@UiHandler("increaseThreePrime")
public void increaseThreePrime(ClickEvent e) {
try {
fivePrimeValue = Integer.parseInt(fivePrimeField.getText());
threePrimeValue = Integer.parseInt(threePrimeField.getText()) + 1; // intended action
} catch (Exception error) {
coordinatesToPrime(
this.internalAnnotationInfo.getMin(), this.internalAnnotationInfo.getMax());
return;
}
if (verifyOperation()) {
triggerUpdate(fivePrimeValue, threePrimeValue);
}
}
@UiHandler("createButton")
public void handleSaveNewOrganism(ClickEvent clickEvent) {
OrganismInfo organismInfo = new OrganismInfo();
organismInfo.setName(organismName.getText());
organismInfo.setDirectory(sequenceFile.getText());
organismInfo.setGenus(genus.getText());
organismInfo.setSpecies(species.getText());
organismInfo.setBlatDb(blatdb.getText());
createButton.setEnabled(false);
createButton.setText("Processing");
savingNewOrganism = true;
OrganismRestService.createOrganism(new UpdateInfoListCallback(), organismInfo);
loadingDialog.show();
}
@UiHandler("organismName")
public void handleOrganismNameChange(ChangeEvent changeEvent) {
if (singleSelectionModel.getSelectedObject() != null) {
singleSelectionModel.getSelectedObject().setName(organismName.getText());
updateOrganismInfo();
}
}
@UiHandler("blatdb")
public void handleBlatDbChange(ChangeEvent changeEvent) {
if (singleSelectionModel.getSelectedObject() != null) {
singleSelectionModel.getSelectedObject().setBlatDb(blatdb.getText());
updateOrganismInfo();
}
}
@UiHandler("species")
public void handleSpeciesChange(ChangeEvent changeEvent) {
if (singleSelectionModel.getSelectedObject() != null) {
singleSelectionModel.getSelectedObject().setSpecies(species.getText());
updateOrganismInfo();
}
}
@UiHandler("genus")
public void handleGenusChange(ChangeEvent changeEvent) {
if (singleSelectionModel.getSelectedObject() != null) {
singleSelectionModel.getSelectedObject().setGenus(genus.getText());
updateOrganismInfo();
}
}
@UiHandler("sequenceFile")
public void handleOrganismDirectory(ChangeEvent changeEvent) {
if (singleSelectionModel.getSelectedObject() != null) {
singleSelectionModel.getSelectedObject().setDirectory(sequenceFile.getText());
updateOrganismInfo();
}
}
@UiHandler("threePrimeField")
public void threePrimeTextFocus(BlurEvent b) {
try {
fivePrimeValue = Integer.parseInt(fivePrimeField.getText());
threePrimeValue = Integer.parseInt(threePrimeField.getText());
} catch (Exception error) {
coordinatesToPrime(
this.internalAnnotationInfo.getMin(), this.internalAnnotationInfo.getMax());
return;
}
if (verifyOperation()) {
triggerUpdate(fivePrimeValue, threePrimeValue);
} else {
coordinatesToPrime(
this.internalAnnotationInfo.getMin(), this.internalAnnotationInfo.getMax());
}
}
@Override
public void onPreviewNativeEvent(NativePreviewEvent e) {
NativeEvent nativeEvent = e.getNativeEvent();
if ("keydown".equals(nativeEvent.getType())) {
if (nativeEvent.getKeyCode() == KeyCodes.KEY_ENTER) {
doLogin(userBox.getText().trim(), passBox.getText(), rememberBox.getValue());
}
}
}
@UiHandler("threePrimeField")
public void threePrimeTextEntry(KeyDownEvent k) {
if (k.getNativeKeyCode() == KeyCodes.KEY_ENTER) {
try {
fivePrimeValue = Integer.parseInt(fivePrimeField.getText());
threePrimeValue = Integer.parseInt(threePrimeField.getText());
} catch (Exception error) {
coordinatesToPrime(
this.internalAnnotationInfo.getMin(), this.internalAnnotationInfo.getMax());
return;
}
if (verifyOperation()) {
triggerUpdate(fivePrimeValue, threePrimeValue);
} else {
coordinatesToPrime(
this.internalAnnotationInfo.getMin(), this.internalAnnotationInfo.getMax());
}
}
}
@Override
public String getMaxIntervalsValue() {
return maxIntervalsTextBox.getText();
}
@Override
public String getPersistenceUnitName() {
return persistenceUnitTextBox.getText();
}
@Override
public String getPersistenceProvider() {
return persistenceProviderTextBox.getText();
}
@Override
public String getJTADataSource() {
return datasourceTextBox.getText();
}
@Override
public String getValue() {
return textBox.getText();
}
@UiHandler("loginButton")
public void submitAction(ClickEvent e) {
doLogin(userBox.getText().trim(), passBox.getText(), rememberBox.getValue());
}
@Override
public String getPattern() {
return searchPatternTextBox.getText();
}
@Override
public String getNewPropertyValue() {
return newPropertyValueTextBox.getText();
}
@UiHandler("search")
public void onSearchClick(final ClickEvent e) {
errorPanel.clear();
formGroup.setValidationState(ValidationState.NONE);
final Map<String, Object> metadata = new HashMap<String, Object>();
if (!sourceTextBox.getText().trim().isEmpty()) {
metadata.put("dcore.source[0]", sourceTextBox.getText().trim());
}
if (!createdByTextBox.getText().trim().isEmpty()) {
metadata.put("createdBy", createdByTextBox.getText().trim());
}
if (!descriptionByTextBox.getText().trim().isEmpty()) {
metadata.put("dcore.description[0]", descriptionByTextBox.getText().trim());
}
if (!formatTypeahead.getText().trim().isEmpty()) {
final String pattern =
clientTypeRegistry.resolveWildcardPattern(formatTypeahead.getText().trim());
metadata.put("filename", pattern);
}
if (!subjectTextBox.getText().trim().isEmpty()) {
metadata.put("dcore.subject[0]", subjectTextBox.getText().trim());
}
if (!typeTextBox.getText().trim().isEmpty()) {
metadata.put("dcore.type[0]", typeTextBox.getText().trim());
}
if (!lastModifiedByTextBox.getText().trim().isEmpty()) {
metadata.put("lastModifiedBy", lastModifiedByTextBox.getText().trim());
}
if (!externalLinkTextBox.getText().trim().isEmpty()) {
metadata.put("dcore.relation[0]", externalLinkTextBox.getText().trim());
}
if (!checkinCommentTextBox.getText().trim().isEmpty()) {
metadata.put("checkinComment", checkinCommentTextBox.getText().trim());
}
boolean hasSomeDateValue = false;
if (createdAfter.getValue() != null) {
hasSomeDateValue = true;
}
if (createdBefore.getValue() != null) {
hasSomeDateValue = true;
}
if (lastModifiedAfter.getValue() != null) {
hasSomeDateValue = true;
}
if (lastModifiedBefore.getValue() != null) {
hasSomeDateValue = true;
}
if (metadata.size() == 0 && !hasSomeDateValue) {
formGroup.setValidationState(ValidationState.ERROR);
Alert alert = new Alert(Constants.INSTANCE.AtLeastOneFieldMustBeSet(), AlertType.DANGER);
alert.setVisible(true);
alert.setDismissable(true);
errorPanel.add(alert);
return;
}
final SearchResultTable queryTable =
new SearchResultTable(
new QueryMetadataPageRequest(
metadata,
createdAfter.getValue(),
createdBefore.getValue(),
lastModifiedAfter.getValue(),
lastModifiedBefore.getValue(),
0,
null));
simplePanel.clear();
simplePanel.add(queryTable);
formAccordionCollapse.setIn(false);
resultAccordionCollapse.setIn(true);
}