private void jButton2ActionPerformed(
java.awt.event.ActionEvent evt) { // GEN-FIRST:event_jButton2ActionPerformed
double newMinLifetime, newMaxLifetime;
try {
newMinLifetime = Double.parseDouble(jTFMinValue.getText());
newMaxLifetime = Double.parseDouble(jTFMaxValue.getText());
IntensImageDataset dataValuesDataset =
new IntensImageDataset(imHeight, imWidth, new double[imWidth * imHeight]);
for (int i = 0; i < dataValues.length; i++) {
dataValuesDataset.SetValue(selImInd[i], dataValues[i]);
}
PaintScale ps = new RainbowPaintScale(newMinLifetime, newMaxLifetime);
JFreeChart aveLifetimeChart =
createScatChart(
ImageUtilities.createColorCodedImage(dataValuesDataset, ps), ps, imWidth, imHeight);
aveLifetimeChart.getXYPlot().getRangeAxis().setInverted(true);
ChartPanel aveLifetimePanel = new ChartPanel(aveLifetimeChart);
aveLifetimePanel.setFillZoomRectangle(true);
aveLifetimePanel.setMouseWheelEnabled(true);
jPImage.removeAll();
aveLifetimePanel.setSize(jPImage.getSize());
aveLifetimePanel.addChartMouseListener(listener);
jPImage.add(aveLifetimePanel);
jPImage.repaint();
} catch (NumberFormatException ex) {
CoreErrorMessages.selCorrChNum();
}
} // GEN-LAST:event_jButton2ActionPerformed
public MouseListenerDemo1(String s) {
super(s);
DefaultPieDataset defaultpiedataset = new DefaultPieDataset();
defaultpiedataset.setValue("Java", new Double(43.200000000000003D));
defaultpiedataset.setValue("Visual Basic", new Double(0.0D));
defaultpiedataset.setValue("C/C++", new Double(17.5D));
org.jfree.chart.JFreeChart jfreechart =
ChartFactory.createPieChart("Pie Chart Demo 1", defaultpiedataset, true, true, false);
ChartPanel chartpanel = new ChartPanel(jfreechart, false, false, false, false, false);
chartpanel.addChartMouseListener(this);
chartpanel.setPreferredSize(new Dimension(500, 270));
setContentPane(chartpanel);
}
public static JPanel createDemoPanel() {
JFreeChart jfreechart = createChart();
ChartPanel chartpanel = new ChartPanel(jfreechart);
chartpanel.addChartMouseListener(
new ChartMouseListener() {
public void chartMouseClicked(ChartMouseEvent chartmouseevent) {
System.out.println(chartmouseevent.getEntity());
}
public void chartMouseMoved(ChartMouseEvent chartmouseevent) {}
});
return chartpanel;
}
/**
* Creates a new demo.
*
* @param title the frame title.
*/
public MouseListenerDemo2(String title) {
super(title);
DefaultCategoryDataset dataset = new DefaultCategoryDataset();
dataset.addValue(1.0, "S1", "C1");
dataset.addValue(4.0, "S1", "C2");
dataset.addValue(3.0, "S1", "C3");
dataset.addValue(5.0, "S1", "C4");
dataset.addValue(5.0, "S1", "C5");
dataset.addValue(6.0, "S1", "C6");
dataset.addValue(7.0, "S1", "C7");
dataset.addValue(8.0, "S1", "C8");
dataset.addValue(5.0, "S2", "C1");
dataset.addValue(7.0, "S2", "C2");
dataset.addValue(6.0, "S2", "C3");
dataset.addValue(8.0, "S2", "C4");
dataset.addValue(4.0, "S2", "C5");
dataset.addValue(4.0, "S2", "C6");
dataset.addValue(3.0, "S2", "C7");
dataset.addValue(1.0, "S2", "C8");
dataset.addValue(4.0, "S3", "C1");
dataset.addValue(3.0, "S3", "C2");
dataset.addValue(2.0, "S3", "C3");
dataset.addValue(3.0, "S3", "C4");
dataset.addValue(6.0, "S3", "C5");
dataset.addValue(3.0, "S3", "C6");
dataset.addValue(4.0, "S3", "C7");
dataset.addValue(3.0, "S3", "C8");
JFreeChart chart =
ChartFactory.createBarChart(
"MouseListenerDemo2",
"Category",
"Value",
dataset,
PlotOrientation.VERTICAL,
true,
true,
false);
// add the chart to a panel...
ChartPanel chartPanel = new ChartPanel(chart);
chartPanel.addChartMouseListener(this);
chartPanel.setPreferredSize(new java.awt.Dimension(500, 270));
setContentPane(chartPanel);
}
public ImageHistPanel(
String name,
double[] data,
int[] selInd,
int height,
int width,
double minVal,
double maxVal,
ChartMouseListener listen) {
initComponents();
this.dataValues = data;
this.selImInd = selInd;
this.imHeight = height;
this.imWidth = width;
this.minValue = minVal;
this.maxValue = maxVal;
this.jLName.setText(name);
this.numChHist = 20;
this.listener = listen;
jTFChNumHist.setText(String.valueOf(numChHist));
jTFMaxValue.setText(String.valueOf(maxValue));
jTFMinValue.setText(String.valueOf(minValue));
jPHist.add(updateHistPanel(data, minValue, maxValue, numChHist));
IntensImageDataset dataValuesDataset =
new IntensImageDataset(imHeight, imWidth, new double[imWidth * imHeight]);
for (int i = 0; i < dataValues.length; i++) {
dataValuesDataset.SetValue(selImInd[i], dataValues[i]);
}
PaintScale ps = new RainbowPaintScale(0.001, maxValue);
JFreeChart aveLifetimeChart =
createScatChart(
ImageUtilities.createColorCodedImage(dataValuesDataset, ps), ps, imWidth, imHeight);
ChartPanel aveLifetimePanel = new ChartPanel(aveLifetimeChart);
aveLifetimePanel.setFillZoomRectangle(true);
aveLifetimePanel.setMouseWheelEnabled(true);
aveLifetimePanel.addChartMouseListener(listener);
jPImage.add(aveLifetimePanel);
}
public ChartBoundingPanel(final ChartPanel chartPanel) {
super(new BorderLayout());
this.chartPanel = chartPanel;
add(chartPanel, BorderLayout.CENTER);
chartPanel.addChartMouseListener(this);
chartPanel.addMouseListener(
new MouseAdapter() {
@Override
public void mousePressed(MouseEvent e) {
if (currEntityIndex != null) {
currEntities[currEntityIndex] = currEntity;
currEntityIndex = null;
} else {
if (currEntity != null) {
for (int i = 0; i < currEntities.length; i++) {
System.out.println(i + " " + currEntities[i].hashCode());
}
Number val2 =
currEntity
.getDataset()
.getValue(currEntity.getRowKey(), currEntity.getColumnKey());
for (int i = 0; i < currEntities.length; i++) {
Number val1 =
currEntities[i]
.getDataset()
.getValue(currEntities[i].getRowKey(), currEntities[i].getColumnKey());
if (val1.doubleValue() == val2.doubleValue()) {
currEntityIndex = i;
break;
}
}
}
}
}
});
}
/**
* @param name Chart name
* @param parent Skeleton parent
* @param axes Configuration of axes
* @param abcissaName Abcissa name
*/
public SwingChart(String name, final Skeleton parent, List<AxisChart> axes, String abcissaName) {
this.skeleton = parent;
this.axes = axes;
this.name = name;
this.abcissaFormat = NumberFormat.getInstance(Locale.getDefault());
this.ordinateFormat = NumberFormat.getInstance(Locale.getDefault());
plot = new XYPlot();
plot.setBackgroundPaint(scene2awtColor(javafx.scene.paint.Color.web(strChartBackgroundColor)));
plot.setDomainGridlinePaint(scene2awtColor(javafx.scene.paint.Color.web(strGridlineColor)));
plot.setRangeGridlinePaint(scene2awtColor(javafx.scene.paint.Color.web(strGridlineColor)));
plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
abcissaAxis = new NumberAxis(abcissaName);
((NumberAxis) abcissaAxis).setAutoRangeIncludesZero(false);
abcissaAxis.setTickLabelFont(new Font("SansSerif", Font.PLAIN, 12));
abcissaAxis.setLabelFont(new Font("SansSerif", Font.PLAIN, 12));
abcissaAxis.setLabelPaint(scene2awtColor(javafx.scene.paint.Color.web(strTickColor)));
abcissaAxis.setTickLabelPaint(scene2awtColor(javafx.scene.paint.Color.web(strTickColor)));
abcissaAxis.setAutoRange(true);
abcissaAxis.setLowerMargin(0.0);
abcissaAxis.setUpperMargin(0.0);
abcissaAxis.setTickLabelsVisible(true);
abcissaAxis.setLabelFont(abcissaAxis.getLabelFont().deriveFont(fontSize));
abcissaAxis.setTickLabelFont(abcissaAxis.getLabelFont().deriveFont(fontSize));
plot.setDomainAxis(abcissaAxis);
for (int i = 0; i < axes.size(); i++) {
AxisChart categoria = axes.get(i);
addAxis(categoria.getName());
for (int j = 0; j < categoria.configSerieList.size(); j++) {
SimpleSeriesConfiguration cs = categoria.configSerieList.get(j);
addSeries(categoria.getName(), cs);
}
}
chart = new JFreeChart("", new Font("SansSerif", Font.BOLD, 16), plot, false);
chart.setBackgroundPaint(scene2awtColor(javafx.scene.paint.Color.web(strBackgroundColor)));
chartPanel = new ChartPanel(chart);
chartPanel.setBorder(
BorderFactory.createCompoundBorder(
BorderFactory.createEmptyBorder(4, 4, 4, 4),
BorderFactory.createLineBorder(
scene2awtColor(javafx.scene.paint.Color.web(strBackgroundColor)))));
chartPanel.getInputMap().put(KeyStroke.getKeyStroke("ESCAPE"), "escape");
chartPanel
.getActionMap()
.put(
"escape",
new AbstractAction() {
@Override
public void actionPerformed(java.awt.event.ActionEvent e) {
for (int i = 0; i < plot.getDatasetCount(); i++) {
XYDataset test = plot.getDataset(i);
XYItemRenderer r = plot.getRenderer(i);
r.removeAnnotations();
}
}
});
chartPanel.addChartMouseListener(
cml =
new ChartMouseListener() {
@Override
public void chartMouseClicked(ChartMouseEvent event) {}
@Override
public void chartMouseMoved(ChartMouseEvent event) {
try {
XYItemEntity xyitem = (XYItemEntity) event.getEntity(); // get clicked entity
XYDataset dataset = (XYDataset) xyitem.getDataset(); // get data set
double x = dataset.getXValue(xyitem.getSeriesIndex(), xyitem.getItem());
double y = dataset.getYValue(xyitem.getSeriesIndex(), xyitem.getItem());
final XYPlot plot = chart.getXYPlot();
for (int i = 0; i < plot.getDatasetCount(); i++) {
XYDataset test = plot.getDataset(i);
XYItemRenderer r = plot.getRenderer(i);
r.removeAnnotations();
if (test == dataset) {
NumberAxis ejeOrdenada = AxesList.get(i);
double y_max = ejeOrdenada.getUpperBound();
double y_min = ejeOrdenada.getLowerBound();
double x_max = abcissaAxis.getUpperBound();
double x_min = abcissaAxis.getLowerBound();
double angulo;
if (y > (y_max + y_min) / 2 && x > (x_max + x_min) / 2) {
angulo = 3.0 * Math.PI / 4.0;
} else if (y > (y_max + y_min) / 2 && x < (x_max + x_min) / 2) {
angulo = 1.0 * Math.PI / 4.0;
} else if (y < (y_max + y_min) / 2 && x < (x_max + x_min) / 2) {
angulo = 7.0 * Math.PI / 4.0;
} else {
angulo = 5.0 * Math.PI / 4.0;
}
CircleDrawer cd =
new CircleDrawer(
(Color) r.getSeriesPaint(xyitem.getSeriesIndex()),
new BasicStroke(2.0f),
null);
// XYAnnotation bestBid = new
// XYDrawableAnnotation(dataset.getXValue(xyitem.getSeriesIndex(),
// xyitem.getItem()), dataset.getYValue(xyitem.getSeriesIndex(),
// xyitem.getItem()), 11, 11, cd);
String txt =
"X:" + abcissaFormat.format(x) + ", Y:" + ordinateFormat.format(y);
XYPointerAnnotation anotacion =
new XYPointerAnnotation(
txt,
dataset.getXValue(xyitem.getSeriesIndex(), xyitem.getItem()),
dataset.getYValue(xyitem.getSeriesIndex(), xyitem.getItem()),
angulo);
anotacion.setTipRadius(10.0);
anotacion.setBaseRadius(35.0);
anotacion.setFont(new Font("SansSerif", Font.PLAIN, 10));
if (Long.parseLong((strChartBackgroundColor.replace("#", "")), 16)
> 0xffffff / 2) {
anotacion.setPaint(Color.black);
anotacion.setArrowPaint(Color.black);
} else {
anotacion.setPaint(Color.white);
anotacion.setArrowPaint(Color.white);
}
// bestBid.setPaint((Color) r.getSeriesPaint(xyitem.getSeriesIndex()));
r.addAnnotation(anotacion);
}
}
// LabelValorVariable.setSize(LabelValorVariable.getPreferredSize());
} catch (NullPointerException | ClassCastException ex) {
}
}
});
chartPanel.setPopupMenu(null);
chartPanel.setBackground(scene2awtColor(javafx.scene.paint.Color.web(strBackgroundColor)));
SwingNode sn = new SwingNode();
sn.setContent(chartPanel);
chartFrame = new VBox();
chartFrame.getChildren().addAll(sn, legendFrame);
VBox.setVgrow(sn, Priority.ALWAYS);
VBox.setVgrow(legendFrame, Priority.NEVER);
chartFrame
.getStylesheets()
.addAll(SwingChart.class.getResource("overlay-chart.css").toExternalForm());
legendFrame.setStyle("marco: " + strBackgroundColor + ";-fx-background-color: marco;");
MenuItem mi;
mi = new MenuItem("Print");
mi.setOnAction(
(ActionEvent t) -> {
print(chartFrame);
});
contextMenuList.add(mi);
sn.setOnMouseClicked(
(MouseEvent t) -> {
if (menu != null) {
menu.hide();
}
if (t.getClickCount() == 2) {
backgroundEdition();
}
});
mi = new MenuItem("Copy to clipboard");
mi.setOnAction(
(ActionEvent t) -> {
copyClipboard(chartFrame);
});
contextMenuList.add(mi);
mi = new MenuItem("Export values");
mi.setOnAction(
(ActionEvent t) -> {
FileChooser fileChooser = new FileChooser();
fileChooser.setTitle("Export to file");
fileChooser
.getExtensionFilters()
.addAll(new FileChooser.ExtensionFilter("Comma Separated Values", "*.csv"));
Window w = null;
try {
w = parent.getScene().getWindow();
} catch (NullPointerException e) {
}
File file = fileChooser.showSaveDialog(w);
if (file != null) {
export(file);
}
});
contextMenuList.add(mi);
chartFrame.setOnContextMenuRequested(
(ContextMenuEvent t) -> {
if (menu != null) {
menu.hide();
}
menu = new ContextMenu();
menu.getItems().addAll(contextMenuList);
menu.show(chartFrame, t.getScreenX(), t.getScreenY());
});
}
/**
* Returns a sequence plot as a ChartPanel.
*
* @param aProteinSequencePanelParent the protein sequence panel parent
* @param sparklineDataset the dataset
* @param proteinAnnotations the protein annotations
* @param addReferenceLine if true, a reference line is added
* @param allowZooming if true, the user can zoom in the created plot/chart
* @return a sequence plot
*/
public ChartPanel getSequencePlot(
ProteinSequencePanelParent aProteinSequencePanelParent,
JSparklinesDataset sparklineDataset,
HashMap<Integer, ArrayList<ResidueAnnotation>> proteinAnnotations,
boolean addReferenceLine,
boolean allowZooming) {
this.proteinSequencePanelParent = aProteinSequencePanelParent;
DefaultCategoryDataset barChartDataset = new DefaultCategoryDataset();
StackedBarRenderer renderer = new StackedBarRenderer();
renderer.setShadowVisible(false);
CategoryToolTipGenerator myTooltips = new ProteinAnnotations(proteinAnnotations);
// add the data
for (int i = 0; i < sparklineDataset.getData().size(); i++) {
JSparklinesDataSeries sparklineDataSeries = sparklineDataset.getData().get(i);
for (int j = 0; j < sparklineDataSeries.getData().size(); j++) {
barChartDataset.addValue(sparklineDataSeries.getData().get(j), "" + i, "" + j);
renderer.setSeriesPaint(i, sparklineDataSeries.getSeriesColor());
renderer.setSeriesToolTipGenerator(i, myTooltips);
}
}
// create the chart
JFreeChart chart =
ChartFactory.createStackedBarChart(
null, null, null, barChartDataset, PlotOrientation.HORIZONTAL, false, false, false);
// fine tune the chart properites
CategoryPlot plot = chart.getCategoryPlot();
// remove space before/after the domain axis
plot.getDomainAxis().setUpperMargin(0);
plot.getDomainAxis().setLowerMargin(0);
// remove space before/after the range axis
plot.getRangeAxis().setUpperMargin(0);
plot.getRangeAxis().setLowerMargin(0);
renderer.setRenderAsPercentages(true);
renderer.setBaseToolTipGenerator(new IntervalCategoryToolTipGenerator());
// add the dataset to the plot
plot.setDataset(barChartDataset);
// hide unwanted chart details
plot.getRangeAxis().setVisible(false);
plot.getDomainAxis().setVisible(false);
plot.setRangeGridlinesVisible(false);
plot.setDomainGridlinesVisible(false);
// add a reference line in the middle of the dataset
if (addReferenceLine) {
DefaultCategoryDataset referenceLineDataset = new DefaultCategoryDataset();
referenceLineDataset.addValue(1.0, "A", "B");
plot.setDataset(1, referenceLineDataset);
LayeredBarRenderer referenceLineRenderer = new LayeredBarRenderer();
referenceLineRenderer.setSeriesBarWidth(0, referenceLineWidth);
referenceLineRenderer.setSeriesFillPaint(0, referenceLineColor);
referenceLineRenderer.setSeriesPaint(0, referenceLineColor);
plot.setRenderer(1, referenceLineRenderer);
}
// set up the chart renderer
plot.setRenderer(0, renderer);
// hide the outline
chart.getPlot().setOutlineVisible(false);
// make sure the background is the same as the panel
chart.getPlot().setBackgroundPaint(backgroundColor);
chart.setBackgroundPaint(backgroundColor);
final HashMap<Integer, ArrayList<ResidueAnnotation>> blockTooltips = proteinAnnotations;
// create the chart panel
ChartPanel chartPanel = new ChartPanel(chart);
chartPanel.addChartMouseListener(
new ChartMouseListener() {
@Override
public void chartMouseClicked(ChartMouseEvent cme) {
if (cme.getEntity() != null && cme.getTrigger().getButton() == MouseEvent.BUTTON1) {
((CategoryItemEntity) cme.getEntity()).getDataset();
Integer blockNumber =
new Integer((String) ((CategoryItemEntity) cme.getEntity()).getRowKey());
ArrayList<ResidueAnnotation> annotation = blockTooltips.get(blockNumber);
if (annotation != null) {
proteinSequencePanelParent.annotationClicked(annotation, cme);
}
}
}
@Override
public void chartMouseMoved(ChartMouseEvent cme) {
cme.getTrigger()
.getComponent()
.setCursor(new java.awt.Cursor(java.awt.Cursor.DEFAULT_CURSOR));
if (cme.getEntity() != null && cme.getEntity() instanceof CategoryItemEntity) {
((CategoryItemEntity) cme.getEntity()).getDataset();
Integer blockNumber =
new Integer((String) ((CategoryItemEntity) cme.getEntity()).getRowKey());
ArrayList<ResidueAnnotation> annotation = blockTooltips.get(blockNumber);
if (annotation != null && !annotation.isEmpty()) {
if (blockTooltips.get(blockNumber).get(0).isClickable()) {
cme.getTrigger()
.getComponent()
.setCursor(new java.awt.Cursor(java.awt.Cursor.HAND_CURSOR));
}
}
}
}
});
if (!allowZooming) {
chartPanel.setPopupMenu(null);
chartPanel.setRangeZoomable(false);
}
chartPanel.setBackground(Color.WHITE);
return chartPanel;
}
private ChartPanel createChartPanel(JFreeChart chart) {
profilePlotDisplay = new ChartPanel(chart);
MaskSelectionToolSupport maskSelectionToolSupport =
new MaskSelectionToolSupport(
this,
profilePlotDisplay,
"profile_plot_area",
"Mask generated from selected profile plot area",
Color.RED,
PlotAreaSelectionTool.AreaType.Y_RANGE) {
@Override
protected String createMaskExpression(
PlotAreaSelectionTool.AreaType areaType, Shape shape) {
Rectangle2D bounds = shape.getBounds2D();
return createMaskExpression(bounds.getMinY(), bounds.getMaxY());
}
protected String createMaskExpression(double x1, double x2) {
String bandName = BandArithmetic.createExternalName(getRaster().getName());
return String.format("%s >= %s && %s <= %s", bandName, x1, bandName, x2);
}
};
profilePlotDisplay.addChartMouseListener(
new XYPlotMarker(
profilePlotDisplay,
new XYPlotMarker.Listener() {
@Override
public void pointSelected(XYDataset xyDataset, int seriesIndex, Point2D dataPoint) {
if (profileData != null) {
GeoPos[] geoPositions = profileData.getGeoPositions();
int index = (int) dataPoint.getX();
if (index >= 0 && index < geoPositions.length) {
if (cursorSynchronizer == null) {
cursorSynchronizer = new CursorSynchronizer(VisatApp.getApp());
}
if (!cursorSynchronizer.isEnabled()) {
cursorSynchronizer.setEnabled(true);
}
cursorSynchronizer.updateCursorOverlays(geoPositions[index]);
}
}
}
@Override
public void pointDeselected() {
cursorSynchronizer.setEnabled(false);
}
}));
profilePlotDisplay.setInitialDelay(200);
profilePlotDisplay.setDismissDelay(1500);
profilePlotDisplay.setReshowDelay(200);
profilePlotDisplay.setZoomTriggerDistance(5);
profilePlotDisplay.getPopupMenu().addSeparator();
profilePlotDisplay
.getPopupMenu()
.add(maskSelectionToolSupport.createMaskSelectionModeMenuItem());
profilePlotDisplay.getPopupMenu().add(maskSelectionToolSupport.createDeleteMaskMenuItem());
profilePlotDisplay.getPopupMenu().addSeparator();
profilePlotDisplay.getPopupMenu().add(createCopyDataToClipboardMenuItem());
return profilePlotDisplay;
}