public Instance pipe(Instance carrier) {
if (!(carrier.getTarget() instanceof String)) {
throw new IllegalArgumentException("Target must be of type String");
}
String featuresLine = (String) carrier.getTarget();
String[] features = featuresLine.split(",?\\s+");
double[] values = new double[features.length];
Arrays.fill(values, 1.0);
for (int i = 0; i < features.length; i++) {
// Support the syntax "FEATURE=0.000342 OTHER_FEATURE=-2.32423"
// \
if (features[i].indexOf("=") != -1) {
String[] keyValuePair = features[i].split("=");
features[i] = keyValuePair[0];
values[i] = Double.parseDouble(keyValuePair[1]);
}
// ensure that the feature has a spot in the alphabet
// \
getTargetAlphabet().lookupIndex(features[i], true);
}
FeatureVector target = new FeatureVector(getTargetAlphabet(), features, values);
carrier.setTarget(target);
return carrier;
}
/** This is (mostly) copied from CRF4.java */
public boolean[][] labelConnectionsIn(
Alphabet outputAlphabet, InstanceList trainingSet, String start) {
int numLabels = outputAlphabet.size();
boolean[][] connections = new boolean[numLabels][numLabels];
for (int i = 0; i < trainingSet.size(); i++) {
Instance instance = trainingSet.getInstance(i);
FeatureSequence output = (FeatureSequence) instance.getTarget();
for (int j = 1; j < output.size(); j++) {
int sourceIndex = outputAlphabet.lookupIndex(output.get(j - 1));
int destIndex = outputAlphabet.lookupIndex(output.get(j));
assert (sourceIndex >= 0 && destIndex >= 0);
connections[sourceIndex][destIndex] = true;
}
}
// Handle start state
if (start != null) {
int startIndex = outputAlphabet.lookupIndex(start);
for (int j = 0; j < outputAlphabet.size(); j++) {
connections[startIndex][j] = true;
}
}
return connections;
}
public Instance pipe(Instance carrier) {
Sequence data = (Sequence) carrier.getData();
Sequence target = (Sequence) carrier.getTarget();
if (data.size() != target.size())
throw new IllegalArgumentException(
"Trying to print into SimpleTagger format, where data and target lengths do not match\n"
+ "data.length = "
+ data.size()
+ ", target.length = "
+ target.size());
int N = data.size();
if (data instanceof TokenSequence) {
throw new UnsupportedOperationException("Not yet implemented.");
} else if (data instanceof FeatureVectorSequence) {
FeatureVectorSequence fvs = (FeatureVectorSequence) data;
Alphabet dict = (fvs.size() > 0) ? fvs.getFeatureVector(0).getAlphabet() : null;
for (int i = 0; i < N; i++) {
Object label = target.get(i);
writer.print(label);
FeatureVector fv = fvs.getFeatureVector(i);
for (int loc = 0; loc < fv.numLocations(); loc++) {
writer.print(' ');
String fname = dict.lookupObject(fv.indexAtLocation(loc)).toString();
double value = fv.valueAtLocation(loc);
// if (!Maths.almostEquals(value, 1.0)) {
// throw new IllegalArgumentException ("Printing to SimpleTagger format: FeatureVector
// not binary at time slice "+i+" fv:"+fv);
// }
writer.print(fname + String.valueOf(value));
}
writer.println();
}
} else {
throw new IllegalArgumentException("Don't know how to print data of type " + data);
}
writer.println();
// writer.print(getDataAlphabet());
return carrier;
}
public Instance pipe(Instance carrier) {
TokenSequence ts = (TokenSequence) carrier.getData();
TokenSequence targets =
carrier.getTarget() instanceof TokenSequence ? (TokenSequence) carrier.getTarget() : null;
TokenSequence source =
carrier.getSource() instanceof TokenSequence ? (TokenSequence) carrier.getSource() : null;
StringBuffer sb = new StringBuffer();
if (prefix != null) sb.append(prefix);
sb.append("name: " + carrier.getName() + "\n");
for (int i = 0; i < ts.size(); i++) {
if (source != null) {
sb.append(source.get(i).getText());
sb.append(' ');
}
if (carrier.getTarget() instanceof TokenSequence) {
sb.append(((TokenSequence) carrier.getTarget()).get(i).getText());
sb.append(' ');
}
if (carrier.getTarget() instanceof FeatureSequence) {
sb.append(((FeatureSequence) carrier.getTarget()).getObjectAtPosition(i).toString());
sb.append(' ');
}
PropertyList pl = ts.get(i).getFeatures();
if (pl != null) {
PropertyList.Iterator iter = pl.iterator();
while (iter.hasNext()) {
iter.next();
double v = iter.getNumericValue();
if (v == 1.0) sb.append(iter.getKey());
else sb.append(iter.getKey() + '=' + v);
sb.append(' ');
}
}
sb.append('\n');
}
System.out.print(sb.toString());
return carrier;
}
public void test(
Transducer transducer,
InstanceList data,
String description,
PrintStream viterbiOutputStream) {
int[] ntrue = new int[segmentTags.length];
int[] npred = new int[segmentTags.length];
int[] ncorr = new int[segmentTags.length];
LabelAlphabet dict = (LabelAlphabet) transducer.getInputPipe().getTargetAlphabet();
for (int i = 0; i < data.size(); i++) {
Instance instance = data.getInstance(i);
Sequence input = (Sequence) instance.getData();
Sequence trueOutput = (Sequence) instance.getTarget();
assert (input.size() == trueOutput.size());
Sequence predOutput = transducer.viterbiPath(input).output();
assert (predOutput.size() == trueOutput.size());
List trueSegs = new ArrayList();
List predSegs = new ArrayList();
addSegs(trueSegs, trueOutput);
addSegs(predSegs, predOutput);
// System.out.println("FieldF1Evaluator instance "+instance.getName ());
// printSegs(dict, trueSegs, "True");
// printSegs(dict, predSegs, "Pred");
for (Iterator it = predSegs.iterator(); it.hasNext(); ) {
Segment seg = (Segment) it.next();
npred[seg.tag]++;
if (trueSegs.contains(seg)) {
ncorr[seg.tag]++;
}
}
for (Iterator it = trueSegs.iterator(); it.hasNext(); ) {
Segment seg = (Segment) it.next();
ntrue[seg.tag]++;
}
}
DecimalFormat f = new DecimalFormat("0.####");
logger.info(description + " per-field F1");
for (int tag = 0; tag < segmentTags.length; tag++) {
double precision = ((double) ncorr[tag]) / npred[tag];
double recall = ((double) ncorr[tag]) / ntrue[tag];
double f1 = (2 * precision * recall) / (precision + recall);
Label name = dict.lookupLabel(segmentTags[tag]);
logger.info(
" segments "
+ name
+ " true = "
+ ntrue[tag]
+ " pred = "
+ npred[tag]
+ " correct = "
+ ncorr[tag]);
logger.info(
" precision="
+ f.format(precision)
+ " recall="
+ f.format(recall)
+ " f1="
+ f.format(f1));
}
}