public void run(String arg) {
ImagePlus image = WindowManager.getCurrentImage();
try {
Image3DUniverse univ = new Image3DUniverse();
univ.show();
GUI.center(univ.getWindow());
// only when there is an image and we are not called
// from a macro
if (image != null && !IJ.isMacro()) univ.getExecuter().addContent(image, null);
} catch (Exception e) {
StringBuffer buf = new StringBuffer();
StackTraceElement[] st = e.getStackTrace();
buf.append(
"An unexpected exception occurred. \n"
+ "Please mail me the following lines if you \n"
+ "need help.\n"
+ "[email protected]\n \n");
buf.append(e.getClass().getName() + ":" + e.getMessage() + "\n");
for (int i = 0; i < st.length; i++) {
buf.append(
" at "
+ st[i].getClassName()
+ "."
+ st[i].getMethodName()
+ "("
+ st[i].getFileName()
+ ":"
+ st[i].getLineNumber()
+ ")\n");
}
new ij.text.TextWindow("Error", buf.toString(), 500, 400);
}
}
public static void setTransparency(String t) {
Image3DUniverse univ = getUniv();
float tr = Float.parseFloat(t);
if (univ != null && univ.getSelected() != null) {
univ.getSelected().setTransparency(tr);
}
}
public static void setChannels(String red, String green, String blue) {
Image3DUniverse univ = getUniv();
boolean r = Boolean.valueOf(red).booleanValue();
boolean g = Boolean.valueOf(green).booleanValue();
boolean b = Boolean.valueOf(blue).booleanValue();
if (univ != null && univ.getSelected() != null) {
univ.getSelected().setChannels(new boolean[] {r, g, b});
}
}
public static void setTransform(String transform) {
Image3DUniverse univ = getUniv();
if (univ != null && univ.getSelected() != null) {
String[] s = ij.util.Tools.split(transform);
float[] m = new float[s.length];
for (int i = 0; i < s.length; i++) {
m[i] = Float.parseFloat(s[i]);
}
univ.getSelected().setTransform(new Transform3D(m));
}
}
public static void fillSelection() {
Image3DUniverse univ = getUniv();
if (univ != null
&& univ.getSelected() != null
&& univ.getSelected().getType() == Content.VOLUME) {
VoltexGroup vg = (VoltexGroup) univ.getSelected().getContent();
ImageCanvas3D canvas = (ImageCanvas3D) univ.getCanvas();
vg.fillRoi(canvas, canvas.getRoi(), (byte) 0);
}
}
public static void addOrthoslice(
String image, String c, String name, String r, String g, String b, String resamplingF) {
Image3DUniverse univ = getUniv();
ImagePlus grey = WindowManager.getImage(image);
Color3f color = ColorTable.getColor(c);
int factor = getInt(resamplingF);
boolean[] channels = new boolean[] {getBoolean(r), getBoolean(g), getBoolean(b)};
univ.addOrthoslice(grey, color, name, 0, channels, factor);
}
// Individual content's menu
public static void setSlices(String x, String y, String z) {
Image3DUniverse univ = getUniv();
if (univ != null
&& univ.getSelected() != null
&& univ.getSelected().getType() == Content.ORTHO) {
OrthoGroup vg = (OrthoGroup) univ.getSelected().getContent();
vg.setSlice(VolumeRenderer.X_AXIS, getInt(x));
vg.setSlice(VolumeRenderer.Y_AXIS, getInt(y));
vg.setSlice(VolumeRenderer.Z_AXIS, getInt(z));
}
}
public static void setColor(String red, String green, String blue) {
Image3DUniverse univ = getUniv();
if (univ == null || univ.getSelected() == null) return;
Content sel = univ.getSelected();
try {
float r = getInt(red) / 256f;
float g = getInt(green) / 256f;
float b = getInt(blue) / 256f;
if (univ != null && univ.getSelected() != null) {
sel.setColor(new Color3f(r, g, b));
}
} catch (NumberFormatException e) {
sel.setColor(null);
}
}
// Contents menu
public static void add(
String image,
String c,
String name,
String th,
String r,
String g,
String b,
String resamplingF,
String type) {
Image3DUniverse univ = getUniv();
ImagePlus grey = WindowManager.getImage(image);
Color3f color = ColorTable.getColor(c);
int factor = getInt(resamplingF);
int thresh = getInt(th);
boolean[] channels = new boolean[] {getBoolean(r), getBoolean(g), getBoolean(b)};
int ty = getInt(type);
univ.addContent(grey, color, name, thresh, channels, factor, ty);
}
public static void startFreehandRecording() {
Image3DUniverse univ = getUniv();
if (univ != null) univ.startFreehandRecording();
}
public static void stopAnimate() {
Image3DUniverse univ = getUniv();
if (univ != null) univ.pauseAnimation();
}
public static void record360() {
Image3DUniverse univ = getUniv();
if (univ == null) return;
ImagePlus movie = univ.record360();
if (movie != null) movie.show();
}
public static void unlock() {
Image3DUniverse univ = getUniv();
if (univ != null && univ.getSelected() != null) {
univ.getSelected().setLocked(false);
}
}
// View menu
public static void resetView() {
Image3DUniverse univ = getUniv();
if (univ != null) univ.resetView();
}
public static void resetTransform() {
Image3DUniverse univ = getUniv();
if (univ != null && univ.getSelected() != null) {
univ.getSelected().setTransform(new Transform3D());
}
}
public static void setThreshold(String s) {
Image3DUniverse univ = getUniv();
if (univ != null && univ.getSelected() != null) {
univ.getSelected().setThreshold(getInt(s));
}
}
public static void setCoordinateSystem(String s) {
Image3DUniverse univ = getUniv();
if (univ != null && univ.getSelected() != null) {
univ.getSelected().showCoordinateSystem(getBoolean(s));
}
}
public static void delete() {
Image3DUniverse univ = getUniv();
if (univ != null && univ.getSelected() != null) {
univ.removeContent(univ.getSelected().getName());
}
}
public static void stopFreehandRecording() {
Image3DUniverse univ = getUniv();
if (univ == null) return;
ImagePlus movie = univ.stopFreehandRecording();
if (movie != null) movie.show();
}
public static void close() {
Image3DUniverse univ = getUniv();
if (univ != null) {
univ.close();
}
}
public static void select(String name) {
Image3DUniverse univ = getUniv();
if (univ != null) univ.select((Content) univ.getContent(name));
}
