@Override
public boolean isOperational(ExecutionContext executionContext) {
if (!new JellyfishCountV11(this.conanExecutorService).isOperational(executionContext)) {
log.warn("Jellyfish Count is not operational.");
return false;
}
if (!new JellyfishMergeV11(this.conanExecutorService).isOperational(executionContext)) {
log.warn("Jellyfish Merge is not operational.");
return false;
}
KatGcpV1 katGcpProc = new KatGcpV1();
katGcpProc.setConanProcessService(this.getConanProcessService());
if (!katGcpProc.isOperational(executionContext)) {
log.warn("KAT GCP is not operational.");
return false;
}
KatPlotDensityV1 katPlotDensityProc = new KatPlotDensityV1();
katPlotDensityProc.setConanProcessService(this.getConanProcessService());
if (!katPlotDensityProc.isOperational(executionContext)) {
log.warn("KAT Plot Density is not operational.");
return false;
}
log.info("Read Kmer counting stage is operational.");
return true;
}
