@Override
protected void tearDown() throws Exception {
JAI.getDefaultInstance().setTileScheduler(jaiTileScheduler);
GPF.getDefaultInstance().getOperatorSpiRegistry().removeOperatorSpi(OP2_SPI);
GPF.getDefaultInstance().getOperatorSpiRegistry().removeOperatorSpi(OP3_SPI);
GPF.getDefaultInstance().getOperatorSpiRegistry().removeOperatorSpi(OUTPUT_OP_SPI);
}
@Override
protected void setUp() throws Exception {
context = new GraphCommandLineContext();
clTool = new CommandLineTool(context);
GPF.getDefaultInstance().getOperatorSpiRegistry().addOperatorSpi(OP2_SPI);
GPF.getDefaultInstance().getOperatorSpiRegistry().addOperatorSpi(OP3_SPI);
GPF.getDefaultInstance().getOperatorSpiRegistry().addOperatorSpi(OUTPUT_OP_SPI);
JAI jai = JAI.getDefaultInstance();
jaiTileScheduler = jai.getTileScheduler();
SunTileScheduler tileScheduler = new SunTileScheduler();
tileScheduler.setParallelism(Runtime.getRuntime().availableProcessors());
jai.setTileScheduler(tileScheduler);
}
@Override
protected Product createTargetProduct() throws Exception {
final Product sourceProduct = form.getSourceProduct();
final Product radioCorrProduct =
GPF.createProduct(alias, parameterSupport.getParameterMap(), sourceProduct);
if (isEnvisatFormatSelected() && getTargetProductSelector().getModel().isSaveToFileSelected()) {
final HashMap<String, Object> n1Parameters = new HashMap<String, Object>();
n1Parameters.put("patchedFile", getTargetProductSelector().getModel().getProductFile());
final HashMap<String, Product> sourceProductMap = new HashMap<String, Product>();
sourceProductMap.put("n1", form.getSourceProduct());
sourceProductMap.put("input", radioCorrProduct);
return GPF.createProduct("Meris.N1Patcher", n1Parameters, sourceProductMap);
}
return radioCorrProduct;
}
@Override
protected Product createTargetProduct() throws Exception {
final Map<String, Product> productMap = form.getProductMap();
final Map<String, Object> parameterMap = new HashMap<String, Object>();
form.updateParameterMap(parameterMap);
return GPF.createProduct(OPERATOR_NAME, parameterMap, productMap);
}
@Override
protected Product createTargetProduct() throws Exception {
if (validateUI()) {
opUI.updateParameters();
final HashMap<String, Product> sourceProducts = ioParametersPanel.createSourceProductsMap();
return GPF.createProduct(operatorName, parameterSupport.getParameterMap(), sourceProducts);
}
return null;
}
ReprojectionDialog(
boolean orthorectify, final String title, final String helpID, AppContext appContext) {
super(appContext, title, ID_APPLY_CLOSE, helpID);
form = new ReprojectionForm(getTargetProductSelector(), orthorectify, appContext);
final OperatorSpi operatorSpi =
GPF.getDefaultInstance().getOperatorSpiRegistry().getOperatorSpi(OPERATOR_NAME);
ParameterUpdater parameterUpdater = new ReprojectionParameterUpdater();
OperatorParameterSupport parameterSupport =
new OperatorParameterSupport(operatorSpi.getOperatorClass(), null, null, parameterUpdater);
OperatorMenu operatorMenu =
new OperatorMenu(
this.getJDialog(), operatorSpi.getOperatorClass(), parameterSupport, helpID);
getJDialog().setJMenuBar(operatorMenu.createDefaultMenu());
}
private Map<String, Object> convertParameterMap(
String operatorName, Map<String, String> parameterMap) throws ValidationException {
HashMap<String, Object> parameters = new HashMap<String, Object>();
PropertyContainer container =
ParameterDescriptorFactory.createMapBackedOperatorPropertyContainer(
operatorName, parameters);
// explicitly set default values for putting them into the backing map
container.setDefaultValues();
// handle xml parameters
Object parametersObject = metadataResourceEngine.getVelocityContext().get("parameterFile");
if (parametersObject instanceof Resource) {
Resource paramatersResource = (Resource) parametersObject;
if (paramatersResource.isXml()) {
OperatorSpiRegistry operatorSpiRegistry = GPF.getDefaultInstance().getOperatorSpiRegistry();
OperatorSpi operatorSpi = operatorSpiRegistry.getOperatorSpi(operatorName);
Class<? extends Operator> operatorClass = operatorSpi.getOperatorClass();
DefaultDomConverter domConverter =
new DefaultDomConverter(operatorClass, new ParameterDescriptorFactory());
DomElement parametersElement = createDomElement(paramatersResource.getContent());
try {
domConverter.convertDomToValue(parametersElement, container);
} catch (ConversionException e) {
String msgPattern = "Can not convert XML parameters for operator '%s'";
throw new RuntimeException(String.format(msgPattern, operatorName));
}
}
}
for (Entry<String, String> entry : parameterMap.entrySet()) {
String paramName = entry.getKey();
String paramValue = entry.getValue();
final Property property = container.getProperty(paramName);
if (property != null) {
property.setValueFromText(paramValue);
} else {
throw new RuntimeException(
String.format("Parameter '%s' is not known by operator '%s'", paramName, operatorName));
}
}
return parameters;
}
RadiometryDialog(String alias, AppContext appContext, String title, String helpId) {
super(
appContext,
title,
ID_APPLY_CLOSE,
helpId,
TargetProductSelectorModel.createEnvisatTargetProductSelectorModel());
this.alias = alias;
final OperatorSpi operatorSpi =
GPF.getDefaultInstance().getOperatorSpiRegistry().getOperatorSpi(alias);
parameterSupport = new OperatorParameterSupport(operatorSpi.getOperatorClass());
form =
new RadiometryForm(
appContext, operatorSpi, parameterSupport.getPopertySet(), getTargetProductSelector());
OperatorMenu operatorMenu =
new OperatorMenu(
this.getJDialog(), operatorSpi.getOperatorClass(), parameterSupport, helpId);
getJDialog().setJMenuBar(operatorMenu.createDefaultMenu());
}
public NestSingleTargetProductDialog(
String operatorName, AppContext appContext, String title, String helpID) {
super(operatorName, appContext, title, helpID);
final OperatorSpi operatorSpi =
GPF.getDefaultInstance().getOperatorSpiRegistry().getOperatorSpi(operatorName);
if (operatorSpi == null) {
throw new IllegalArgumentException("operatorName " + operatorName);
}
opUI = operatorSpi.createOperatorUI();
addParameters(operatorSpi, appContext, helpID);
getJDialog().setMinimumSize(new Dimension(450, 450));
getJDialog().setIconImage(ResourceUtils.esaPlanetIcon.getImage());
statusLabel = new JLabel("");
statusLabel.setForeground(new Color(255, 0, 0));
this.getJDialog().getContentPane().add(statusLabel, BorderLayout.NORTH);
}
static {
GPF.getDefaultInstance().getOperatorSpiRegistry().loadOperatorSpis();
}
private void runGraph() throws Exception {
final OperatorSpiRegistry operatorSpiRegistry =
GPF.getDefaultInstance().getOperatorSpiRegistry();
Map<String, String> templateVariables = getRawParameterMap();
Map<String, String> sourceNodeIdMap = getSourceNodeIdMap();
templateVariables.putAll(sourceNodeIdMap);
// todo - use Velocity and the current Velocity context for reading the graph XML! (nf,
// 20120610)
Graph graph = readGraph(commandLineArgs.getGraphFilePath(), templateVariables);
Node lastNode = graph.getNode(graph.getNodeCount() - 1);
SortedMap<String, String> sourceFilePathsMap = commandLineArgs.getSourceFilePathMap();
// For each source path add a ReadOp to the graph
String readOperatorAlias = OperatorSpi.getOperatorAlias(ReadOp.class);
for (Entry<String, String> entry : sourceFilePathsMap.entrySet()) {
String sourceId = entry.getKey();
String sourceFilePath = entry.getValue();
String sourceNodeId = sourceNodeIdMap.get(sourceId);
if (graph.getNode(sourceNodeId) == null) {
DomElement configuration = new DefaultDomElement("parameters");
configuration.createChild("file").setValue(sourceFilePath);
Node sourceNode = new Node(sourceNodeId, readOperatorAlias);
sourceNode.setConfiguration(configuration);
graph.addNode(sourceNode);
}
}
final String operatorName = lastNode.getOperatorName();
final OperatorSpi lastOpSpi = operatorSpiRegistry.getOperatorSpi(operatorName);
if (lastOpSpi == null) {
throw new GraphException(
String.format("Unknown operator name '%s'. No SPI found.", operatorName));
}
if (!Output.class.isAssignableFrom(lastOpSpi.getOperatorClass())) {
// If the graph's last node does not implement Output, then add a WriteOp
String writeOperatorAlias = OperatorSpi.getOperatorAlias(WriteOp.class);
DomElement configuration = new DefaultDomElement("parameters");
configuration.createChild("file").setValue(commandLineArgs.getTargetFilePath());
configuration.createChild("formatName").setValue(commandLineArgs.getTargetFormatName());
configuration
.createChild("clearCacheAfterRowWrite")
.setValue(Boolean.toString(commandLineArgs.isClearCacheAfterRowWrite()));
Node targetNode = new Node(WRITE_OP_ID_PREFIX + lastNode.getId(), writeOperatorAlias);
targetNode.addSource(new NodeSource("source", lastNode.getId()));
targetNode.setConfiguration(configuration);
graph.addNode(targetNode);
}
executeGraph(graph);
VelocityContext velocityContext = metadataResourceEngine.getVelocityContext();
File graphFile = new File(commandLineArgs.getGraphFilePath());
velocityContext.put("graph", graph);
metadataResourceEngine.readResource("graphXml", graphFile.getPath());
}
public void initialize() throws OperatorException {
// System.out.println("starting...");
if (new File(SynergyConstants.SYNERGY_AUXDATA_HOME_DEFAULT).exists()) {
auxdataPath =
SynergyConstants.SYNERGY_AUXDATA_HOME_DEFAULT
+ File.separator
+ "aerosolLUTs"
+ File.separator
+ "ocean";
} else {
// try this one (in case of calvalus processing)
auxdataPath = SynergyConstants.SYNERGY_AUXDATA_CALVALUS_DEFAULT;
}
noDataVal = (float) SynergyConstants.OUTPUT_AOT_BAND_NODATAVALUE;
// get the glint product...
Map<String, Product> glintInput = new HashMap<String, Product>(3);
glintInput.put("l1bSynergy", synergyProduct);
Map<String, Object> glintAveParams = new HashMap<String, Object>(2);
glintAveParams.put("aveBlock", aveBlock);
glintProduct =
GPF.createProduct(
OperatorSpi.getOperatorAlias(GlintAveOp.class), glintAveParams, glintInput);
scalingFactor = aveBlock;
aveBlock /= 2;
minNAve = (int) (scalingFactor * scalingFactor - 1);
noDataVal = (float) SynergyConstants.OUTPUT_AOT_BAND_NODATAVALUE;
createTargetProduct();
// targetProduct = glintProduct; // test
// correction of azimuth discontinuity:
// set up tiles for MERIS and AATSR which cover the whole scene...
final int sceneWidth = synergyProduct.getSceneRasterWidth();
final int sceneHeight = synergyProduct.getSceneRasterHeight();
final Rectangle rect = new Rectangle(0, 0, sceneWidth, sceneHeight);
vaMerisTileComplete = getSourceTile(synergyProduct.getTiePointGrid("view_azimuth"), rect);
vaAatsrNadirTileComplete =
getSourceTile(
synergyProduct.getBand(
"view_azimuth_nadir" + "_" + SynergyConstants.INPUT_BANDS_SUFFIX_AATSR + ""),
rect);
aot550Result = new float[sceneWidth][sceneHeight];
angResult = new float[sceneWidth][sceneHeight];
aot550ErrorResult = new float[sceneWidth][sceneHeight];
angErrorResult = new float[sceneWidth][sceneHeight];
glintResult = new float[sceneWidth][sceneHeight];
wsResult = new float[sceneWidth][sceneHeight];
// read aerosol class table
try {
aerosolClassTable = AerosolAuxData.getInstance().createAerosolClassTable();
} catch (IOException e) {
throw new OperatorException("Failed to read aerosol class table:\n" + e.getMessage(), e);
}
// read aerosol models
try {
aerosolModelTable = AerosolAuxData.getInstance().createAerosolModelTable(auxdataPath);
} catch (IOException e) {
throw new OperatorException("Failed to read aerosol class table:\n" + e.getMessage(), e);
}
// wvl=[ 865, 885,1610, 885,1610, 885]
wvl = new float[] {865.0f, 885.0f, 1610.0f, 885.0f, 1610.0f, 885.0f};
wvlWeight = new float[] {1.0f, 1.0f, 3.0f, 1.0f, 3.0f, 3.0f};
wvlIndex = new int[] {0, 3, 5};
// at this point, just use 1 MERIS and 1 AATSR channel...
// todo: clarify with RP which we should finally use
// find model indices belonging to aerosol classes...
final List<Integer> modelIndices = aerosolModelTable.getMaritimeAndDesertIndices();
nMod = modelIndices.size();
nWvl = wvlIndex.length;
try {
aerosolLookupTables =
AerosolAuxData.getInstance()
.createAerosolOceanLookupTables(
auxdataPath, modelIndices,
wvl, wvlIndex);
} catch (IOException e) {
throw new OperatorException("Failed to create aerosol lookup tables:\n" + e.getMessage(), e);
// String msg = SynergyConstants.AUXDATA_ERROR_MESSAGE;
// SynergyUtils.logErrorMessage(msg);
}
nTauLut = aerosolLookupTables[0][0].getDimensions()[4].getSequence().length;
interpol5DResultLow = new double[nMod][nWvl][nTauLut];
interpol5DResultHigh = new double[nMod][nWvl][nTau];
interpolAngResult = new float[nWvl][nTau][nAng];
costFunction = new float[nWvl][nTau][nAng];
vectorTauLut = new double[nTauLut];
for (int i = 0; i < nTauLut; i++) {
vectorTauLut[i] = i * 2.0 / (nTauLut - 1);
}
vectorTauLutHigh = new double[nTau];
for (int i = 0; i < nTau; i++) {
vectorTauLutHigh[i] = i * 2.0 / (nTau - 1);
}
final float[] angArray = aerosolModelTable.getAngArray(modelIndices, 0);
angstroemParameters = AerosolHelpers.getInstance().getAngstroemParameters(angArray, nAng);
// read corresponding small LUTs and make a big LUT...
// correct azimuths in these tiles for later usage...
GlintPreparation.correctViewAzimuthLinear(vaMerisTileComplete, rect);
GlintPreparation.correctViewAzimuthLinear(vaAatsrNadirTileComplete, rect);
}