/**
* add simple error to error container array
*
* @param errorContainer
*/
private void addError(ErrorContainer errorContainer) {
String errorMessage = errorContainer.getError().toString();
String[] splitMessage = errorMessage.split("\n");
errorMessage = errorMessage.replaceAll("\n", "<br> ");
errorContainer.setIndex(totalErrors);
totalErrors = totalErrors + 1;
errorContainer.setStatus(-1); // pending status
errors.add(errorContainer);
onAddError(errorContainer, splitMessage[0]);
notifyObservers(new ImportEvent.ERRORS_PENDING());
}
/**
* Upload a single {@link ErrorContainer}. This can be overwritten in order to test error handling
* without touching QA.
*
* @param errorContainer the error container
*/
public void uploadFile(ErrorContainer errorContainer) {
errorContainer.setToken(serverReply);
try {
fileUploader = new FileUploader(messenger.getCommunicationLink(config.getUploaderUrl()));
fileUploader.addObserver(this);
fileUploader.uploadFiles(config.getUploaderUrl(), 2000, errorContainer);
} catch (Exception e) {
log.error("Error during upload", e);
}
}
/**
* Add detailed error to error container array
*
* @param error - error thrown
* @param file - head file for error
* @param files - all files in import collection
* @param readerType - reader type supplied from bio-formats
*/
protected void addError(Throwable error, File file, String[] files, String readerType) {
ErrorContainer errorContainer = new ErrorContainer();
errorContainer.setFiles(files);
errorContainer.setSelectedFile(file);
errorContainer.setReaderType(readerType);
errorContainer.setCommentType("2");
errorContainer.setJavaVersion(System.getProperty("java.version"));
errorContainer.setJavaClasspath(System.getProperty("java.class.path"));
errorContainer.setOSName(System.getProperty("os.name"));
errorContainer.setOSArch(System.getProperty("os.arch"));
errorContainer.setOSVersion(System.getProperty("os.version"));
errorContainer.setAppVersion(config.getVersionNumber());
errorContainer.setError(error);
addError(errorContainer);
}
/** Send existing errors in ErrorContainer array to server */
protected void sendErrors() {
// create an omero client.
client sc = null;
client client = null;
ServiceFactoryPrx session = null;
try {
if (sendLogs || sendFiles) {
sc = new client(config.hostname.get(), config.port.get());
ServiceFactoryPrx entryEncrypted;
if (!config.sessionKey.empty()) {
entryEncrypted = sc.joinSession(config.sessionKey.get());
} else {
entryEncrypted = sc.createSession(config.username.get(), config.password.get());
}
client = sc.createClient(false);
session = client.getSession();
}
for (int i = 0; i < errors.size(); i++) {
if (!isSend(i)) {
onSent(i);
continue; // Don't send file if not selected
}
if (cancelUploads) {
onCancel();
break;
}
ErrorContainer errorContainer = errors.get(i);
if (errorContainer.getStatus() != -1) // if file not pending, skip
// it
continue;
Map<String, String> postList = new HashMap<String, String>();
postList.put("java_version", errorContainer.getJavaVersion());
postList.put("java_classpath", errorContainer.getJavaClasspath());
postList.put("app_version", errorContainer.getAppVersion());
postList.put("comment_type", errorContainer.getCommentType());
postList.put("os_name", errorContainer.getOSName());
postList.put("os_arch", errorContainer.getOSArch());
postList.put("os_version", errorContainer.getOSVersion());
postList.put("extra", errorContainer.getExtra());
postList.put("error", getStackTrace(errorContainer.getError()));
postList.put("comment", errorContainer.getComment());
postList.put("email", errorContainer.getEmail());
postList.put("app_name", "2");
postList.put("import_session", "test");
postList.put("absolute_path", errorContainer.getAbsolutePath() + "/");
String sendUrl = config.getTokenUrl();
if (isSend(i)) {
if (!sendFiles) {
errorContainer.clearFiles();
}
if (sendLogs || sendFiles) {
File f = errorContainer.getSelectedFile();
if (f != null) {
Long id = logFiles.get(f.getAbsolutePath());
// load the log
File logFile = null;
try {
logFile = retrieveLogFile(id, session);
} catch (Throwable e) {
log.error("Cannot load log file", e);
}
if (logFile != null) {
sendLogs = true;
errorContainer.addFile(logFile.getAbsolutePath());
} else sendLogs = false;
} else sendLogs = false;
}
}
messenger = new HtmlMessenger(sendUrl, postList);
serverReply = messenger.executePost();
if (sendFiles || sendLogs) {
onSending(i);
log.info("Sending File(s)...");
errorContainer.setToken(serverReply);
fileUploader = new FileUploader(messenger.getCommunicationLink(config.getUploaderUrl()));
fileUploader.addObserver(this);
fileUploader.uploadFiles(config.getUploaderUrl(), 2000, errorContainer);
onSent(i);
} else {
onNotSending(i, serverReply);
}
}
} catch (Exception e) {
log.error("Error during upload", e);
} finally {
if (client != null) client.__del__();
if (sc != null) sc.__del__();
}
if (cancelUploads) {
finishCancelled();
}
if (fileUploadErrors) {
finishWithErroredFiles();
notifyObservers(new ImportEvent.ERRORS_COMPLETE());
} else {
finishComplete();
notifyObservers(new ImportEvent.ERRORS_COMPLETE());
}
}