@Test
public void testGetLeaves() throws Exception {
Assume.assumeTrue(!GraphicsEnvironment.isHeadless());
final CatalogTree catalogTree = new CatalogTree(null, new DefaultAppContext(""), null);
List<InvDataset> datasets = new ArrayList<InvDataset>();
InvCatalog catalog = new InvCatalogImpl("catalogName", "1.0", new URI("http://x.y"));
final InvDataset rootDataset = createDataset(catalog, "first", "OPENDAP");
rootDataset.getDatasets().add(createDataset(catalog, "second", "OPENDAP"));
rootDataset.getDatasets().add(createDataset(catalog, "third", "OPENDAP"));
datasets.add(rootDataset);
catalogTree.setNewRootDatasets(datasets);
OpendapLeaf[] leaves = catalogTree.getLeaves();
Arrays.sort(
leaves,
new Comparator<OpendapLeaf>() {
@Override
public int compare(OpendapLeaf o1, OpendapLeaf o2) {
return o1.getName().compareTo(o2.getName());
}
});
assertEquals(2, leaves.length);
assertEquals("second", leaves[0].getName());
assertEquals("third", leaves[1].getName());
}
public void init() throws ServletException {
super.init();
// allow = ThreddsConfig.getBoolean("NetcdfSubsetService.allow", true);
// String radarLevel2Dir = ThreddsConfig.get("NetcdfSubsetService.radarLevel2DataDir",
// "/data/ldm/pub/native/radar/level2/");
// if (!allow) return;
contentPath = ServletUtil.getContentPath();
rm = new RadarMethods(contentPath, logServerStartup);
// read in radarCollections.xml catalog
InvCatalogFactory factory = InvCatalogFactory.getDefaultFactory(false); // no validation
cat = readCatalog(factory, getPath() + catName, contentPath + getPath() + catName);
if (cat == null) {
logServerStartup.info("cat initialization failed");
return;
}
// URI tmpURI = cat.getBaseURI();
cat.setBaseURI(catURI);
// get path and location from cat
List parents = cat.getDatasets();
for (int i = 0; i < parents.size(); i++) {
InvDataset top = (InvDataset) parents.get(i);
datasets = top.getDatasets(); // dataset scans
for (int j = 0; j < datasets.size(); j++) {
InvDatasetScan ds = (InvDatasetScan) datasets.get(j);
if (ds.getPath() != null) {
dataLocation.put(ds.getPath(), ds.getScanLocation());
logServerStartup.info("path =" + ds.getPath() + " location =" + ds.getScanLocation());
}
ds.setXlinkHref(ds.getPath() + "/dataset.xml");
}
}
logServerStartup.info(getClass().getName() + " initialization complete ");
} // end init
/**
* Getting invDataset list for a single radar station.
*
* @param stnName radar station name
* @param start of the time
* @param end of the time
* @return list of invDataset
* @throws IOException java io exception
*/
private DqcRadarDatasetInfo queryRadarStation(String stnName, Date start, Date end)
throws IOException {
// http://motherlode.ucar.edu:9080/thredds/idd/radarLevel2?returns=catalog&stn=KFTG&dtime=latest
StringBuffer queryb = new StringBuffer();
queryb.append(dqc.getQuery().getUriResolved().toString());
queryb.append("serviceType=OPENDAP");
queryb.append("&stn=" + stnName);
if ((start == null) && (end == null)) {
queryb.append("&dtime=all");
} else {
String stime = DateUtil.getTimeAsISO8601(start);
String etime = DateUtil.getTimeAsISO8601(end);
queryb.append("&dateStart=" + stime);
queryb.append("&dateEnd=" + etime);
}
URI catalogURI;
try {
catalogURI = new URI(queryb.toString());
} catch (java.net.URISyntaxException e) {
throw new IOException("** MalformedURLException on URL <" + ">\n" + e.getMessage() + "\n");
}
InvCatalogFactory factory = new InvCatalogFactory("default", false);
InvCatalogImpl catalog = (InvCatalogImpl) factory.readXML(catalogURI);
StringBuilder buff = new StringBuilder();
if (!catalog.check(buff)) {
throw new IOException("Invalid catalog <" + catalogURI + ">\n" + buff.toString());
}
List datasets = catalog.getDatasets();
InvDataset idata = (InvDataset) datasets.get(0);
// List ddate = idata.getDates();
ArrayList dsets = (ArrayList) idata.getDatasets();
ArrayList absTimeList = new ArrayList();
ArrayList dURIList = new ArrayList();
ArrayList dInvList = new ArrayList();
for (int i = 0; i < dsets.size(); i++) {
InvDataset tdata = (InvDataset) dsets.get(i);
List acess = tdata.getAccess();
List dates = tdata.getDates();
InvAccess ia = (InvAccess) acess.get(0);
URI d = ia.getStandardUri();
Date date = DateUnit.getStandardOrISO(dates.get(0).toString());
absTimeList.add(date);
dURIList.add(new DatasetURIInfo(d, date));
dInvList.add(new InvDatasetInfo(tdata, date));
}
DqcRadarDatasetInfo dri = new DqcRadarDatasetInfo(absTimeList, dURIList, dInvList);
return dri;
}
/**
* Getting URI for a single radar station.
*
* @param stnName radar station name
* @param productID _more_
* @param absTime is absolute time
* @return InvDataset
* @throws IOException java io exception
*/
private InvDataset queryRadarStation(String stnName, String productID, Date absTime)
throws IOException {
String stime = DateUtil.getTimeAsISO8601(absTime).replaceAll("GMT", "");
// construct a query like this:
// http://motherlode.ucar.edu:9080/thredds/idd/radarLevel2?returns=catalog&stn=KFTG&dtime=latest
StringBuilder queryb = new StringBuilder();
String baseURI = dsc_location.replaceFirst("/dataset.xml", "?");
queryb.append(baseURI);
queryb.append("&stn=" + stnName);
if (productID != null) {
queryb.append("&var=" + productID);
}
if (absTime == null) {
queryb.append("&time=present");
} else {
queryb.append("&time=" + stime);
}
URI catalogURI;
try {
catalogURI = new URI(queryb.toString());
} catch (java.net.URISyntaxException e) {
throw new IOException("** MalformedURLException on URL <" + ">\n" + e.getMessage() + "\n");
}
InvCatalogFactory factory = new InvCatalogFactory("default", false);
// visad.util.Trace.call1("TDSRadarDatasetCollection.readXML");
InvCatalogImpl catalog = (InvCatalogImpl) factory.readXML(catalogURI);
// visad.util.Trace.call2("TDSRadarDatasetCollection.readXML");
// visad.util.Trace.call1("TDSRadarDatasetCollection.checkCatalog");
StringBuilder buff = new StringBuilder();
if (!catalog.check(buff)) {
throw new IOException("Invalid catalog <" + catalogURI + ">\n" + buff.toString());
}
// visad.util.Trace.call2("TDSRadarDatasetCollection.checkCatalog");
// catalog.writeXML(System.out); // debugg
List<InvDataset> datasets = catalog.getDatasets();
InvDataset idata = (InvDataset) datasets.get(0);
List<InvDataset> dsets = idata.getDatasets();
InvDataset tdata = (InvDataset) dsets.get(0);
return tdata;
}
private InvDatasetImpl openResolver(
String urlString, ucar.nc2.util.CancelTask task, Result result) {
InvCatalogFactory catFactory = new InvCatalogFactory("", false);
InvCatalogImpl catalog = catFactory.readXML(urlString);
if (catalog == null) {
result.errLog.format("Couldnt open Resolver %s %n ", urlString);
return null;
}
StringBuilder buff = new StringBuilder();
if (!catalog.check(buff)) {
result.errLog.format("Invalid catalog from Resolver <%s>%n%s%n", urlString, buff.toString());
result.fatalError = true;
return null;
}
InvDataset top = catalog.getDataset();
if (top.hasAccess()) return (InvDatasetImpl) top;
else {
java.util.List datasets = top.getDatasets();
return (InvDatasetImpl) datasets.get(0);
}
}
/**
* Getting URI for a single radar station.
*
* @param stnName radar station name
* @param absTime is absolute time
* @return InvDataset
* @throws IOException java io exception
*/
private InvDataset queryRadarStation(String stnName, Date absTime) throws IOException {
String stime = DateUtil.getTimeAsISO8601(absTime);
// construct a query like this:
// http://motherlode.ucar.edu:9080/thredds/idd/radarLevel2?returns=catalog&stn=KFTG&dtime=latest
StringBuffer queryb = new StringBuffer();
queryb.append(dqc.getQuery().getUriResolved().toString());
queryb.append("serviceType=OPENDAP");
queryb.append("&stn=" + stnName);
queryb.append("&dtime=" + stime);
URI catalogURI;
try {
catalogURI = new URI(queryb.toString());
} catch (java.net.URISyntaxException e) {
throw new IOException("** MalformedURLException on URL <" + ">\n" + e.getMessage() + "\n");
}
InvCatalogFactory factory = new InvCatalogFactory("default", false);
InvCatalogImpl catalog = (InvCatalogImpl) factory.readXML(catalogURI);
StringBuilder buff = new StringBuilder();
if (!catalog.check(buff)) {
throw new IOException("Invalid catalog <" + catalogURI + ">\n" + buff.toString());
}
List datasets = catalog.getDatasets();
InvDataset idata = (InvDataset) datasets.get(0);
ArrayList dsets = (ArrayList) idata.getDatasets();
InvDataset tdata = (InvDataset) dsets.get(0);
return tdata;
}
/**
* Getting invDataset list for a single radar station.
*
* @param stnName radar station name
* @param productID _more_
* @param start of the time
* @param end of the time
* @return list of invDataset
* @throws IOException java io exception
*/
private TDSRadarDatasetInfo queryRadarStation(
String stnName, String productID, Date start, Date end) throws IOException {
// http://motherlode.ucar.edu:9080/thredds/idd/radarLevel2?returns=catalog&stn=KFTG&dtime=latest
StringBuilder queryb = new StringBuilder();
String baseURI = dsc_location.replaceFirst("/dataset.xml", "?");
queryb.append(baseURI);
queryb.append("stn=" + stnName);
if (productID != null) {
queryb.append("&var=" + productID);
}
if ((start == null) && (end == null)) {
queryb.append("&time=present");
} else if (end == null) {
String stime = DateUtil.getTimeAsISO8601(start).replaceAll("GMT", "");
queryb.append("&time_start=" + stime);
queryb.append("&time_end=present");
} else {
String stime = DateUtil.getTimeAsISO8601(start).replaceAll("GMT", "");
String etime = DateUtil.getTimeAsISO8601(end).replaceAll("GMT", "");
queryb.append("&time_start=" + stime);
queryb.append("&time_end=" + etime);
}
URI catalogURI;
try {
catalogURI = new URI(queryb.toString());
} catch (java.net.URISyntaxException e) {
throw new IOException("** MalformedURLException on URL <" + ">\n" + e.getMessage() + "\n");
}
InvCatalogFactory factory = new InvCatalogFactory("default", false);
// visad.util.Trace.call1("TDSRadarDatasetCollection.readXML");
InvCatalogImpl catalog = (InvCatalogImpl) factory.readXML(catalogURI);
// visad.util.Trace.call2("TDSRadarDatasetCollection.readXML");
StringBuilder buff = new StringBuilder();
// visad.util.Trace.call1("TDSRadarDatasetCollection.checkCatalog");
if (!catalog.check(buff)) {
throw new IOException("Invalid catalog <" + catalogURI + ">\n" + buff.toString());
}
// visad.util.Trace.call2("TDSRadarDatasetCollection.checkCatalog");
List<InvDataset> datasets = catalog.getDatasets();
InvDataset idata = (InvDataset) datasets.get(0);
List<InvDataset> dsets = idata.getDatasets();
List<Date> absTimeList = new ArrayList<Date>();
List<DatasetURIInfo> dURIList = new ArrayList<DatasetURIInfo>();
List<InvDatasetInfo> dInvList = new ArrayList<InvDatasetInfo>();
// visad.util.Trace.call1("TDSRadarDatasetCollection.getLists");
for (InvDataset tdata : dsets) {
List<InvAccess> acess = tdata.getAccess();
List<DateType> dates = tdata.getDates();
InvAccess ia = (InvAccess) acess.get(0);
URI d = ia.getStandardUri();
Date date = ((DateType) dates.get(0)).getDate();
absTimeList.add(date);
dURIList.add(new DatasetURIInfo(d, date));
dInvList.add(new InvDatasetInfo(tdata, date));
}
// visad.util.Trace.call2("TDSRadarDatasetCollection.getLists");
TDSRadarDatasetInfo dri = new TDSRadarDatasetInfo(absTimeList, dURIList, dInvList);
return dri;
}
public void read(String src) {
// addXML ax = new addXML();
InvCatalogFactory factory = new InvCatalogFactory("default", false);
InvCatalog catalog = (InvCatalog) factory.readXML(src);
StringBuilder buff = new StringBuilder();
int count = catalog.getDatasets().size();
if (!catalog.check(buff, true)) {
log.error("Invalid catalog <" + src + ">\n" + buff.toString());
} else {
for (int index = 0; index < count; index++) {
factory = new InvCatalogFactory("default", false);
catalog = (InvCatalog) factory.readXML(src);
InvDataset invDataset = catalog.getDatasets().get(index);
System.out.println(invDataset.getName());
String file = "/home/rhs/NCAR/las_categories_";
try {
file = file + JDOMUtils.MD5Encode(invDataset.getName()) + ".xml";
} catch (UnsupportedEncodingException e) {
e.printStackTrace();
}
Element las_categories = new Element("las_categories");
// CategoryBean cb = new CategoryBean();
// cb.setName(invDataset.getName());
// cb.setID(invDataset.getID());
// // This is the top level...
// //cb.setContributors(getContributors(invDataset));
// Vector topCats = new Vector();
for (Iterator topLevelIt = invDataset.getDatasets().iterator(); topLevelIt.hasNext(); ) {
InvDataset topDS = (InvDataset) topLevelIt.next();
// CategoryBean topCB = new CategoryBean();
// topCB.setName(topDS.getName());
String id = topDS.getID();
if (id == null) {
try {
id = "id_" + JDOMUtils.MD5Encode(topDS.getName());
} catch (UnsupportedEncodingException e) {
id = "id_" + String.valueOf(Math.random());
}
}
System.out.println("top: " + topDS.getName() + ", " + topDS.getID());
// topCB.setID(id);
// for (Iterator subDatasetsIt = topDS.getDatasets().iterator();
// subDatasetsIt.hasNext(); ) {
// InvDataset subDataset = (InvDataset) subDatasetsIt.next();
// topCB.addCatID(subDataset.getID());
// // These will be the catalog containers that will contain the aggregations...
// for (Iterator grandChildrenIt = subDataset.getDatasets().iterator();
// grandChildrenIt.hasNext(); ) {
// InvDataset grandChild = (InvDataset) grandChildrenIt.next();
// if ( grandChild.hasAccess() && grandChild.getName().contains("aggregation")) {
// // We are done.
// String url = null;
// InvAccess access = null;
// for (Iterator ait = grandChild.getAccess().iterator(); ait.hasNext(); ) {
// access = (InvAccess) ait.next();
// if (access.getService().getServiceType() == ServiceType.DODS ||
// access.getService().getServiceType() == ServiceType.OPENDAP ||
// access.getService().getServiceType() == ServiceType.NETCDF) {
// url = access.getStandardUrlName();
// }
// }
// if ( url != null && url.contains("aggregation") ){
// FilterBean filter = new FilterBean();
// filter.setAction("apply-variable");
// String tag = grandChild.getID();
// filter.setContainstag(tag);
// topCB.addFilter(filter);
// topCB.addCatID(grandChild.getID());
// }
// }
// }
// }
// if ( topCB.getFilters().size() > 0 ) {
// topCats.add(topCB);
// }
}
// if ( topCats.size() > 0 ) {
// cb.setCategories(topCats);
// }
// las_categories.addContent(cb.toXml());
// ax.processESGCategories(invDataset, las_categories);
// LASDocument document = new LASDocument();
// document.setRootElement(las_categories);
// System.out.println("Writing "+file+" for "+invDataset.getName());
// document.write(file);
// document = null;
}
}
}