@Override
public void mergeWith(IdentifiableObject other, MergeStrategy strategy) {
super.mergeWith(other, strategy);
if (other.getClass().isInstance(this)) {
BaseAnalyticalObject object = (BaseAnalyticalObject) other;
this.clear();
if (strategy.isReplace()) {
relatives = object.getRelatives();
aggregationType = object.getAggregationType();
} else if (strategy.isMerge()) {
relatives = object.getRelatives() == null ? relatives : object.getRelatives();
aggregationType =
object.getAggregationType() == null ? aggregationType : object.getAggregationType();
}
indicators.addAll(object.getIndicators());
dataElements.addAll(object.getDataElements());
dataElementOperands.addAll(object.getDataElementOperands());
dataSets.addAll(object.getDataSets());
periods.addAll(object.getPeriods());
organisationUnits.addAll(object.getOrganisationUnits());
dataElementGroups.addAll(object.getDataElementGroups());
organisationUnitGroups.addAll(object.getOrganisationUnitGroups());
organisationUnitLevels.addAll(object.getOrganisationUnitLevels());
categoryDimensions.addAll(object.getCategoryDimensions());
categoryOptionGroups.addAll(object.getCategoryOptionGroups());
attributeDimensions.addAll(object.getAttributeDimensions());
dataElementDimensions.addAll(object.getDataElementDimensions());
userOrganisationUnitChildren = object.isUserOrganisationUnitChildren();
userOrganisationUnitGrandChildren = object.isUserOrganisationUnitGrandChildren();
itemOrganisationUnitGroups = object.getItemOrganisationUnitGroups();
rewindRelativePeriods = object.isRewindRelativePeriods();
digitGroupSeparator = object.getDigitGroupSeparator();
userOrganisationUnit = object.isUserOrganisationUnit();
sortOrder = object.getSortOrder();
topLimit = object.getTopLimit();
}
}
@Override
public void run(final TaskMonitor taskMonitor) {
taskMonitor.setTitle("Adding variations...");
taskMonitor.setProgress(0.0d);
if (!mergeStrategy.isRetain()) {
final Lock nodesReadLock = model.nodes().getReadWriteLock().readLock();
final Lock featuresReadLock = model.features().getReadWriteLock().readLock();
final Lock variationsWriteLock = model.variations().getReadWriteLock().writeLock();
nodesReadLock.lock();
featuresReadLock.lock();
variationsWriteLock.lock();
try {
for (int i = 0, size = model.features().size(); i < size; i++) {
Feature feature = model.features().get(i);
taskMonitor.setStatusMessage(
"Retrieving variations associated with feature " + feature + "...");
final List<Variation> variations = model.getVariationService().variations(feature);
taskMonitor.setStatusMessage(
resultStatusMessage(variations.size(), "variation", "feature", feature));
// todo: merge strategy
for (Variation variation : variations) {
if (!model.variations().contains(variation)) {
model.variations().add(variation);
}
}
// todo: count doesn't consider existing variations
for (CyNode node : model.nodesFor(feature)) {
addCount(node, model.getNetwork(), "variation_count", variations.size());
}
taskMonitor.setProgress(i / (double) size);
}
} finally {
nodesReadLock.unlock();
featuresReadLock.unlock();
variationsWriteLock.unlock();
}
}
taskMonitor.setProgress(1.0d);
}
public List<String> merge(List<String> first, List<String> second) {
return mergeStrategy.merge(first, second);
}
