protected void importDataProperty(OWLOntology o, OWLDataProperty dataTypeProperty) {
String propertyIRI = dataTypeProperty.getIRI().toString();
String propertyDisplayName = getLabel(o, dataTypeProperty);
PropertyType propertyType = getPropertyType(o, dataTypeProperty);
boolean userVisible = getUserVisible(o, dataTypeProperty);
boolean searchable = getSearchable(o, dataTypeProperty);
Boolean displayTime = getDisplayTime(o, dataTypeProperty);
Double boost = getBoost(o, dataTypeProperty);
if (propertyType == null) {
throw new LumifyException("Could not get property type on data property " + propertyIRI);
}
for (OWLClassExpression domainClassExpr : dataTypeProperty.getDomains(o)) {
OWLClass domainClass = domainClassExpr.asOWLClass();
String domainClassUri = domainClass.getIRI().toString();
Concept domainConcept = getConceptByIRI(domainClassUri);
checkNotNull(domainConcept, "Could not find class with uri: " + domainClassUri);
LOGGER.info("Adding data property " + propertyIRI + " to class " + domainConcept.getTitle());
ArrayList<PossibleValueType> possibleValues = getPossibleValues(o, dataTypeProperty);
Collection<TextIndexHint> textIndexHints = getTextIndexHints(o, dataTypeProperty);
addPropertyTo(
domainConcept,
propertyIRI,
propertyDisplayName,
propertyType,
possibleValues,
textIndexHints,
userVisible,
searchable,
displayTime,
boost);
}
}
protected PropertyType getPropertyType(OWLOntology o, OWLDataProperty dataTypeProperty) {
Set<OWLDataRange> ranges = dataTypeProperty.getRanges(o);
if (ranges.size() == 0) {
return null;
}
if (ranges.size() > 1) {
throw new LumifyException(
"Unexpected number of ranges on data property " + dataTypeProperty.getIRI().toString());
}
for (OWLDataRange range : ranges) {
if (range instanceof OWLDatatype) {
OWLDatatype datatype = (OWLDatatype) range;
return getPropertyType(datatype.getIRI().toString());
}
}
throw new LumifyException(
"Could not find range on data property " + dataTypeProperty.getIRI().toString());
}
private void runWithSeparateFiles() {
if (owlFile == null) {
throw new NullPointerException("You have to specify an ontology file!");
}
OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
OWLOntology ontology = null;
OBDADataFactory obdaDataFactory = OBDADataFactoryImpl.getInstance();
try {
ontology = manager.loadOntologyFromOntologyDocument((new File(owlFile)));
if (disableReasoning) {
/*
* when reasoning is disabled, we extract only the declaration assertions for the vocabulary
*/
ontology = extractDeclarations(manager, ontology);
}
Collection<Predicate> predicates = new ArrayList<>();
for (OWLClass owlClass : ontology.getClassesInSignature()) {
Predicate predicate = obdaDataFactory.getClassPredicate(owlClass.getIRI().toString());
predicates.add(predicate);
}
for (OWLDataProperty owlDataProperty : ontology.getDataPropertiesInSignature()) {
Predicate predicate =
obdaDataFactory.getDataPropertyPredicate(owlDataProperty.getIRI().toString());
predicates.add(predicate);
}
for (OWLObjectProperty owlObjectProperty : ontology.getObjectPropertiesInSignature()) {
Predicate predicate =
obdaDataFactory.getObjectPropertyPredicate(owlObjectProperty.getIRI().toString());
predicates.add(predicate);
}
OBDAModel obdaModel = loadMappingFile(mappingFile);
Ontology inputOntology = OWLAPI3TranslatorUtility.translate(ontology);
obdaModel.declareAll(inputOntology.getVocabulary());
int numPredicates = predicates.size();
int i = 1;
for (Predicate predicate : predicates) {
System.err.println(String.format("Materializing %s (%d/%d)", predicate, i, numPredicates));
serializePredicate(ontology, inputOntology, obdaModel, predicate, outputFile, format);
i++;
}
} catch (OWLOntologyCreationException e) {
e.printStackTrace();
} catch (Exception e) {
e.printStackTrace();
}
}
