public void parseCode() {
// Parse all <code> and <parameter> elements
List codeList = ParseUtils.parseDescendants(root, "code", idMap);
Iterator i = codeList.iterator();
while (i.hasNext()) {
Element codeElt = (Element) i.next();
String codeId = codeElt.getAttributeValue("id");
if (objects.containsKey(codeId)) {
System.out.println("Note: Shadowing definition of <code id=\"" + codeId + "\">");
}
objects.put(codeId, new Code(codeElt, idMap));
}
}
public static HMM parseHMM(Element hmmelt, TreeMap idMap, TreeMap objects) {
HMM hmm = new HMM(hmmelt, idMap, objects);
hmm.analyze(objects);
objects.put(hmmelt.getAttributeValue("id"), hmm);
return hmm;
}