public static ConceptChronicle getConcept(int cNid) throws IOException {
assert cNid == Bdb.getConceptNid(cNid)
: " Not a concept nid: "
+ cNid
+ " Bdb cNid:"
+ Bdb.getConceptNid(cNid)
+ " max nid: "
+ Bdb.getUuidsToNidMap().getCurrentMaxNid()
+ " ("
+ (Bdb.getUuidsToNidMap().getCurrentMaxNid() - cNid)
+ ")";
return conceptDb.getConcept(cNid);
}
@Override
public void run() {
try {
activity.setIndeterminate(false);
activity.setValue(0);
activity.setMaximum(9);
setProperty(G_VERSION, Long.toString(gVersion.incrementAndGet()));
activity.setProgressInfoLower("Writing uuidDb... ");
activity.setValue(1);
activity.setProgressInfoLower("Writing uuidsToNidMapDb... ");
uuidsToNidMapDb.sync();
activity.setValue(2);
nidCidMapDb.sync();
activity.setValue(3);
activity.setProgressInfoLower("Writing statusAtPositionDb... ");
stampDb.sync();
activity.setValue(4);
activity.setProgressInfoLower("Writing conceptDb... ");
conceptDb.sync();
activity.setValue(5);
activity.setValue(6);
activity.setProgressInfoLower("Writing propDb... ");
propDb.sync();
activity.setProgressInfoLower("Writing mutable environment... ");
activity.setValue(7);
mutable.bdbEnv.sync();
activity.setProgressInfoLower("Writing readonly environment... ");
activity.setValue(8);
if (readOnly.bdbEnv.getConfig().getReadOnly() == false) {
readOnly.bdbEnv.sync();
}
activity.setValue(9);
long endTime = System.currentTimeMillis();
long elapsed = endTime - startTime;
String elapsedStr = TimeHelper.getElapsedTimeString(elapsed);
activity.setProgressInfoUpper("Database sync complete.");
activity.setProgressInfoLower("Elapsed: " + elapsedStr);
activity.complete();
} catch (DatabaseException | IOException e) {
AceLog.getAppLog().alertAndLogException(e);
} catch (ComputationCanceled e) {
// Nothing to do
}
}
// Close the environment
public static void close() throws InterruptedException, ExecutionException {
if (closed == false && mutable != null && mutable.bdbEnv != null) {
closed = true;
try {
I_ShowActivity activity = new ConsoleActivityViewer();
activity.setStopButtonVisible(false);
activity.setProgressInfoLower("1-a/11: Stopping Isa Cache generation.");
FileOutputStream fos = new FileOutputStream(viewCoordinateMapFile);
try (ObjectOutputStream oos = new ObjectOutputStream(fos)) {
oos.writeObject(viewCoordinates);
}
activity.setProgressInfoLower("2/11: Starting sync using service.");
assert conceptDb != null : "conceptDb is null...";
new Sync().run();
activity.setProgressInfoLower("3/11: Shutting down sync service.");
syncService.shutdown();
activity.setProgressInfoLower("4/11: Awaiting termination of sync service.");
syncService.awaitTermination(90, TimeUnit.MINUTES);
activity.setProgressInfoLower("5/11: Starting PositionMapper close.");
activity.setProgressInfoLower("6/11: Canceling uncommitted changes.");
BdbCommitManager.cancel();
activity.setProgressInfoLower("7/11: Starting BdbCommitManager shutdown.");
BdbCommitManager.shutdown();
activity.setProgressInfoLower("8/11: Starting LuceneManager close.");
LuceneManager.close();
NidDataFromBdb.close();
activity.setProgressInfoLower("9/11: Starting mutable.bdbEnv.sync().");
mutable.bdbEnv.sync();
activity.setProgressInfoLower("10/11: mutable.bdbEnv.sync() finished.");
uuidsToNidMapDb.close();
nidCidMapDb.close();
stampDb.close();
conceptDb.close();
propDb.close();
mutable.bdbEnv.sync();
mutable.bdbEnv.close();
stampCache.clear();
activity.setProgressInfoLower("11/11: Shutdown complete");
} catch (DatabaseException e) {
AceLog.getAppLog().alertAndLogException(e);
} catch (Exception e) {
AceLog.getAppLog().alertAndLogException(e);
}
}
if (readOnly != null && readOnly.bdbEnv != null) {
readOnly.bdbEnv.close();
}
annotationConcepts = null;
conceptDb = null;
mutable = null;
nidCidMapDb = null;
pathManager = null;
propDb = null;
readOnly = null;
stampCache = null;
stampDb = null;
uuidsToNidMapDb = null;
ConceptChronicle.reset();
AceLog.getAppLog().info("bdb close finished.");
}
public static void addAsAnnotations(List<TtkRefexAbstractMemberChronicle<?>> members)
throws Exception {
conceptDb.iterateConceptDataInParallel(new AnnotationAdder(members));
}
public static UUID getPrimUuidForConcept(int cNid) throws IOException {
assert cNid == Bdb.getConceptNid(cNid) : " Not a concept nid: " + cNid;
return conceptDb.getConcept(cNid).getPrimordialUuid();
}