEED TO CHECK IF ITS LOCKED HERE
if (newstrain == null) {
fireData(new RefreshEvent(this, RefreshEvent.Condition.STRAIN_CHANGED));
return;
}
_pSampleDatum._sourceStrainUUID = newstrain.getUUID();
setChanged(RefreshEvent.Condition.STRAIN_CHANGED);
}
private static Entry infoToStrainForField(Entry entry, String value, EntryField field) {
if (!entry.getRecordType().equalsIgnoreCase(EntryType.STRAIN.toString())) return entry;
Strain strain = (Strain) entry;
switch (field) {
case PARENTAL_STRAIN:
strain.setHost(value);
return strain;
case GENOTYPE_OR_PHENOTYPE:
strain.setGenotypePhenotype(value);
return strain;
case PLASMIDS:
strain.setPlasmids(value);
return strain;
default:
return strain;
}
}