/*
* if questionnaire is associated with Amendment/renewal submodulecode.
* if this protocol is normal protocol, then it has to check whether the A/R of this
* questionnaire has merged to this protocol yet.
*/
private boolean isCurrentAorRQn(AnswerHeader answerHeader) {
boolean isCurrentQn = false;
if (getProtocol().isAmendment() || getProtocol().isRenewal()) {
// if this is A/R, then just match sequencenumber and modulesubitemkey
isCurrentQn =
answerHeader.getModuleSubItemKey().equals(getProtocol().getSequenceNumber().toString());
} else {
// if this is a regular protocol, then get this A/R associated this this Qn and see if
// A/R has been merged to this version of protocol
Map keyValues = new HashMap();
keyValues.put("protocolNumber", answerHeader.getModuleItemKey());
ProtocolBase protocol =
((List<ProtocolBase>)
getBusinessObjectService()
.findMatchingOrderBy(
getProtocolBOClassHook(), keyValues, "sequenceNumber", false))
.get(0);
isCurrentQn =
answerHeader.getModuleSubItemKey().equals(protocol.getSequenceNumber().toString())
&& !CollectionUtils.isEmpty(protocol.getProtocolSubmissions())
&& isMergedToProtocol(getProtocol(), protocol);
}
return isCurrentQn;
}
protected void buildAndAttachProtocolCorrespondence(
ProtocolBase protocol, byte[] data, String correspTypeCode) {
ProtocolCorrespondence protocolCorrespondence = getNewProtocolCorrespondenceHook();
protocolCorrespondence.setProtocol(protocol);
protocolCorrespondence.setProtocolId(protocol.getProtocolId());
protocolCorrespondence.setProtocolNumber(protocol.getProtocolNumber());
protocolCorrespondence.setSequenceNumber(protocol.getSequenceNumber());
protocolCorrespondence.setProtoCorrespTypeCode(correspTypeCode);
ProtocolActionBase lastAction = protocol.getLastProtocolAction();
protocolCorrespondence.setProtocolAction(lastAction);
protocolCorrespondence.setActionIdFk(lastAction.getProtocolActionId());
protocolCorrespondence.setCorrespondence(data);
protocolCorrespondence.setActionId(lastAction.getActionId());
// What is Final flag used for? ANSWER: the final flag is used by the IRB admin to denote
// correspondences
// that are ready to be sent/published to the PI etc.
protocolCorrespondence.setFinalFlag(false);
protocolCorrespondence.setCreateUser(GlobalVariables.getUserSession().getPrincipalName());
protocolCorrespondence.setCreateTimestamp(dateTimeService.getCurrentTimestamp());
if (lastAction.getProtocolCorrespondences() == null) {
List<ProtocolCorrespondence> correspondences = new ArrayList<ProtocolCorrespondence>();
correspondences.add(protocolCorrespondence);
lastAction.setProtocolCorrespondences(correspondences);
protocol.refreshReferenceObject("protocolSubmissions");
} else {
lastAction.getProtocolCorrespondences().add(protocolCorrespondence);
}
getBusinessObjectService().save(protocolCorrespondence);
getBusinessObjectService().save(protocol);
}
/*
* This is Questionnaire answer is with submodulecode of "0".
* Then if this protocol is A/R, then it has to check whether this is the first version
* A/R merged into.
*/
private boolean isCurrentRegularQn(AnswerHeader answerHeader) {
boolean isCurrentQn = false;
if ((getProtocol().isAmendment() || getProtocol().isRenewal())
&& !answerHeader.getModuleItemKey().equals(getProtocol().getProtocolNumber())) {
Map keyValues = new HashMap();
keyValues.put("protocolNumber", answerHeader.getModuleItemKey());
ProtocolBase prevProtocol = null;
// if this is an A/R protocol, then need to find the original protocol that the A/R first
// merged into.
for (ProtocolBase protocol :
((List<ProtocolBase>)
getBusinessObjectService()
.findMatchingOrderBy(
getProtocolBOClassHook(), keyValues, "sequenceNumber", true))) {
isCurrentQn =
answerHeader.getModuleSubItemKey().equals(protocol.getSequenceNumber().toString())
&& !CollectionUtils.isEmpty(getProtocol().getProtocolSubmissions())
&& isMergedToProtocol(protocol, getProtocol());
if (isCurrentQn) {
if (prevProtocol == null || !isMergedToProtocol(prevProtocol, getProtocol())) {
// this is the protocol this A/R merged into. so, use this questionnaire.
break;
} else {
// prevProtocol is the initial ProtocolBase that this A/R merged into.
isCurrentQn = false;
}
}
prevProtocol = protocol;
}
} else {
// if this is a regular protocol, then check if sequencenumber & modulesubitemkey match
isCurrentQn =
answerHeader.getModuleSubItemKey().equals(getProtocol().getSequenceNumber().toString());
}
return isCurrentQn;
}