@Override
public void createDatePeriodStructure() {
try {
jdbcTemplate.execute("DROP TABLE IF EXISTS " + TABLE_NAME_DATE_PERIOD_STRUCTURE);
} catch (BadSqlGrammarException ex) {
// Do nothing, table does not exist
}
String quote = statementBuilder.getColumnQuote();
String sql =
"CREATE TABLE "
+ TABLE_NAME_DATE_PERIOD_STRUCTURE
+ " (dateperiod DATE NOT NULL PRIMARY KEY";
for (PeriodType periodType : PeriodType.PERIOD_TYPES) {
sql += ", " + quote + periodType.getName().toLowerCase() + quote + " VARCHAR(15)";
}
sql += ")";
log.info("Create date period structure SQL: " + sql);
jdbcTemplate.execute(sql);
}
@Override
public void createPeriodStructure() {
try {
jdbcTemplate.execute("DROP TABLE IF EXISTS " + TABLE_NAME_PERIOD_STRUCTURE);
} catch (BadSqlGrammarException ex) {
// Do nothing, table does not exist
}
String quote = statementBuilder.getColumnQuote();
String sql =
"CREATE TABLE "
+ TABLE_NAME_PERIOD_STRUCTURE
+ " (periodid INTEGER NOT NULL PRIMARY KEY, iso VARCHAR(15) NOT NULL, daysno INTEGER NOT NULL";
for (PeriodType periodType : PeriodType.PERIOD_TYPES) {
sql += ", " + quote + periodType.getName().toLowerCase() + quote + " VARCHAR(15)";
}
sql += ")";
log.info("Create period structure SQL: " + sql);
jdbcTemplate.execute(sql);
final String isoInSql = "create unique index in_periodstructure_iso on _periodstructure(iso)";
jdbcTemplate.execute(isoInSql);
}
public static PeriodType getByNameIgnoreCase(String name) {
for (PeriodType periodType : getAvailablePeriodTypes()) {
if (name != null
&& periodType.getName().toLowerCase().trim().equals(name.toLowerCase().trim())) {
return periodType;
}
}
return null;
}
/**
* Returns a period based on the given date string in ISO format. Returns null if the date string
* cannot be parsed to a period.
*
* @param isoPeriod the date string in ISO format.
* @return a period.
*/
public static Period getPeriodFromIsoString(String isoPeriod) {
if (isoPeriod != null) {
PeriodType periodType = getPeriodTypeFromIsoString(isoPeriod);
try {
return periodType != null ? periodType.createPeriod(isoPeriod) : null;
} catch (Exception ex) {
// Do nothing and return null
}
}
return null;
}
@Override
public int getActiveUsersCount(int days) {
Calendar cal = PeriodType.createCalendarInstance();
cal.add(Calendar.DAY_OF_YEAR, (days * -1));
return getActiveUsersCount(cal.getTime());
}
@Override
public String execute() throws Exception {
statementManager.initialise();
selectedPeriod = PeriodType.createPeriodExternalId(selectionManager.getSelectedPeriodIndex());
this.installPeriod();
List<ExportReport> reports = new ArrayList<ExportReport>();
for (String id : selectionManager.getListObject()) {
reports.add(exportReportService.getExportReport(Integer.parseInt(id)));
}
resetDecimalFormatByLocale(Locale.GERMAN);
applyPatternDecimalFormat(PATTERN_DECIMAL_FORMAT1);
executeGenerateOutputFile(reports);
this.complete();
statementManager.destroy();
return SUCCESS;
}
@Override
public boolean equals(Object o) {
if (this == o) {
return true;
}
if (o == null) {
return false;
}
if (!(o instanceof PeriodType)) {
return false;
}
final PeriodType other = (PeriodType) o;
return getName().equals(other.getName());
}
public Period getPeriod(String isoPeriod) {
Period period = PeriodType.getPeriodFromIsoString(isoPeriod);
if (period != null) {
period =
periodStore.getPeriod(period.getStartDate(), period.getEndDate(), period.getPeriodType());
}
return period;
}
public String execute() throws Exception {
// ---------------------------------------------------------------------
// Prepare values
// ---------------------------------------------------------------------
code = nullIfEmpty(code);
shortName = nullIfEmpty(shortName);
description = nullIfEmpty(description);
PeriodType periodType = PeriodType.getPeriodTypeByName(frequencySelect);
DataSet dataSet = new DataSet(name, shortName, code, periodType);
MapLegendSet legendSet = mappingService.getMapLegendSet(selectedLegendSetId);
dataSet.setExpiryDays(expiryDays);
dataSet.setTimelyDays(timelyDays);
dataSet.setSkipAggregation(skipAggregation);
for (String id : dataElementsSelectedList) {
dataSet.addDataElement(dataElementService.getDataElement(Integer.parseInt(id)));
}
Set<Indicator> indicators = new HashSet<Indicator>();
for (String id : indicatorsSelectedList) {
indicators.add(indicatorService.getIndicator(Integer.parseInt(id)));
}
if (categoryComboId != null) {
dataSet.setCategoryCombo(categoryService.getDataElementCategoryCombo(categoryComboId));
}
dataSet.setDescription(description);
dataSet.setVersion(1);
dataSet.setMobile(false);
dataSet.setIndicators(indicators);
dataSet.setNotificationRecipients(userGroupService.getUserGroup(notificationRecipients));
dataSet.setAllowFuturePeriods(allowFuturePeriods);
dataSet.setFieldCombinationRequired(fieldCombinationRequired);
dataSet.setValidCompleteOnly(validCompleteOnly);
dataSet.setNotifyCompletingUser(notifyCompletingUser);
dataSet.setApproveData(approveData);
dataSet.setSkipOffline(skipOffline);
dataSet.setDataElementDecoration(dataElementDecoration);
dataSet.setRenderAsTabs(renderAsTabs);
dataSet.setRenderHorizontally(renderHorizontally);
dataSet.setLegendSet(legendSet);
dataSetService.addDataSet(dataSet);
userService.assignDataSetToUserRole(dataSet);
return SUCCESS;
}
@Override
public String execute() throws Exception {
TaskId taskId = new TaskId(TaskCategory.DATAMART, currentUserService.getCurrentUser());
notifier.clear(taskId);
ScheduledTasks tasks = new ScheduledTasks();
// ---------------------------------------------------------------------
// Analytics
// ---------------------------------------------------------------------
if (analytics) {
analyticsTableTask.setTaskId(taskId);
tasks.addTask(resourceTableTask);
tasks.addTask(analyticsTableTask);
}
// ---------------------------------------------------------------------
// Data mart
// ---------------------------------------------------------------------
if (dataMart) {
Date start = DateUtils.getMediumDate(startDate);
Date end = DateUtils.getMediumDate(endDate);
List<Period> periods = new ArrayList<Period>();
for (String type : periodTypes) {
CalendarPeriodType periodType = (CalendarPeriodType) PeriodType.getPeriodTypeByName(type);
periods.addAll(periodType.generatePeriods(start, end));
}
if (periods.size() > 0) {
dataMartTask.setPeriods(periods);
dataMartTask.setTaskId(taskId);
tasks.addTask(dataMartTask);
}
}
if (!tasks.isEmpty()) {
scheduler.executeTask(tasks);
}
return SUCCESS;
}
@Override
public Collection<DataElementOperand> filterOperands(
final Collection<DataElementOperand> operands, final PeriodType periodType) {
final Collection<DataElementOperand> filteredOperands = new HashSet<>();
for (final DataElementOperand operand : operands) {
if (operand.getValueType().equals(VALUE_TYPE_INT)
&& operand.getAggregationOperator().equals(AGGREGATION_OPERATOR_SUM)
&& operand.getFrequencyOrder() <= periodType.getFrequencyOrder()) // Ignore disaggregation
{
filteredOperands.add(operand);
}
}
return filteredOperands;
}
private void handleUserQueryParams(UserQueryParams params) {
boolean canGrantOwnRoles =
(Boolean)
systemSettingManager.getSystemSetting(KEY_CAN_GRANT_OWN_USER_AUTHORITY_GROUPS, false);
params.setDisjointRoles(!canGrantOwnRoles);
if (params.getUser() == null) {
params.setUser(currentUserService.getCurrentUser());
}
if (params.getUser() != null && params.getUser().isSuper()) {
params.setCanManage(false);
params.setAuthSubset(false);
params.setDisjointRoles(false);
}
if (params.getInactiveMonths() != null) {
Calendar cal = PeriodType.createCalendarInstance();
cal.add(Calendar.MONTH, (params.getInactiveMonths() * -1));
params.setInactiveSince(cal.getTime());
}
}
public String execute() {
DataElement dataElement = dataElementService.getDataElement(dataElementId);
DataElementCategoryOptionCombo categoryOptionCombo =
categoryService.getDataElementCategoryOptionCombo(categoryOptionComboId);
Period period = PeriodType.createPeriodExternalId(periodId);
OrganisationUnit source = organisationUnitService.getOrganisationUnit(organisationUnitId);
DataValue dataValue =
dataValueService.getDataValue(source, dataElement, period, categoryOptionCombo);
boolean isMarked = dataValue.isFollowup();
dataValue.setFollowup(!isMarked);
dataValueService.updateDataValue(dataValue);
message = !isMarked ? "marked" : "unmarked";
log.info(!isMarked ? "Data value marked for follow-up" : "Data value unmarked for follow-up");
return SUCCESS;
}
public String execute() throws Exception {
String periodType = "Quarterly";
// periodType = periodType != null && !periodType.isEmpty() ? periodType :
// MonthlyPeriodType.NAME;
CalendarPeriodType _periodType =
(CalendarPeriodType) CalendarPeriodType.getPeriodTypeByName(periodType);
int thisYear = Calendar.getInstance().get(Calendar.YEAR);
int currentYear = (Integer) SessionUtils.getSessionVar(SessionUtils.KEY_CURRENT_YEAR, thisYear);
Calendar cal = PeriodType.createCalendarInstance();
// Cannot go to next year if current year equals this year
if (!(currentYear == thisYear && year > 0)) {
cal.set(Calendar.YEAR, currentYear);
cal.add(Calendar.YEAR, year);
SessionUtils.setSessionVar(SessionUtils.KEY_CURRENT_YEAR, cal.get(Calendar.YEAR));
}
periods = _periodType.generatePeriods(cal.getTime());
FilterUtils.filter(periods, new PastAndCurrentPeriodFilter());
Collections.reverse(periods);
for (Period period : periods) {
period.setName(format.formatPeriod(period));
}
return SUCCESS;
}
@Override
public String execute() throws Exception {
for (String aggregateValue : aggregateValues) {
// -----------------------------------------------------------------
// Get params
// -----------------------------------------------------------------
String[] info = aggregateValue.split(SEPERATE_SIGN);
int dataElementId = Integer.parseInt(info[0]);
int optionComboId = Integer.parseInt(info[1]);
String periodIsoId = info[2];
int orgunitId = Integer.parseInt(info[3]);
String resultValue = info[4];
// -----------------------------------------------------------------
// Create objects
// -----------------------------------------------------------------
DataElement dataElement = dataElementService.getDataElement(dataElementId);
DataElementCategoryOptionCombo optionCombo =
categoryService.getDataElementCategoryOptionCombo(optionComboId);
DataElementCategoryOptionCombo attributeOptioncombo =
categoryService.getDefaultDataElementCategoryOptionCombo();
Period period = PeriodType.getPeriodFromIsoString(periodIsoId);
OrganisationUnit orgunit = organisationUnitService.getOrganisationUnit(orgunitId);
DataValue dataValue =
dataValueService.getDataValue(
dataElement, period, orgunit, optionCombo, attributeOptioncombo);
// -----------------------------------------------------------------
// Save/Update/Delete data-values
// -----------------------------------------------------------------
if (resultValue != "0.0") {
if (dataValue == null) {
dataValue =
new DataValue(
dataElement,
period,
orgunit,
optionCombo,
attributeOptioncombo,
"" + resultValue,
CaseAggregationCondition.AUTO_STORED_BY,
new Date(),
null);
dataValueService.addDataValue(dataValue);
} else {
dataValue.setValue(resultValue);
dataValue.setLastUpdated(new Date());
dataValue.setStoredBy(CaseAggregationCondition.AUTO_STORED_BY);
dataValueService.updateDataValue(dataValue);
}
} else if (dataValue != null) {
dataValueService.deleteDataValue(dataValue);
}
}
return SUCCESS;
}
@Override
public String execute() throws Exception {
patient = patientService.getPatient(patientId);
Collection<Program> programs =
programService.getProgramsByCurrentUser(Program.MULTIPLE_EVENTS_WITH_REGISTRATION);
programs.addAll(
programService.getProgramsByCurrentUser(Program.SINGLE_EVENT_WITH_REGISTRATION));
// ---------------------------------------------------------------------
// Get relationship
// ---------------------------------------------------------------------
relationships = relationshipService.getRelationshipsForPatient(patient);
Collection<ProgramInstance> programInstances = patient.getProgramInstances();
// ---------------------------------------------------------------------
// Get patient-attribute-values
// ---------------------------------------------------------------------
Collection<PatientAttributeValue> _attributeValues =
patientAttributeValueService.getPatientAttributeValues(patient);
attributeValues = new HashSet<PatientAttributeValue>();
for (PatientAttributeValue attributeValue : _attributeValues) {
String value = attributeValue.getValue();
if (attributeValue.getPatientAttribute().getValueType().equals(PatientAttribute.TYPE_AGE)) {
Date date = format.parseDate(value);
value = PatientAttribute.getAgeFromDate(date) + "";
attributeValue.setValue(value);
}
attributeValues.add(attributeValue);
}
// ---------------------------------------------------------------------
// Get patient-identifiers
// ---------------------------------------------------------------------
Collection<PatientIdentifier> _identifiers = patient.getIdentifiers();
identifiers = new HashSet<PatientIdentifier>();
for (Program program : programs) {
Collection<PatientIdentifierType> identifierTypes = program.getIdentifierTypes();
for (PatientIdentifier identifier : _identifiers) {
if (!identifierTypes.contains(identifier.getIdentifierType())) {
identifiers.add(identifier);
}
}
}
// ---------------------------------------------------------------------
// Get program enrollment
// ---------------------------------------------------------------------
activeProgramInstances = new HashSet<ProgramInstance>();
completedProgramInstances = new HashSet<ProgramInstance>();
for (ProgramInstance programInstance : programInstances) {
if (programs.contains(programInstance.getProgram())) {
if (programInstance.getStatus() == ProgramInstance.STATUS_ACTIVE) {
activeProgramInstances.add(programInstance);
programIndicatorsMap.putAll(
programIndicatorService.getProgramIndicatorValues(programInstance));
} else {
completedProgramInstances.add(programInstance);
}
}
}
// ---------------------------------------------------------------------
// Patient-Audit
// ---------------------------------------------------------------------
patientAudits = patientAuditService.getPatientAudits(patient);
Calendar today = Calendar.getInstance();
PeriodType.clearTimeOfDay(today);
Date date = today.getTime();
String visitor = currentUserService.getCurrentUsername();
PatientAudit patientAudit =
patientAuditService.getPatientAudit(
patient.getId(), visitor, date, PatientAudit.MODULE_PATIENT_DASHBOARD);
if (patientAudit == null) {
patientAudit =
new PatientAudit(patient, visitor, date, PatientAudit.MODULE_PATIENT_DASHBOARD);
patientAuditService.savePatientAudit(patientAudit);
}
return SUCCESS;
}
/**
* Return the potential number of periods of the given period type which is spanned by this
* period.
*
* @param type the period type.
* @return the potential number of periods of the given period type spanned by this period.
*/
public int getPeriodSpan(PeriodType type) {
double no = (double) this.getFrequencyOrder() / type.getFrequencyOrder();
return (int) Math.floor(no);
}
@RequestMapping(method = RequestMethod.POST, produces = "text/plain")
public void saveDataValue(
@RequestParam String de,
@RequestParam String cc,
@RequestParam String pe,
@RequestParam String ou,
@RequestParam String value,
HttpServletResponse response) {
DataElement dataElement = dataElementService.getDataElement(de);
if (dataElement == null) {
ContextUtils.conflictResponse(response, "Illegal data element identifier: " + de);
return;
}
DataElementCategoryOptionCombo categoryOptionCombo =
categoryService.getDataElementCategoryOptionCombo(cc);
if (categoryOptionCombo == null) {
ContextUtils.conflictResponse(response, "Illegal category option combo identifier: " + cc);
return;
}
Period period = PeriodType.getPeriodFromIsoString(pe);
if (period == null) {
ContextUtils.conflictResponse(response, "Illegal period identifier: " + pe);
return;
}
OrganisationUnit organisationUnit = organisationUnitService.getOrganisationUnit(ou);
if (organisationUnit == null) {
ContextUtils.conflictResponse(response, "Illegal organisation unit identifier: " + ou);
return;
}
if (dataSetService.isLocked(dataElement, period, organisationUnit, null)) {
ContextUtils.conflictResponse(response, "Data set is locked");
return;
}
value = StringUtils.trimToNull(value);
String storedBy = currentUserService.getCurrentUsername();
Date now = new Date();
DataValue dataValue =
dataValueService.getDataValue(organisationUnit, dataElement, period, categoryOptionCombo);
if (dataValue == null) {
if (value != null) {
dataValue =
new DataValue(
dataElement,
period,
organisationUnit,
value,
storedBy,
now,
null,
categoryOptionCombo);
dataValueService.addDataValue(dataValue);
}
} else {
dataValue.setValue(value);
dataValue.setTimestamp(now);
dataValue.setStoredBy(storedBy);
dataValueService.updateDataValue(dataValue);
}
}
{
for (PeriodType periodType : PERIOD_TYPES) {
put(periodType.getName(), periodType);
}
}
@Override
public void setUpTest() {
mockDataValueBatchHandler = new MockBatchHandler<>();
mockBatchHandlerFactory = new MockBatchHandlerFactory();
mockBatchHandlerFactory.registerBatchHandler(
DataValueBatchHandler.class, mockDataValueBatchHandler);
setDependency(dataValueSetService, "batchHandlerFactory", mockBatchHandlerFactory);
categoryOptionA = createCategoryOption('A');
categoryOptionB = createCategoryOption('B');
categoryA = createDataElementCategory('A', categoryOptionA, categoryOptionB);
categoryComboA = createCategoryCombo('A', categoryA);
ocDef = categoryService.getDefaultDataElementCategoryOptionCombo();
ocA = createCategoryOptionCombo(categoryComboA, categoryOptionA);
ocB = createCategoryOptionCombo(categoryComboA, categoryOptionB);
deA = createDataElement('A');
deB = createDataElement('B');
deC = createDataElement('C');
deD = createDataElement('D');
dsA = createDataSet('A', new MonthlyPeriodType());
ouA = createOrganisationUnit('A');
ouB = createOrganisationUnit('B');
ouC = createOrganisationUnit('C');
peA =
createPeriod(
PeriodType.getByNameIgnoreCase(MonthlyPeriodType.NAME),
getDate(2012, 1, 1),
getDate(2012, 1, 31));
peB =
createPeriod(
PeriodType.getByNameIgnoreCase(MonthlyPeriodType.NAME),
getDate(2012, 2, 1),
getDate(2012, 2, 29));
ocA.setUid("kjuiHgy67hg");
ocB.setUid("Gad33qy67g5");
deA.setUid("f7n9E0hX8qk");
deB.setUid("Ix2HsbDMLea");
deC.setUid("eY5ehpbEsB7");
dsA.setUid("pBOMPrpg1QX");
ouA.setUid("DiszpKrYNg8");
ouB.setUid("BdfsJfj87js");
ouC.setUid("j7Hg26FpoIa");
ocA.setCode("OC_A");
ocB.setCode("OC_B");
deA.setCode("DE_A");
deB.setCode("DE_B");
deC.setCode("DE_C");
deD.setCode("DE_D");
dsA.setCode("DS_A");
ouA.setCode("OU_A");
ouB.setCode("OU_B");
ouC.setCode("OU_C");
categoryService.addDataElementCategoryOption(categoryOptionA);
categoryService.addDataElementCategoryOption(categoryOptionB);
categoryService.addDataElementCategory(categoryA);
categoryService.addDataElementCategoryCombo(categoryComboA);
categoryService.addDataElementCategoryOptionCombo(ocA);
categoryService.addDataElementCategoryOptionCombo(ocB);
dataElementService.addDataElement(deA);
dataElementService.addDataElement(deB);
dataElementService.addDataElement(deC);
dataElementService.addDataElement(deD);
dataSetService.addDataSet(dsA);
organisationUnitService.addOrganisationUnit(ouA);
organisationUnitService.addOrganisationUnit(ouB);
organisationUnitService.addOrganisationUnit(ouC);
periodService.addPeriod(peA);
periodService.addPeriod(peB);
user = createUser('A');
user.setOrganisationUnits(Sets.newHashSet(ouA, ouB));
CurrentUserService currentUserService = new MockCurrentUserService(user);
setDependency(dataValueSetService, "currentUserService", currentUserService);
}
public PeriodType getPeriodTypeByName(String name) {
return PeriodType.getPeriodTypeByName(name);
}
public List<PeriodType> getAllPeriodTypes() {
return PeriodType.getAvailablePeriodTypes();
}