public void showAtts() {
if (ds == null) return;
if (attTable == null) {
// global attributes
attTable =
new BeanTable(AttributeBean.class, (PreferencesExt) prefs.node("AttributeBeans"), false);
PopupMenu varPopup = new ucar.nc2.ui.widget.PopupMenu(attTable.getJTable(), "Options");
varPopup.addAction(
"Show Attribute",
new AbstractAction() {
public void actionPerformed(ActionEvent e) {
AttributeBean bean = (AttributeBean) attTable.getSelectedBean();
if (bean != null) {
infoTA.setText(bean.att.toString());
infoTA.gotoTop();
infoWindow.show();
}
}
});
attWindow =
new IndependentWindow("Global Attributes", BAMutil.getImage("netcdfUI"), attTable);
attWindow.setBounds(
(Rectangle) prefs.getBean("AttWindowBounds", new Rectangle(300, 100, 500, 800)));
}
List<AttributeBean> attlist = new ArrayList<>();
for (Attribute att : ds.getGlobalAttributes()) {
attlist.add(new AttributeBean(att));
}
attTable.setBeans(attlist);
attWindow.show();
}
private void showDeclaration(BeanTableSorted from, boolean isNcml) {
Variable v = getCurrentVariable(from);
if (v == null) return;
infoTA.clear();
if (isNcml) {
Formatter out = new Formatter();
try {
NCdumpW.writeNcMLVariable(v, out);
} catch (IOException e) {
e.printStackTrace();
}
infoTA.appendLine(out.toString());
} else {
infoTA.appendLine(v.toString());
}
if (Debug.isSet("Xdeveloper")) {
infoTA.appendLine("\n");
infoTA.appendLine("FULL NAME = " + v.getFullName());
infoTA.appendLine("\n");
infoTA.appendLine(v.toStringDebug());
}
infoTA.gotoTop();
infoWindow.setTitle("Variable Info");
infoWindow.show();
}
private void makeDscanPanel() {
dscanPP = new PrefPanel("dscan", null);
int row = 0;
dscanPP.addCheckBoxField(DSCAN_ADDSIZE, "Add File Size", false, 0, row++);
// dscanPP.addCheckBoxField(DSCAN_ADDLATEST, "Add Latest", false, 0, row++);
dscanPP.addTextField(DSCAN_PATH, "Path", "", 0, row++, null);
dscanPP.addTextField(DSCAN_DIR, "Directory Location", "", 0, row++, null);
// dscanPP.addTextField(DSCAN_FILTER, "Filter", "", 0, row++, null);
dscanPP.addEmptyRow(row++, 2);
dscanPP.addHeading("Time Coverage", row++);
exampleButton = makeButton("Example filename");
exampleButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
InvDataset leaf = findLeafDataset(dataset);
exampleButton.setText((leaf == null) ? "ERR" : leaf.getName());
}
});
dscanPP.addComponent(exampleButton, 0, row, null);
// dscanPP.addTextField(DSCAN_TC_MATCH, "Dataset Name Match", "", 0, row++, null);
// dscanPP.addTextField(DSCAN_TC_SUBS, "Substituton Pattern", "$1-$2-$3T$4:00:00", 0, row++,
// null);
// dscanPP.addTextField(DSCAN_TC_DURATOPN, "Duration", "", 0, row++, null);
dscanPP.finish(false);
IndependentWindow dscanWindow =
new IndependentWindow("DatasetScan " + "options", BAMutil.getImage("thredds"), dscanPP);
dscanWindow.setBounds(new Rectangle(150, 50, 700, 300));
}
public void save() {
varTable.saveState(false);
csTable.saveState(false);
axisTable.saveState(false);
prefs.putBeanObject("InfoWindowBounds", infoWindow.getBounds());
prefs.putInt("splitPos", split.getDividerLocation());
prefs.putInt("splitPos2", split2.getDividerLocation());
prefs.putBeanObject("InfoWindowBounds", infoWindow.getBounds());
if (attWindow != null) prefs.putBeanObject("AttWindowBounds", attWindow.getBounds());
}
public void save() {
dumpPane.save();
for (NestedTable nt : nestedTableList) {
nt.saveState();
}
prefs.putBeanObject("InfoWindowBounds", infoWindow.getBounds());
prefs.putBeanObject("DumpWindowBounds", dumpWindow.getBounds());
if (attWindow != null) prefs.putBeanObject("AttWindowBounds", attWindow.getBounds());
prefs.putInt("mainSplit", mainSplit.getDividerLocation());
}
public DatasetViewer(PreferencesExt prefs, FileManager fileChooser) {
this.prefs = prefs;
this.fileChooser = fileChooser;
// create the variable table(s)
tablePanel = new JPanel(new BorderLayout());
setNestedTable(0, null);
// the tree view
datasetTree = new DatasetTreeView();
datasetTree.addPropertyChangeListener(
new PropertyChangeListener() {
public void propertyChange(PropertyChangeEvent e) {
setSelected((Variable) e.getNewValue());
}
});
// layout
mainSplit = new JSplitPane(JSplitPane.HORIZONTAL_SPLIT, false, datasetTree, tablePanel);
mainSplit.setDividerLocation(prefs.getInt("mainSplit", 100));
setLayout(new BorderLayout());
add(mainSplit, BorderLayout.CENTER);
// the info window
infoTA = new TextHistoryPane();
infoWindow =
new IndependentWindow("Variable Information", BAMutil.getImage("netcdfUI"), infoTA);
infoWindow.setBounds(
(Rectangle) prefs.getBean("InfoWindowBounds", new Rectangle(300, 300, 500, 300)));
// the data Table
dataTable = new StructureTable((PreferencesExt) prefs.node("structTable"));
dataWindow = new IndependentWindow("Data Table", BAMutil.getImage("netcdfUI"), dataTable);
dataWindow.setBounds(
(Rectangle) prefs.getBean("dataWindow", new Rectangle(50, 300, 1000, 600)));
// the ncdump Pane
dumpPane = new NCdumpPane((PreferencesExt) prefs.node("dumpPane"));
dumpWindow =
new IndependentWindow("NCDump Variable Data", BAMutil.getImage("netcdfUI"), dumpPane);
dumpWindow.setBounds(
(Rectangle) prefs.getBean("DumpWindowBounds", new Rectangle(300, 300, 300, 200)));
}
private void compareDataset(CompareDialog.Data data) {
if (data.name == null) return;
NetcdfFile compareFile = null;
try {
compareFile = NetcdfDataset.openFile(data.name, null);
Formatter f = new Formatter();
CompareNetcdf2 cn = new CompareNetcdf2(f, data.showCompare, data.showDetails, data.readData);
if (data.howMuch == CompareDialog.HowMuch.All) cn.compare(ds, compareFile);
else {
NestedTable nested = nestedTableList.get(0);
Variable org = getCurrentVariable(nested.table);
if (org == null) return;
Variable ov = compareFile.findVariable(org.getFullNameEscaped());
if (ov != null) cn.compareVariable(org, ov);
}
infoTA.setText(f.toString());
infoTA.gotoTop();
infoWindow.setTitle("Compare");
infoWindow.show();
} catch (Throwable ioe) {
ByteArrayOutputStream bos = new ByteArrayOutputStream(10000);
ioe.printStackTrace(new PrintStream(bos));
infoTA.setText(bos.toString());
infoTA.gotoTop();
infoWindow.show();
} finally {
if (compareFile != null)
try {
compareFile.close();
} catch (Exception eek) {
}
}
}
private void dataTable(BeanTableSorted from) {
VariableBean vb = (VariableBean) from.getSelectedBean();
if (vb == null) return;
Variable v = vb.vs;
if (v instanceof Structure) {
try {
dataTable.setStructure((Structure) v);
} catch (Exception ex) {
ex.printStackTrace();
}
} else return;
dataWindow.show();
}
private void dumpData(BeanTableSorted from) {
Variable v = getCurrentVariable(from);
if (v == null) return;
dumpPane.clear();
String spec;
try {
spec = ParsedSectionSpec.makeSectionSpecString(v, null);
dumpPane.setContext(ds, spec);
} catch (Exception ex) {
StringWriter s = new StringWriter();
ex.printStackTrace(new PrintWriter(s));
dumpPane.setText(s.toString());
}
dumpWindow.show();
}
public CoordSysTable(PreferencesExt prefs, JPanel buttPanel) {
this.prefs = prefs;
if (buttPanel != null) {
AbstractAction attAction =
new AbstractAction() {
public void actionPerformed(ActionEvent e) {
showAtts();
}
};
BAMutil.setActionProperties(attAction, "FontDecr", "global attributes", false, 'A', -1);
BAMutil.addActionToContainer(buttPanel, attAction);
}
varTable =
new BeanTable(VariableBean.class, (PreferencesExt) prefs.node("VariableBeans"), false);
varTable.addListSelectionListener(
new ListSelectionListener() {
public void valueChanged(ListSelectionEvent e) {
VariableBean vb = (VariableBean) varTable.getSelectedBean();
if (null != vb.firstCoordSys) setSelectedCoordinateSystem(vb.firstCoordSys);
}
});
csTable =
new BeanTable(
CoordinateSystemBean.class, (PreferencesExt) prefs.node("CoordinateSystemBean"), false);
csTable.addListSelectionListener(
new ListSelectionListener() {
public void valueChanged(ListSelectionEvent e) {
CoordinateSystemBean csb = (CoordinateSystemBean) csTable.getSelectedBean();
setSelectedCoordinateAxes(csb.coordSys);
}
});
axisTable =
new BeanTable(AxisBean.class, (PreferencesExt) prefs.node("CoordinateAxisBean"), false);
ucar.nc2.ui.widget.PopupMenu varPopup = new PopupMenu(varTable.getJTable(), "Options");
varPopup.addAction(
"Show Declaration",
new AbstractAction() {
public void actionPerformed(ActionEvent e) {
VariableBean vb = (VariableBean) varTable.getSelectedBean();
Variable v = ds.findVariable(vb.getName());
if (v == null) return;
infoTA.clear();
infoTA.appendLine(v.toString());
infoTA.appendLine(showMissing(v));
infoTA.gotoTop();
infoWindow.show();
}
});
varPopup.addAction(
"Try as Grid",
new AbstractAction() {
public void actionPerformed(ActionEvent e) {
VariableBean vb = (VariableBean) varTable.getSelectedBean();
VariableEnhanced v = (VariableEnhanced) ds.findVariable(vb.getName());
if (v == null) return;
infoTA.clear();
infoTA.appendLine(tryGrid(v));
infoTA.gotoTop();
infoWindow.show();
}
});
PopupMenu csPopup = new PopupMenu(csTable.getJTable(), "Options");
csPopup.addAction(
"Show CoordSys",
new AbstractAction() {
public void actionPerformed(ActionEvent e) {
CoordinateSystemBean csb = (CoordinateSystemBean) csTable.getSelectedBean();
CoordinateSystem coordSys = csb.coordSys;
infoTA.clear();
infoTA.appendLine("Coordinate System = " + coordSys.getName());
for (CoordinateAxis axis : coordSys.getCoordinateAxes()) {
infoTA.appendLine(" " + axis.getAxisType() + " " + axis.writeCDL(true, false));
}
infoTA.appendLine(" Coordinate Transforms");
for (CoordinateTransform ct : coordSys.getCoordinateTransforms()) {
infoTA.appendLine(" " + ct.getName() + " type=" + ct.getTransformType());
for (Parameter p : ct.getParameters()) {
infoTA.appendLine(" " + p);
}
if (ct instanceof ProjectionCT) {
ProjectionCT pct = (ProjectionCT) ct;
if (pct.getProjection() != null) {
infoTA.appendLine(" impl.class= " + pct.getProjection().getClass().getName());
// pct.getProjection();
}
}
if (ct instanceof VerticalCT) {
VerticalCT vct = (VerticalCT) ct;
infoTA.appendLine(" VerticalCT= " + vct);
}
}
infoTA.gotoTop();
infoWindow.show();
}
});
PopupMenu axisPopup = new PopupMenu(axisTable.getJTable(), "Options");
axisPopup.addAction(
"Show Declaration",
new AbstractAction() {
public void actionPerformed(ActionEvent e) {
AxisBean bean = (AxisBean) axisTable.getSelectedBean();
if (bean == null) return;
VariableDS axis = (VariableDS) ds.findVariable(bean.getName());
if (axis == null) return;
infoTA.clear();
infoTA.appendLine(axis.toString());
infoTA.appendLine(showMissing(axis));
infoTA.gotoTop();
infoWindow.show();
}
});
axisPopup.addAction(
"Show Values",
new AbstractAction() {
public void actionPerformed(ActionEvent e) {
AxisBean bean = (AxisBean) axisTable.getSelectedBean();
if (bean == null) return;
infoTA.clear();
showValues(bean.axis);
infoTA.gotoTop();
infoWindow.show();
}
});
axisPopup.addAction(
"Show Value Differences",
new AbstractAction() {
public void actionPerformed(ActionEvent e) {
AxisBean bean = (AxisBean) axisTable.getSelectedBean();
if (bean == null) return;
infoTA.clear();
showValueDiffs(bean.axis);
infoTA.gotoTop();
infoWindow.show();
}
});
axisPopup.addAction(
"Show Values as Date",
new AbstractAction() {
public void actionPerformed(ActionEvent e) {
AxisBean bean = (AxisBean) axisTable.getSelectedBean();
if (bean == null) return;
infoTA.clear();
showValuesAsDates(bean.axis);
infoTA.gotoTop();
infoWindow.show();
}
});
// the info window
infoTA = new TextHistoryPane();
infoWindow = new IndependentWindow("Extra Information", BAMutil.getImage("netcdfUI"), infoTA);
infoWindow.setBounds(
(Rectangle) prefs.getBean("InfoWindowBounds", new Rectangle(300, 300, 500, 300)));
split = new JSplitPane(JSplitPane.VERTICAL_SPLIT, false, varTable, csTable);
split.setDividerLocation(prefs.getInt("splitPos", 500));
split2 = new JSplitPane(JSplitPane.VERTICAL_SPLIT, false, split, axisTable);
split2.setDividerLocation(prefs.getInt("splitPos2", 500));
setLayout(new BorderLayout());
add(split2, BorderLayout.CENTER);
}
void save() {
if (infoWindow != null) prefs.putBeanObject(FRAME_SIZE, infoWindow.getBounds());
}
OpPanel(PreferencesExt prefs, boolean isAccess) {
this.prefs = prefs;
this.isAccess = isAccess;
ta = new TextHistoryPane(true);
infoWindow =
new IndependentWindow("Details", BAMutil.getImage("netcdfUI"), new JScrollPane(ta));
Rectangle bounds = (Rectangle) prefs.getBean(FRAME_SIZE, new Rectangle(200, 50, 500, 700));
infoWindow.setBounds(bounds);
topPanel = new JPanel(new FlowLayout(FlowLayout.LEFT, 5, 0));
// which server
serverCB = new JComboBox();
serverCB.setModel(manage.getServersCB().getModel());
serverCB.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
String server = (String) serverCB.getSelectedItem();
setServer(server);
}
});
// serverCB.setModel(manage.getServers().getModel());
topPanel.add(new JLabel("server:"));
topPanel.add(serverCB);
// the date selectors
startDateField = new JTextArea(" ");
endDateField = new JTextArea(" ");
topPanel.add(new JLabel("Start Date:"));
topPanel.add(startDateField);
topPanel.add(new JLabel("End Date:"));
topPanel.add(endDateField);
AbstractAction showAction =
new AbstractAction() {
public void actionPerformed(ActionEvent e) {
showLogs();
}
};
BAMutil.setActionProperties(showAction, "Import", "get logs", false, 'G', -1);
BAMutil.addActionToContainer(topPanel, showAction);
AbstractAction filterAction =
new AbstractAction() {
public void actionPerformed(ActionEvent e) {
Boolean state = (Boolean) getValue(BAMutil.STATE);
removeTestReq = state.booleanValue();
}
};
BAMutil.setActionProperties(filterAction, "time", "remove test Requests", true, 'F', -1);
BAMutil.addActionToContainer(topPanel, filterAction);
AbstractAction filter2Action =
new AbstractAction() {
public void actionPerformed(ActionEvent e) {
Boolean state = (Boolean) getValue(BAMutil.STATE);
problemsOnly = state.booleanValue();
}
};
BAMutil.setActionProperties(filter2Action, "time", "only show problems", true, 'F', -1);
BAMutil.addActionToContainer(topPanel, filter2Action);
AbstractAction infoAction =
new AbstractAction() {
public void actionPerformed(ActionEvent e) {
Formatter f = new Formatter();
showInfo(f);
ta.setText(f.toString());
infoWindow.show();
}
};
BAMutil.setActionProperties(
infoAction, "Information", "info on selected logs", false, 'I', -1);
BAMutil.addActionToContainer(topPanel, infoAction);
setLayout(new BorderLayout());
add(topPanel, BorderLayout.NORTH);
}
public NcmlEditor(JPanel buttPanel, PreferencesExt prefs) {
this.prefs = prefs;
fileChooser = new FileManager(null, null, null, (PreferencesExt) prefs.node("FileManager"));
AbstractAction coordAction =
new AbstractAction() {
public void actionPerformed(ActionEvent e) {
addCoords = (Boolean) getValue(BAMutil.STATE);
String tooltip = addCoords ? "add Coordinates is ON" : "add Coordinates is OFF";
coordButt.setToolTipText(tooltip);
}
};
addCoords = prefs.getBoolean("coordState", false);
String tooltip2 = addCoords ? "add Coordinates is ON" : "add Coordinates is OFF";
BAMutil.setActionProperties(coordAction, "addCoords", tooltip2, true, 'C', -1);
coordAction.putValue(BAMutil.STATE, Boolean.valueOf(addCoords));
coordButt = BAMutil.addActionToContainer(buttPanel, coordAction);
protoChooser = new ComboBox((PreferencesExt) prefs.node("protoChooser"));
addProtoChoices();
buttPanel.add(protoChooser);
protoChooser.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
String ptype = (String) protoChooser.getSelectedItem();
String proto = protoMap.get(ptype);
if (proto != null) {
editor.setText(proto);
}
}
});
editor = new JEditorPane();
// Instantiate a XMLEditorKit with wrapping enabled.
XMLEditorKit kit = new XMLEditorKit(false);
// Set the wrapping style.
kit.setWrapStyleWord(true);
editor.setEditorKit(kit);
// Set the font style.
editor.setFont(new Font("Monospaced", Font.PLAIN, 12));
// Set the tab size
editor.getDocument().putProperty(PlainDocument.tabSizeAttribute, 2);
// Enable auto indentation.
editor.getDocument().putProperty(XMLDocument.AUTO_INDENTATION_ATTRIBUTE, true);
// Enable tag completion.
editor.getDocument().putProperty(XMLDocument.TAG_COMPLETION_ATTRIBUTE, true);
// Initialise the folding
kit.setFolding(true);
// Set a style
kit.setStyle(XMLStyleConstants.ATTRIBUTE_NAME, Color.RED, Font.BOLD);
// Put the editor in a panel that will force it to resize, when a different view is choosen.
ScrollableEditorPanel editorPanel = new ScrollableEditorPanel(editor);
JScrollPane scroller = new JScrollPane(editorPanel);
// Add the number margin as a Row Header View
scroller.setRowHeaderView(new LineNumberMargin(editor));
AbstractAction wrapAction =
new AbstractAction() {
public void actionPerformed(ActionEvent e) {
XMLEditorKit kit = (XMLEditorKit) editor.getEditorKit();
kit.setLineWrappingEnabled(!kit.isLineWrapping());
editor.updateUI();
}
};
BAMutil.setActionProperties(wrapAction, "Wrap", "Toggle Wrapping", false, 'W', -1);
BAMutil.addActionToContainer(buttPanel, wrapAction);
AbstractAction saveAction =
new AbstractAction() {
public void actionPerformed(ActionEvent e) {
String location = (ds == null) ? ncmlLocation : ds.getLocation();
if (location == null) location = "test";
int pos = location.lastIndexOf(".");
if (pos > 0) location = location.substring(0, pos);
String filename = fileChooser.chooseFilenameToSave(location + ".ncml");
if (filename == null) return;
if (doSaveNcml(editor.getText(), filename)) ncmlLocation = filename;
}
};
BAMutil.setActionProperties(saveAction, "Save", "Save NcML", false, 'S', -1);
BAMutil.addActionToContainer(buttPanel, saveAction);
AbstractAction netcdfAction =
new AbstractAction() {
public void actionPerformed(ActionEvent e) {
if (outChooser == null) {
outChooser = new NetcdfOutputChooser((Frame) null);
outChooser.addPropertyChangeListener(
"OK",
new PropertyChangeListener() {
public void propertyChange(PropertyChangeEvent evt) {
writeNetcdf((NetcdfOutputChooser.Data) evt.getNewValue());
}
});
}
String location = (ds == null) ? ncmlLocation : ds.getLocation();
if (location == null) location = "test";
int pos = location.lastIndexOf(".");
if (pos > 0) location = location.substring(0, pos);
outChooser.setOutputFilename(location);
outChooser.setVisible(true);
}
};
BAMutil.setActionProperties(netcdfAction, "netcdf", "Write netCDF file", false, 'N', -1);
BAMutil.addActionToContainer(buttPanel, netcdfAction);
AbstractAction transAction =
new AbstractAction() {
public void actionPerformed(ActionEvent e) {
doTransform(editor.getText());
}
};
BAMutil.setActionProperties(
transAction,
"Import",
"read textArea through NcMLReader\n write NcML back out via resulting dataset",
false,
'T',
-1);
BAMutil.addActionToContainer(buttPanel, transAction);
AbstractButton compareButton = BAMutil.makeButtcon("Select", "Check NcML", false);
compareButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
Formatter f = new Formatter();
checkNcml(f);
infoTA.setText(f.toString());
infoTA.gotoTop();
infoWindow.show();
}
});
buttPanel.add(compareButton);
setLayout(new BorderLayout());
add(scroller, BorderLayout.CENTER);
// the info window
infoTA = new TextHistoryPane();
infoWindow = new IndependentWindow("Extra Information", BAMutil.getImage("netcdfUI"), infoTA);
infoWindow.setBounds(
(Rectangle) prefs.getBean("InfoWindowBounds", new Rectangle(300, 300, 500, 300)));
}
public void save() {
fileChooser.save();
prefs.putBeanObject("InfoWindowBounds", infoWindow.getBounds());
}