// ## operation checkChemkinMessage()
public void checkChemkinMessage() {
// #[ operation checkChemkinMessage()
try {
String dir = System.getProperty("RMG.workingDirectory");
String filename = "chemkin/chem.message";
FileReader fr = new FileReader(filename);
BufferedReader br = new BufferedReader(fr);
String line = br.readLine().trim();
if (line.startsWith("NO ERRORS FOUND ON INPUT")) {
return;
} else if (line.startsWith("WARNING...THERE IS AN ERROR IN THE LINKING FILE")) {
System.out.println("Error in chemkin linking to reactor!");
System.exit(0);
} else {
System.out.println("Unknown message in chem.message!");
System.exit(0);
}
} catch (Exception e) {
System.out.println("Can't read chem.message!");
System.out.println(e.getMessage());
System.exit(0);
}
// #]
}
// ## operation runReactor()
public void runReactor() {
// #[ operation runReactor()
// run reactor
String dir = System.getProperty("RMG.workingDirectory");
try {
// system call for reactor
String[] command = {dir + "/software/reactorModel/reactor.exe"};
File runningDir = new File("chemkin");
Process reactor = Runtime.getRuntime().exec(command, null, runningDir);
InputStream ips = reactor.getInputStream();
InputStreamReader is = new InputStreamReader(ips);
BufferedReader br = new BufferedReader(is);
String line = null;
while ((line = br.readLine()) != null) {
// System.out.println(line);
}
int exitValue = reactor.waitFor();
} catch (Exception e) {
System.out.println("Error in running reactor!");
System.out.println(e.getMessage());
System.exit(0);
}
// #]
}
/** ** Main entery point for debugging/testing */
public static void main(String argv[]) {
RTConfig.setCommandLineArgs(argv);
Print.setAllOutputToStdout(true);
Print.setEncoding(ENCODING_UTF8);
String accountID = RTConfig.getString(ARG_ACCOUNT, "demo");
GoogleGeocodeV2 gn = new GoogleGeocodeV2("google", null, null);
/* reverse geocode */
if (RTConfig.hasProperty(ARG_REVGEOCODE)) {
GeoPoint gp = new GeoPoint(RTConfig.getString(ARG_REVGEOCODE, null));
if (!gp.isValid()) {
Print.logInfo("Invalid GeoPoint specified");
System.exit(1);
}
Print.logInfo("Reverse-Geocoding GeoPoint: " + gp);
Print.sysPrintln(
"RevGeocode = " + gn.getReverseGeocode(gp, null /*localeStr*/, false /*cache*/));
// Note: Even though the values are printed in UTF-8 character encoding, the
// characters may not appear to be property displayed if the console display
// does not support UTF-8.
System.exit(0);
}
/* no options */
Print.sysPrintln("No options specified");
System.exit(1);
}
private ClassLoaderStrategy getClassLoaderStrategy(String fullyQualifiedClassName)
throws Exception {
try {
// Get just the package name
StringBuffer sb = new StringBuffer(fullyQualifiedClassName);
sb.delete(sb.lastIndexOf("."), sb.length());
currentPackage = sb.toString();
// Retrieve the Java classpath from the system properties
String cp = System.getProperty("java.class.path");
String sepChar = System.getProperty("path.separator");
String[] paths = StringUtils.pieceList(cp, sepChar.charAt(0));
ClassLoaderStrategy cl =
ClassLoaderUtil.getClassLoader(ClassLoaderUtil.FILE_SYSTEM_CLASS_LOADER, new String[] {});
// Iterate through paths until class with the specified name is found
String classpath = StringUtils.replaceChar(currentPackage, '.', File.separatorChar);
for (int i = 0; i < paths.length; i++) {
Class[] classes = cl.getClasses(paths[i] + File.separatorChar + classpath, currentPackage);
for (int j = 0; j < classes.length; j++) {
if (classes[j].getName().equals(fullyQualifiedClassName)) {
return ClassLoaderUtil.getClassLoader(
ClassLoaderUtil.FILE_SYSTEM_CLASS_LOADER, new String[] {paths[i]});
}
}
}
throw new Exception("Class could not be found.");
} catch (Exception e) {
System.err.println("Exception creating class loader strategy.");
System.err.println(e.getMessage());
throw e;
}
}
@Override
public VPackage parse() {
logger.debug("Starting parsing package: " + xmlFile.getAbsolutePath());
long startParsing = System.currentTimeMillis();
try {
Document document = getDocument();
Element root = document.getDocumentElement();
_package = new VPackage(xmlFile);
Node name = root.getElementsByTagName(EL_NAME).item(0);
_package.setName(name.getTextContent());
Node descr = root.getElementsByTagName(EL_DESCRIPTION).item(0);
_package.setDescription(descr.getTextContent());
NodeList list = root.getElementsByTagName(EL_CLASS);
boolean initPainters = false;
for (int i = 0; i < list.getLength(); i++) {
PackageClass pc = parseClass((Element) list.item(i));
if (pc.getPainterName() != null) {
initPainters = true;
}
}
if (initPainters) {
_package.initPainters();
}
logger.info(
"Parsing the package '{}' finished in {}ms.\n",
_package.getName(),
(System.currentTimeMillis() - startParsing));
} catch (Exception e) {
collector.collectDiagnostic(e.getMessage(), true);
if (RuntimeProperties.isLogDebugEnabled()) {
e.printStackTrace();
}
}
try {
checkProblems("Error parsing package file " + xmlFile.getName());
} catch (Exception e) {
return null;
}
return _package;
}
protected void check() {
if (map == null) {
Connection connection = null;
Statement statement = null;
ResultSet results = null;
try {
connection = dataSource.getConnection();
statement = connection.createStatement();
long start = System.currentTimeMillis();
String s = getFindSql(identifier);
if (log.isTraceEnabled()) {
log.trace("About to execute " + s + " because ", new Exception());
}
results = statement.executeQuery(s);
ResultSetMetaData meta = results.getMetaData();
map = new HashMap<String, String>();
if (results.next()) {
for (int i = 1; i <= meta.getColumnCount(); i++) {
String value = org.mmbase.util.Casting.toString(results.getString(i));
map.put(meta.getColumnName(i).toLowerCase(), value);
}
}
long duration = (System.currentTimeMillis() - start);
if (duration > 500) {
log.warn("Executed " + s + " in " + duration + " ms");
} else if (duration > 100) {
log.debug("Executed " + s + " in " + duration + " ms");
} else {
log.trace("Executed " + s + " in " + duration + " ms");
}
} catch (Exception e) {
throw new RuntimeException(e.getMessage(), e);
} finally {
if (results != null)
try {
results.close();
} catch (Exception e) {
}
if (statement != null)
try {
statement.close();
} catch (Exception e) {
}
if (connection != null)
try {
connection.close();
} catch (Exception e) {
}
}
}
}
private static SAXParserFactory createFastSAXParserFactory()
throws ParserConfigurationException, SAXException {
if (fastParserFactoryClass == null) {
try {
fastParserFactoryClass =
Class.forName("org.apache.crimson.jaxp.SAXParserFactoryImpl"); // NOI18N
} catch (Exception ex) {
useFastSAXParserFactory = false;
if (System.getProperty("java.version").startsWith("1.4")) { // NOI18N
ErrorManager.getDefault().notify(ErrorManager.INFORMATIONAL, ex);
}
}
}
if (fastParserFactoryClass != null) {
try {
SAXParserFactory factory = (SAXParserFactory) fastParserFactoryClass.newInstance();
return factory;
} catch (Exception ex) {
useFastSAXParserFactory = false;
throw new ParserConfigurationException(ex.getMessage());
}
}
return SAXParserFactory.newInstance();
}
public static List<GenerationTarget> getTargets() {
if (m_targets != null) {
return m_targets;
}
m_targets = new ArrayList<GenerationTarget>();
URL location = getClassLocation();
if (location == null) return m_targets;
if (location.getProtocol().equals("file")) {
String encoded = location.getFile();
File classFileLocation = null;
try {
String decoded = URLDecoder.decode(encoded, "UTF-8"); // important
classFileLocation = new File(decoded);
} catch (UnsupportedEncodingException ex) {
ex.printStackTrace();
} // end try
if (classFileLocation != null) {
File root = classFileLocation;
String classname = GenerationTarget.class.getName();
int levels = countNbChars(classname, '.');
// iterate to the root
for (int i = 0; i < levels; i++) {
root = root.getParentFile();
} // end while
scanFolder(classFileLocation.getParentFile(), root, m_targets);
}
} else if (location.getProtocol().equals("jar")) {
String jarname = location.toExternalForm();
int index = jarname.indexOf(".jar!");
if (index > -1) jarname = jarname.substring(0, index + 4);
index = jarname.indexOf("jar:");
if (index > -1) {
jarname = jarname.substring(4);
}
index = jarname.indexOf("file:/");
if (index > -1) {
jarname = jarname.substring(6);
}
index = jarname.indexOf("file:");
if (index > -1) {
jarname = jarname.substring(5);
}
scanJar(new File(jarname), new File(System.getProperty("java.io.tmpdir")), m_targets);
}
return m_targets;
}
/**
* @param args 1. rddl description file name (can be directory), in RDDL format, with complete
* path 2. (optional) port number 3. (optional) random seed
*/
public static void main(String[] args) {
// StateViz state_viz = new GenericScreenDisplay(true);
StateViz state_viz = new NullScreenDisplay(false);
ArrayList<RDDL> rddls = new ArrayList<RDDL>();
int port = PORT_NUMBER;
if (args.length < 1) {
System.out.println(
"usage: rddlfilename (optional) portnumber random-seed state-viz-class-name");
System.out.println("\nexample 1: Server rddlfilename");
System.out.println("example 2: Server rddlfilename 2323");
System.out.println("example 3: Server rddlfilename 2323 0 rddl.viz.GenericScreenDisplay");
System.exit(1);
}
try {
// Load RDDL files
RDDL rddl = new RDDL();
File f = new File(args[0]);
if (f.isDirectory()) {
for (File f2 : f.listFiles())
if (f2.getName().endsWith(".rddl")) {
System.out.println("Loading: " + f2);
rddl.addOtherRDDL(parser.parse(f2));
}
} else rddl.addOtherRDDL(parser.parse(f));
if (args.length > 1) {
port = Integer.valueOf(args[1]);
}
ServerSocket socket1 = new ServerSocket(port);
if (args.length > 2) {
Server.rand = new Random(Integer.valueOf(args[2]));
} else {
Server.rand = new Random(DEFAULT_SEED);
}
if (args.length > 3) {
state_viz = (StateViz) Class.forName(args[3]).newInstance();
}
System.out.println("RDDL Server Initialized");
while (true) {
Socket connection = socket1.accept();
Runnable runnable = new Server(connection, ++ID, rddl, state_viz);
Thread thread = new Thread(runnable);
thread.start();
}
} catch (Exception e) {
// TODO Auto-generated catch block
System.out.println(e);
e.printStackTrace();
}
}
public static void writeChemkinInputFile(ReactionSystem rs) {
// #[ operation writeChemkinInputFile(ReactionModel,SystemSnapshot)
StringBuilder result = new StringBuilder();
result.append(writeChemkinHeader());
result.append(writeChemkinElement());
double start = System.currentTimeMillis();
result.append(writeChemkinSpecies(rs.reactionModel, rs.initialStatus));
result.append(writeChemkinThermo(rs.reactionModel));
Global.chemkinThermo = Global.chemkinThermo + (System.currentTimeMillis() - start) / 1000 / 60;
start = System.currentTimeMillis();
result.append(writeChemkinPdepReactions(rs));
Global.chemkinReaction =
Global.chemkinReaction + (System.currentTimeMillis() - start) / 1000 / 60;
String dir = System.getProperty("RMG.workingDirectory");
if (!dir.endsWith("/")) dir += "/";
dir += "software/reactorModel/";
String file = "chemkin/chem.inp";
try {
FileWriter fw = new FileWriter(file);
fw.write(result.toString());
fw.close();
} catch (Exception e) {
System.out.println("Error in writing chemkin input file chem.inp!");
System.out.println(e.getMessage());
System.exit(0);
}
// #]
}
public static void main(String args[]) {
// is there anything to do?
if (args.length == 0) {
printUsage();
System.exit(1);
}
if (args.length > 1) {
if (args[1].equals("yes")) {
fStdOut = true;
}
}
new Test(args[0]);
}
@Test
public void parseRootElementWithFile() throws Exception {
String xml =
"<?xml version=\"1.0\"?><html><head /><body><p>Good morning</p><p>How are you?</p></body></html>";
File f = new File(System.getProperty("java.io.tmpdir"), "test.xml");
Utils.writeFile(f, xml);
f.deleteOnExit();
DocumentBuilder builder = builderFactory.newDocumentBuilder();
Document doc = builder.parse(f);
Element root = doc.getDocumentElement();
Assert.assertEquals("html", root.getNodeName());
}
// ## operation writeChemkinInputFile(ReactionModel,SystemSnapshot)
public static void writeChemkinInputFile(
final ReactionModel p_reactionModel, SystemSnapshot p_beginStatus) {
// #[ operation writeChemkinInputFile(ReactionModel,SystemSnapshot)
StringBuilder result = new StringBuilder();
result.append(writeChemkinHeader());
result.append(writeChemkinElement());
double start = System.currentTimeMillis();
result.append(writeChemkinSpecies(p_reactionModel, p_beginStatus));
result.append(writeChemkinThermo(p_reactionModel));
Global.chemkinThermo = Global.chemkinThermo + (System.currentTimeMillis() - start) / 1000 / 60;
start = System.currentTimeMillis();
result.append(
writeChemkinPdepReactions(
p_reactionModel, p_beginStatus)); // 10/26/07 gmagoon: changed to pass p_beginStatus
// result.append(writeChemkinPdepReactions(p_reactionModel));
Global.chemkinReaction =
Global.chemkinReaction + (System.currentTimeMillis() - start) / 1000 / 60;
String dir = System.getProperty("RMG.workingDirectory");
if (!dir.endsWith("/")) dir += "/";
dir += "software/reactorModel/";
String file = "chemkin/chem.inp";
try {
FileWriter fw = new FileWriter(file);
fw.write(result.toString());
fw.close();
} catch (Exception e) {
System.out.println("Error in writing chemkin input file chem.inp!");
System.out.println(e.getMessage());
System.exit(0);
}
if (PDepRateConstant.getMode() == Mode.CHEBYSHEV
|| PDepRateConstant.getMode() == Mode.PDEPARRHENIUS
|| PDepRateConstant.getMode() == Mode.RATE) {
StringBuilder gridOfRateCoeffs = new StringBuilder();
gridOfRateCoeffs.append(writeGridOfRateCoeffs(p_reactionModel));
String newFile = "chemkin/tableOfRateCoeffs.txt";
try {
FileWriter fw = new FileWriter(newFile);
fw.write(gridOfRateCoeffs.toString());
fw.close();
} catch (Exception e) {
System.out.println("Error in writing tableOfRateCoeffs.txt");
System.out.println(e.getMessage());
System.exit(0);
}
}
// #]
}
public String toString() {
String endl = System.getProperty("line.separator");
String str = "";
if (numRunningJobs != -1) {
str += "running jobs: " + numRunningJobs + endl;
}
if (numWaitingJobs != -1) {
str += "waiting jobs: " + numWaitingJobs + endl;
}
if (usedProcessors != -1) {
str += "used processors: " + usedProcessors + endl;
}
return str;
}
/**
* Parses mathml from the input into a DOM document. Split out so that subclass can call.
*
* @param params Parameters including MathML
* @param result Blank result object
* @param start Request start time (milliseconds since epoch)
* @return Document or null if failed (in which case should return result)
*/
protected Document parseMathml(MathsEpsParams params, MathsEpsReturn result, long start)
throws Exception {
try {
Document mathml = parseMathml(params.getMathml());
if (SHOWPERFORMANCE) {
System.err.println("Parse DOM: " + (System.currentTimeMillis() - start));
}
return mathml;
} catch (SAXParseException e) {
int line = e.getLineNumber(), col = e.getColumnNumber();
result.setError("MathML parse error at " + line + ":" + col + " - " + e.getMessage());
return null;
}
}
static ArrayList<PVAR_INST_DEF> processXMLAction(DOMParser p, InputSource isrc, State state)
throws Exception {
try {
// showInputSource(isrc); System.exit(1); // TODO
p.parse(isrc);
Element e = p.getDocument().getDocumentElement();
if (SHOW_XML) {
System.out.println("Received action msg:");
printXMLNode(e);
}
if (!e.getNodeName().equals(ACTIONS)) {
System.out.println("ERROR: NO ACTIONS NODE");
System.exit(1);
return null;
}
NodeList nl = e.getElementsByTagName(ACTION);
// System.out.println(nl);
if (nl != null) { // && nl.getLength() > 0) { // TODO: Scott
ArrayList<PVAR_INST_DEF> ds = new ArrayList<PVAR_INST_DEF>();
for (int i = 0; i < nl.getLength(); i++) {
Element el = (Element) nl.item(i);
String name = getTextValue(el, ACTION_NAME).get(0);
ArrayList<String> args = getTextValue(el, ACTION_ARG);
ArrayList<LCONST> lcArgs = new ArrayList<LCONST>();
for (String arg : args) {
if (arg.startsWith("@")) lcArgs.add(new RDDL.ENUM_VAL(arg));
else lcArgs.add(new RDDL.OBJECT_VAL(arg));
}
String pvalue = getTextValue(el, ACTION_VALUE).get(0);
Object value = getValue(name, pvalue, state);
PVAR_INST_DEF d = new PVAR_INST_DEF(name, value, lcArgs);
ds.add(d);
}
return ds;
} else return new ArrayList<PVAR_INST_DEF>(); // FYI: May be unreachable. -Scott
// } else { // TODO: Removed by Scott, NOOP should not be handled differently
// nl = e.getElementsByTagName(NOOP);
// if ( nl != null && nl.getLength() > 0) {
// ArrayList<PVAR_INST_DEF> ds = new ArrayList<PVAR_INST_DEF>();
// return ds;
// }
// }
} catch (Exception e) {
// TODO Auto-generated catch block
System.out.println("FATAL SERVER ERROR:\n" + e);
// t.printStackTrace();
throw e;
// System.exit(1);
}
}
public void saveGlyphFile(OutputStream a_output) {
try {
Transformer transformer = getTransformer();
Document document = m_glyph.makeDocument();
DOMSource source = new DOMSource(document);
StreamResult result = new StreamResult(a_output);
transformer.transform(source, result);
} catch (ParserConfigurationException | TransformerException e) {
e.printStackTrace();
}
m_savedTime = System.currentTimeMillis();
m_modifiedTime = m_savedTime;
}
private boolean streamIsZeroLengthOrEmpty(InputStream is) throws IOException {
boolean isZeroLengthOrEmpty = (0 == is.available());
final int size = 1024;
byte[] b = new byte[size];
String s;
while (!isZeroLengthOrEmpty && -1 != is.read(b, 0, size)) {
s = (new String(b)).trim();
isZeroLengthOrEmpty = 0 == s.length();
b[0] = 0;
for (int i = 1; i < size; i += i) {
System.arraycopy(b, 0, b, i, ((size - i) < i) ? (size - i) : i);
}
}
return isZeroLengthOrEmpty;
}
/**
* EPML2PNML
*
* @param args String[]
*/
private static void EPML2PNML(String[] args) {
if (args.length != 2) {
System.out.println("���ṩEPML�ļ�·����PNML���Ŀ¼!");
System.exit(-1);
}
epmlImport epml = new epmlImport();
// load the single epml file
String filename = args[0];
try {
EPCResult epcRes = (EPCResult) epml.importFile(new FileInputStream(filename));
// convert all epc models to pnml files
ArrayList<ConfigurableEPC> alEPCs = epcRes.getAllEPCs();
PnmlExport export = new PnmlExport();
for (ConfigurableEPC epc : alEPCs) {
String id = epc.getIdentifier();
if (id.equals("1An_klol")
|| id.equals("1An_l1y8")
|| id.equals("1Ex_dzq9")
|| id.equals("1Ex_e6dx")
|| id.equals("1Ku_9soy")
|| id.equals("1Ku_a4cg")
|| id.equals("1Or_lojl")
|| id.equals("1Pr_d1ur")
|| id.equals("1Pr_djki")
|| id.equals("1Pr_dkfa")
|| id.equals("1Pr_dl73")
|| id.equals("1Ve_musj")
|| id.equals("1Ve_mvwz")) continue;
// save pnml files to the same folder
File outFile = new File(args[1] + "/" + id + ".pnml");
if (outFile.exists()) continue;
FileOutputStream fos = new FileOutputStream(outFile);
PetriNet petri = AMLtoPNML.convert(epc);
try {
export.export(new ProvidedObject("PetriNet", new Object[] {petri}), fos);
} catch (Exception ex1) {
ex1.printStackTrace(System.out);
}
}
} catch (IOException ex) {
ex.printStackTrace(System.out);
}
System.out.println("EPML Conversion Done");
}
// El string debe estar em formato json
public boolean updateRegistry(String dataJson) {
try {
// Crea objeto json con string por parametro
JSONObject json = new JSONObject(dataJson);
// Obtiene el array de Registos
JSONArray arr = json.getJSONArray("Registry");
// Recorre el array
for (int i = 0; i < arr.length(); i++) {
// Obtiene los datos idSensor y value
int idSensor = arr.getJSONObject(i).getInt("idSensor");
int value = arr.getJSONObject(i).getInt("value");
// Recorre la configuracion de registro
for (RegistryConf reg : registryConf) {
// Se fija si el registro corresponde a esta configuracion
if (reg.getIdSensor() == idSensor) {
// Checkea el criterio para guardar, o no en la BD
// Checkea tambien si el valor es igual al anterior
if (reg.getSaveTypeString() == "ONCHANGE" && lastRead.get(idSensor) != value) {
// Actualizo la ultima lectura y guardo en la BD
lastRead.put(idSensor, value);
saveRegistry(idSensor, value);
} else if (reg.getSaveTypeString() == "ONTIME") {
// Variables auxiliares, para checkear tiempo
Long auxLong = System.currentTimeMillis() / 1000;
int now = auxLong.intValue();
int timeToSave = lastRead.get(idSensor) + reg.getValue();
// Checkea si ya es tiempo para guerdar un nuevo registro
if (now >= timeToSave) {
// Actualizo el ultimo guardado
lastRead.put(idSensor, now);
saveRegistry(idSensor, value);
}
}
}
}
}
} catch (Exception e) {
e.printStackTrace();
}
return false;
}
/**
* Carica un file XML e ne restituisce un riferimento per DOM
*
* @param path - path to xml file
* @return reference to xml document
*/
private static Document loadDocument(String path) {
DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance();
dbf.setNamespaceAware(false);
try {
DocumentBuilder db = dbf.newDocumentBuilder();
Document d = db.parse(new File(path));
return d;
} catch (ParserConfigurationException ex) {
ex.printStackTrace();
System.exit(10);
} catch (SAXException sxe) {
sxe.printStackTrace();
} catch (IOException ioe) {
ioe.printStackTrace();
}
return null;
}
@Test
public void testgetAttributesWithNamedNodeMap() throws Exception {
// builderFactory = DocumentBuilderFactory.newInstance();
builderFactory.setNamespaceAware(true);
File f = new File(System.getProperty("user.dir"), "src/test/resources/sample-springbeans.xml");
DocumentBuilder builder = builderFactory.newDocumentBuilder();
Document doc = builder.parse(f);
Element root = doc.getDocumentElement();
// System.out.println("* current impl: " + doc.getClass().getName());
// id, class
Map<String, String> actualMap = new HashMap<String, String>();
NodeList list = root.getChildNodes();
for (int i = 0; i < list.getLength(); i++) {
Node node = list.item(i);
if (node instanceof Element) {
Element elem = (Element) node;
if (elem.getTagName().equals("beans:bean")) {
// System.out.println("bean[" + elem.getAttribute("id") + "]");
NamedNodeMap map = elem.getAttributes();
String valueId = null;
String valueClass = null;
for (int x = 0; x < map.getLength(); x++) {
Node attr = map.item(x);
if (attr.getNodeName().equals("id")) valueId = attr.getNodeValue();
if (attr.getNodeName().equals("class")) valueClass = attr.getNodeValue();
}
if (valueId != null && valueClass != null) actualMap.put(valueId, valueClass);
}
}
}
Map<String, String> expected = new HashMap<String, String>();
expected.put("authenticationManager", "org.springframework.security.providers.ProviderManager");
expected.put(
"daoAuthenticationProvider",
"org.springframework.security.providers.dao.DaoAuthenticationProvider");
expected.put(
"loggerListener", "org.springframework.security.event.authentication.LoggerListener");
Assert.assertEquals("Attributes with NamedNodeMap", expected, actualMap);
}
/** Initialize the GUI */
private void initGUI() {
counts theApp_new_counts = new counts();
String sysPath =
System.getProperty("user.home") + File.separator + "SRSCKT" + File.separator + "pkg";
File sysDir = new File(sysPath);
// if our system folder doesn't exist it creates it
if (!sysDir.exists()) sysDir.mkdirs();
String[] SysPkgs = sysDir.list();
for (String x : SysPkgs) {
System.out.println(x);
package_cls defaultPkgs =
new package_cls(
x, theApp_new_counts, 1); // sysCall is 1 as System Packages will be installed
}
connections theApp_new_connections = new connections();
this.setFrame(theApp_new_counts, theApp_new_connections);
this.setPath(null);
this.setSaved(false); // default false
}
/**
* TDTEngine - constructor for a new Tag Data Translation engine
*
* @param confdir the string value of the path to a configuration directory consisting of two
* subdirectories, <code>schemes</code> and <code>auxiliary</code>.
* <p>When the class TDTEngine is constructed, the path to a local directory must be
* specified, by passing it as a single string parameter to the constructor method (without
* any trailing slash or file separator). e.g. <code>
* <pre>TDTEngine engine = new TDTEngine("/opt/TDT");</pre></code>
* <p>The specified directory must contain two subdirectories named auxiliary and schemes. The
* Tag Data Translation definition files for the various coding schemes should be located
* inside the subdirectory called <code>schemes</code>. Any auxiliary lookup files (such as
* <code>ManagerTranslation.xml</code>) should be located inside the subdirectory called
* <code>auxiliary</code>.
* <p>Files within the schemes directory ending in <code>.xml</code> are read in and
* unmarshalled using <a href = "http://www.castor.org">Castor</a>.
*/
public TDTEngine(String confdir)
throws FileNotFoundException, MarshalException, ValidationException, TDTException {
xmldir = confdir;
long t = System.currentTimeMillis();
File[] dir =
new java.io.File(confdir + File.separator + "schemes").listFiles(new XMLFilenameFilter());
// java.util.Arrays.sort(dir); // Sort it
if (dir == null) throw new TDTException("Cannot find schemes in " + confdir);
Unmarshaller unmar = new Unmarshaller();
for (File f : dir) {
EpcTagDataTranslation tdt =
(EpcTagDataTranslation) unmar.unmarshal(EpcTagDataTranslation.class, new FileReader(f));
initFromTDT(tdt);
}
// need to populate the hashmap gs1cpi from the ManagerTranslation.xml table in auxiliary.
// Unmarshaller unmar = new Unmarshaller();
GEPC64Table cpilookup =
(GEPC64Table)
unmar.unmarshal(
GEPC64Table.class,
new FileReader(
confdir
+ File.separator
+ "auxiliary"
+ File.separator
+ "ManagerTranslation.xml"));
for (Enumeration e = cpilookup.enumerateEntry(); e.hasMoreElements(); ) {
Entry entry = (Entry) e.nextElement();
String comp = entry.getCompanyPrefix();
String indx = Integer.toString(entry.getIndex());
gs1cpi.put(indx, comp);
gs1cpi.put(comp, indx);
}
// System.out.println("Loaded schemas in " +
// (System.currentTimeMillis() - t)
// + " millisecs");
}
public static boolean saveTombstones(List<Tombstone> deathChests, String chestsPath) {
long timestamp = System.currentTimeMillis();
try {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
DocumentBuilder builder = factory.newDocumentBuilder();
// Create the writer
Document xmlDoc = builder.newDocument();
Element rootNode = xmlDoc.createElement("deathchestList");
// String pluginName = Settings.getPluginName();
String version = Settings.getVersion();
rootNode.setAttribute("version", version);
xmlDoc.appendChild(rootNode);
for (Tombstone tombstone : deathChests) {
rootNode.appendChild(
tombstone.createXmlNode(
xmlDoc.createElement(Utils.DEATHCHEST_XML_TAG), xmlDoc, timestamp));
}
// Put the XML file into domSource
DOMSource domSource = new DOMSource(xmlDoc);
// PrintStream will be responsible for writing
// the text data to the file
PrintStream ps = new PrintStream(chestsPath);
StreamResult fileWriter = new StreamResult(ps);
TransformerFactory transformerFactory = TransformerFactory.newInstance();
Transformer transformer = transformerFactory.newTransformer();
// Finally save the file
transformer.transform(domSource, fileWriter);
return true;
} catch (ParserConfigurationException | TransformerException | FileNotFoundException ex) {
System.err.println("Error while writing deathchest data:");
ex.printStackTrace();
}
return false;
}
@Override
public MathsEpsReturn getEps(MathsEpsParams params) {
long start = System.currentTimeMillis();
MathsEpsReturn result = new MathsEpsReturn();
result.setOk(false);
result.setEps(EMPTY);
result.setError("");
try {
// Parse XML
Document mathml = parseMathml(params, result, start);
if (mathml == null) {
return result;
}
return getEps(params, mathml, result, start);
} catch (Throwable t) {
result.setError("MathML unexpected error - " + t.getMessage());
t.printStackTrace();
return result;
}
}
public static List<Tombstone> loadTombstone(String chestsPath, DeathChests plugin) {
LinkedList<Tombstone> deathChests = new LinkedList<>();
try {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
DocumentBuilder builder = factory.newDocumentBuilder();
// Start the parser
Document doc = builder.parse(new File(chestsPath));
Element rootElement = doc.getDocumentElement();
String version = rootElement.getAttribute("version");
if (!Settings.getVersion().equals(version)) {
System.out.println(
"The version of the Deathchests-File changed. There are possible errors at loading them. (Probably not if your updated it)");
}
long timestamp = System.currentTimeMillis();
NodeList list = rootElement.getChildNodes();
int length = list.getLength();
for (int i = 0; i < length; i++) {
try {
Node node = list.item(i);
String name = node.getNodeName();
if (name.equalsIgnoreCase(Utils.DEATHCHEST_XML_TAG)) {
deathChests.add(new Tombstone((Element) node, timestamp, plugin));
}
} catch (XMLParseException ex) {
System.err.println("Corrupted deathchest! Skipping this one!");
ex.printStackTrace();
}
}
} catch (IOException | ParserConfigurationException | SAXException ex) {
System.err.println("Error while loading deathchest data:");
ex.printStackTrace();
}
return deathChests;
}
public Test(String arg) {
if (arg.equals("all")) {
boolean all = false;
all = performTest("delete");
all = performTest("extract") && all;
all = performTest("clone") && all;
all = performTest("insert") && all;
all = performTest("surround") && all;
all = performTest("insert2") && all;
all = performTest("delete2") && all;
if (all) {
System.out.println("Done.");
} else {
System.out.println("*** ONE OR MORE TESTS FAILED! ***");
System.exit(1);
}
} else {
performTest(arg);
}
}
// ## operation Chemkin(double,double,String)
public Chemkin(double p_rtol, double p_atol, String p_reactorType) {
// #[ operation Chemkin(double,double,String)
if (p_rtol < 0 || p_atol < 0)
throw new InvalidChemkinParameterException("Negative rtol or atol!");
if (p_reactorType == null) throw new NullPointerException();
String dir = System.getProperty("RMG.workingDirectory");
// create the documentTypesDefinitions
File docFile = new File("chemkin/documentTypeDefinitions");
docFile.mkdir();
copyFiles(
dir + "/software/reactorModel/documentTypeDefinitions/reactorInput.dtd",
"chemkin/documentTypeDefinitions/reactorInput.dtd");
copyFiles(
dir + "/software/reactorModel/documentTypeDefinitions/reactorOutput.dtd",
"chemkin/documentTypeDefinitions/reactorOutput.dtd");
rtol = p_rtol;
atol = p_atol;
reactorType = p_reactorType;
}
private static void AML2PNML(String[] args) {
if (args.length != 3) {
System.out.println("���ṩAML����Ŀ¼��PNML���Ŀ¼�Լ��ֵ��ļ�!");
System.exit(-1);
}
System.out.println("����Ŀ¼��" + args[0]);
System.out.println("���Ŀ¼��" + args[1]);
System.out.println("�ֵ��ļ���" + args[2]);
// load the dict
AMLtoPNML.loadDict(args[2]);
File srcDir = new File(args[0]);
File[] lstAML = srcDir.listFiles();
PnmlExport export = new PnmlExport();
for (int i = 0; i < lstAML.length; i++) {
if (lstAML[i].isDirectory()) {
continue;
}
System.out.print(lstAML[i].getName() + "==>");
try {
FileInputStream fis = new FileInputStream(lstAML[i]);
int idx = lstAML[i].getName().indexOf(".xml");
File outFile = new File(args[1] + "/" + lstAML[i].getName().substring(0, idx) + ".pnml");
FileOutputStream fos = new FileOutputStream(outFile);
EPCResult epcRes = (EPCResult) AMLtoPNML.importFile(fis);
ConfigurableEPC epc = epcRes.getMainEPC();
PetriNet petri = AMLtoPNML.convert(epc);
export.export(new ProvidedObject("PetriNet", new Object[] {petri}), fos);
System.out.println(outFile.getName());
} catch (FileNotFoundException ex) {
ex.printStackTrace(System.out);
} catch (IOException ioe) {
ioe.printStackTrace(System.out);
} catch (Exception e) {
e.printStackTrace(System.out);
}
}
System.out.println("Conversion Done");
}