private void refreshPathwayListForCurrentNetwork() {
Set<String> selectedPathwaySet = new HashSet<String>();
for (int i : currentTable.getSelectedRows())
selectedPathwaySet.add(currentTable.getValueAt(i, 0).toString());
currentModel.setRowCount(0);
SortedSet<String> pathwaySet;
CyNetwork network = Cytoscape.getCurrentNetwork();
NetworkData networkData =
MetScapePlugin.getPluginData().getNetworkData(Networks.getUUID(network));
NetworkType networkType = null;
if (networkData != null) networkType = networkData.getNetworkType();
if (networkType == NetworkType.COMPOUND_REACTION
|| networkType == NetworkType.CREG) { // for C-R and C-R-E-G
pathwaySet = getPathwaySetFromReactionNodes(network);
} else if (networkType == NetworkType.COMPOUND) {
pathwaySet = getPathwaySetFromReactionEdges(network);
} else if (networkType == NetworkType.COMPOUND_GENE) {
pathwaySet = getPathwaySetFromEnzymeReactionEdges(network);
} else {
pathwaySet = new TreeSet<String>();
}
for (String pathway : pathwaySet) {
currentModel.addRow(new Object[] {pathway});
if (selectedPathwaySet.contains(pathway))
currentTable.addRowSelectionInterval(
currentTable.getRowCount() - 1, currentTable.getRowCount() - 1);
}
applySelectionToNetwork();
}
