public void removeNodeFromParent(DatasetConfigTreeNode node) {
Object child = node.getUserObject();
if (node.getParent() == null) return; // Can't remove root node.
Object parent = ((DatasetConfigTreeNode) node.getParent()).getUserObject();
if (parent instanceof org.ensembl.mart.lib.config.DatasetConfig) {
if (child instanceof org.ensembl.mart.lib.config.FilterPage) {
config = (DatasetConfig) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
config.removeFilterPage((FilterPage) node.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.AttributePage) {
config = (DatasetConfig) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
config.removeAttributePage((AttributePage) node.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.Exportable) {
config = (DatasetConfig) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
config.removeExportable((Exportable) node.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.Importable) {
config = (DatasetConfig) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
config.removeImportable((Importable) node.getUserObject());
}
} else if (node.getUserObject() instanceof DynamicDataset) {
config =
(DatasetConfig) ((DatasetConfigTreeNode) node.getParent().getParent()).getUserObject();
config.removeDynamicDataset((DynamicDataset) node.getUserObject());
} else if (parent instanceof org.ensembl.mart.lib.config.FilterPage) {
if (child instanceof org.ensembl.mart.lib.config.FilterGroup) {
FilterPage fp = (FilterPage) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
fp.removeFilterGroup((FilterGroup) node.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.FilterGroup) {
if (child instanceof org.ensembl.mart.lib.config.FilterCollection) {
FilterGroup fg = (FilterGroup) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
fg.removeFilterCollection((FilterCollection) node.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.FilterCollection) {
if (child instanceof org.ensembl.mart.lib.config.FilterDescription) {
FilterCollection fc =
(FilterCollection) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
fc.removeFilterDescription((FilterDescription) node.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.FilterDescription) {
if (child instanceof org.ensembl.mart.lib.config.Option) {
FilterDescription fd =
(FilterDescription) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
fd.removeOption((Option) node.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.SpecificFilterContent) {
FilterDescription ad =
(FilterDescription) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
ad.removeSpecificFilterContent((SpecificFilterContent) node.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.Option) {
if (child instanceof org.ensembl.mart.lib.config.SpecificOptionContent) {
Option ad = (Option) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
ad.removeSpecificOptionContent((SpecificOptionContent) node.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.PushAction) {
Option op = (Option) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
op.removePushAction((PushAction) node.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.Option) {
Option fd = (Option) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
fd.removeOption((Option) node.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.PushAction) {
if (child instanceof org.ensembl.mart.lib.config.Option) {
PushAction pa = (PushAction) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
pa.removeOption((Option) node.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.AttributePage) {
if (child instanceof org.ensembl.mart.lib.config.AttributeGroup) {
AttributePage ap =
(AttributePage) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
ap.removeAttributeGroup((AttributeGroup) node.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.AttributeGroup) {
if (child instanceof org.ensembl.mart.lib.config.AttributeCollection) {
AttributeGroup ag =
(AttributeGroup) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
ag.removeAttributeCollection((AttributeCollection) node.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.AttributeCollection) {
if (child instanceof org.ensembl.mart.lib.config.AttributeDescription) {
AttributeCollection ac =
(AttributeCollection) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
ac.removeAttributeDescription((AttributeDescription) node.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.AttributeList) {
AttributeCollection ac =
(AttributeCollection) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
ac.removeAttributeList((AttributeList) node.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.AttributeDescription) {
if (child instanceof org.ensembl.mart.lib.config.SpecificAttributeContent) {
AttributeDescription ad =
(AttributeDescription) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
ad.removeSpecificAttributeContent((SpecificAttributeContent) node.getUserObject());
}
}
super.removeNodeFromParent(node);
}
public void reload(DatasetConfigTreeNode editingNode, DatasetConfigTreeNode parentNode) {
int start, finish;
String parentClassName = (parentNode.getUserObject().getClass()).getName();
String childClassName = (editingNode.getUserObject().getClass()).getName();
start = childClassName.lastIndexOf(".") + 1;
finish = childClassName.length();
String childName = childClassName.substring(start, finish);
if (parentClassName.equals("org.ensembl.mart.lib.config.DatasetConfig")) {
if (childClassName.equals("org.ensembl.mart.lib.config.FilterPage")) {
config = (DatasetConfig) parentNode.getUserObject();
config.addFilterPage((FilterPage) editingNode.getUserObject());
// config.removeAttributePage();
} else if (childClassName.equals("org.ensembl.mart.lib.config.AttributePage")) {
config = (DatasetConfig) parentNode.getUserObject();
config.addAttributePage((AttributePage) editingNode.getUserObject());
} else if (childClassName.equals("org.ensembl.mart.lib.config.Importable")) {
config = (DatasetConfig) parentNode.getUserObject();
config.addImportable((Importable) editingNode.getUserObject());
} else if (childClassName.equals("org.ensembl.mart.lib.config.Exportable")) {
config = (DatasetConfig) parentNode.getUserObject();
config.addExportable((Exportable) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.FilterPage")) {
if (childClassName.equals("org.ensembl.mart.lib.config.FilterGroup")) {
FilterPage fp = (FilterPage) parentNode.getUserObject();
fp.addFilterGroup((FilterGroup) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.FilterGroup")) {
if (childClassName.equals("org.ensembl.mart.lib.config.FilterCollection")) {
FilterGroup fg = (FilterGroup) parentNode.getUserObject();
fg.addFilterCollection((FilterCollection) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.FilterCollection")) {
if (childClassName.equals("org.ensembl.mart.lib.config.FilterDescription")) {
FilterCollection fc = (FilterCollection) parentNode.getUserObject();
fc.addFilterDescription((FilterDescription) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.FilterDescription")) {
if (childClassName.equals("org.ensembl.mart.lib.config.Option")) {
FilterDescription fd = (FilterDescription) parentNode.getUserObject();
fd.addOption((Option) editingNode.getUserObject());
} else if (childClassName.equals("org.ensembl.mart.lib.config.SpecificFilterContent")) {
FilterDescription ad = (FilterDescription) parentNode.getUserObject();
ad.addSpecificFilterContent((SpecificFilterContent) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.Option")) {
if (childClassName.equals("org.ensembl.mart.lib.config.SpecificOptionContent")) {
Option ad = (Option) parentNode.getUserObject();
ad.addSpecificOptionContent((SpecificOptionContent) editingNode.getUserObject());
} else if (childClassName.equals("org.ensembl.mart.lib.config.PushAction")) {
Option op = (Option) parentNode.getUserObject();
op.addPushAction((PushAction) editingNode.getUserObject());
} else if (childClassName.equals("org.ensembl.mart.lib.config.Option")) {
Option op = (Option) parentNode.getUserObject();
op.addOption((Option) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.PushAction")) {
if (childClassName.equals("org.ensembl.mart.lib.config.Option")) {
PushAction pa = (PushAction) parentNode.getUserObject();
pa.addOption((Option) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.AttributePage")) {
if (childClassName.equals("org.ensembl.mart.lib.config.AttributeGroup")) {
AttributePage ap = (AttributePage) parentNode.getUserObject();
ap.addAttributeGroup((AttributeGroup) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.AttributeGroup")) {
if (childClassName.equals("org.ensembl.mart.lib.config.AttributeCollection")) {
AttributeGroup ag = (AttributeGroup) parentNode.getUserObject();
ag.addAttributeCollection((AttributeCollection) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.AttributeCollection")) {
if (childClassName.equals("org.ensembl.mart.lib.config.AttributeDescription")) {
AttributeCollection ac = (AttributeCollection) parentNode.getUserObject();
ac.addAttributeDescription((AttributeDescription) editingNode.getUserObject());
} else if (childClassName.equals("org.ensembl.mart.lib.config.AttributeList")) {
AttributeCollection ac = (AttributeCollection) parentNode.getUserObject();
ac.addAttributeList((AttributeList) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.AttributeDescription")) {
if (childClassName.equals("org.ensembl.mart.lib.config.SpecificAttributeContent")) {
AttributeDescription ad = (AttributeDescription) parentNode.getUserObject();
ad.addSpecificAttributeContent((SpecificAttributeContent) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.SpecificFilterContent")) {
if (childClassName.equals("org.ensembl.mart.lib.config.Option")) {
SpecificFilterContent fd = (SpecificFilterContent) parentNode.getUserObject();
System.out.println(
"TREE MODEL -- ADDING DYN OPTION "
+ ((Option) editingNode.getUserObject()).getInternalName());
fd.addOption((Option) editingNode.getUserObject());
}
}
super.reload(parentNode);
}
public String insertNodeInto(
DatasetConfigTreeNode editingNode, DatasetConfigTreeNode parentNode, int index) {
int start, finish;
Object child = editingNode.getUserObject();
Object parent = parentNode.getUserObject();
BaseNamedConfigurationObject parentObj = (BaseNamedConfigurationObject) parent;
BaseNamedConfigurationObject childObj = (BaseNamedConfigurationObject) child;
if (parentObj.getHidden() != null && parentObj.getHidden().equals("true")) {
childObj.setHidden("true");
Enumeration children = editingNode.breadthFirstEnumeration();
DatasetConfigTreeNode childNode = null;
while (children.hasMoreElements()) {
childNode = (DatasetConfigTreeNode) children.nextElement();
BaseNamedConfigurationObject ch = (BaseNamedConfigurationObject) childNode.getUserObject();
ch.setHidden("true");
}
}
String childClassName = (editingNode.getUserObject().getClass()).getName();
start = childClassName.lastIndexOf(".") + 1;
finish = childClassName.length();
String childName = childClassName.substring(start, finish);
// index is a Node index. objectIndex may be different
int objIndex = index - DatasetConfigTreeNode.getHeterogenousOffset(parent, child);
if (parent instanceof org.ensembl.mart.lib.config.DatasetConfig) {
if (child instanceof org.ensembl.mart.lib.config.FilterPage) {
config = (DatasetConfig) parentNode.getUserObject();
config.insertFilterPage(objIndex, (FilterPage) editingNode.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.AttributePage) {
config = (DatasetConfig) parentNode.getUserObject();
config.insertAttributePage(objIndex, (AttributePage) editingNode.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.Importable) {
config = (DatasetConfig) parentNode.getUserObject();
config.insertImportable(objIndex, (Importable) editingNode.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.Exportable) {
config = (DatasetConfig) parentNode.getUserObject();
config.insertExportable(objIndex, (Exportable) editingNode.getUserObject());
} else {
String error_string = "Error: " + childName + " cannot be inserted in a DatasetConfig.";
return error_string;
}
} else if (parent instanceof org.ensembl.mart.lib.config.FilterPage) {
if (child instanceof org.ensembl.mart.lib.config.FilterGroup) {
FilterPage fp = (FilterPage) parentNode.getUserObject();
fp.insertFilterGroup(objIndex, (FilterGroup) editingNode.getUserObject());
} else {
String error_string = "Error: " + childName + " cannot be inserted in a FilterPage.";
return error_string;
}
} else if (parent instanceof org.ensembl.mart.lib.config.FilterGroup) {
if (child instanceof org.ensembl.mart.lib.config.FilterCollection) {
FilterGroup fg = (FilterGroup) parentNode.getUserObject();
fg.insertFilterCollection(objIndex, (FilterCollection) editingNode.getUserObject());
} else {
String error_string = "Error: " + childName + " cannot be inserted in a FilterGroup.";
return error_string;
}
} else if (parent instanceof org.ensembl.mart.lib.config.FilterCollection) {
if (child instanceof org.ensembl.mart.lib.config.FilterDescription) {
FilterCollection fc = (FilterCollection) parentNode.getUserObject();
fc.insertFilterDescription(objIndex, (FilterDescription) editingNode.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.Option) {
FilterCollection fc = (FilterCollection) parentNode.getUserObject();
FilterDescription fdConvert = new FilterDescription((Option) editingNode.getUserObject());
fc.insertFilterDescription(objIndex, fdConvert);
editingNode.setUserObject(fdConvert);
} else if (child instanceof org.ensembl.mart.lib.config.AttributeDescription) {
FilterCollection fc = (FilterCollection) parentNode.getUserObject();
// FilterDescription fdConvert = new FilterDescription((AttributeDescription)
// editingNode.getUserObject());
AttributeDescription ad = (AttributeDescription) editingNode.getUserObject();
FilterDescription fdConvert = null;
try {
fdConvert =
new FilterDescription(
ad.getInternalName(),
ad.getField(),
"text",
"=",
"=",
ad.getDisplayName(),
ad.getTableConstraint(),
ad.getKey(),
ad.getDescription(),
"",
"",
"",
"",
"",
"",
"",
"",
"",
"",
"",
"",
"",
"",
"",
"",
"",
"",
"",
"");
} catch (ConfigurationException e) {
// guaranteed internal name for atts
}
fc.insertFilterDescription(objIndex, fdConvert);
editingNode.setUserObject(fdConvert);
} else {
String error_string = "Error: " + childName + " cannot be inserted in a FilterCollection.";
return error_string;
}
} else if (parent instanceof org.ensembl.mart.lib.config.FilterDescription) {
if (child instanceof org.ensembl.mart.lib.config.SpecificFilterContent) {
FilterDescription ad = (FilterDescription) parentNode.getUserObject();
ad.insertSpecificFilterContent(
objIndex, (SpecificFilterContent) editingNode.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.FilterDescription) {
FilterDescription fd = (FilterDescription) parentNode.getUserObject();
Option opConvert = new Option((FilterDescription) editingNode.getUserObject());
fd.insertOption(objIndex, opConvert);
editingNode.setUserObject(opConvert);
} else if (child instanceof org.ensembl.mart.lib.config.Option) {
FilterDescription fd = (FilterDescription) parentNode.getUserObject();
fd.insertOption(objIndex, (Option) editingNode.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.PushAction) {
FilterDescription fd = (FilterDescription) parentNode.getUserObject();
// fd.insertPushAction(objIndex, (PushAction) editingNode.getUserObject());
} else {
String error_string = "Error: " + childName + " cannot be inserted in a FilterDescription.";
return error_string;
}
} else if (parent instanceof org.ensembl.mart.lib.config.Option) {
if (child instanceof org.ensembl.mart.lib.config.SpecificOptionContent) {
Option ad = (Option) parentNode.getUserObject();
ad.insertSpecificOptionContent(
objIndex, (SpecificOptionContent) editingNode.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.PushAction) {
Option op = (Option) parentNode.getUserObject();
op.insertPushAction(objIndex, (PushAction) editingNode.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.Option) {
Option op = (Option) parentNode.getUserObject();
op.insertOption(objIndex, (Option) editingNode.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.PushAction) {
if (child instanceof org.ensembl.mart.lib.config.Option) {
PushAction pa = (PushAction) parentNode.getUserObject();
pa.insertOption(objIndex, (Option) editingNode.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.AttributePage) {
if (child instanceof org.ensembl.mart.lib.config.AttributeGroup) {
AttributePage ap = (AttributePage) parentNode.getUserObject();
ap.insertAttributeGroup(objIndex, (AttributeGroup) editingNode.getUserObject());
} else {
String error_string = "Error: " + childName + " cannot be inserted in an AttributePage.";
return error_string;
}
} else if (parent instanceof org.ensembl.mart.lib.config.AttributeGroup) {
if (child instanceof org.ensembl.mart.lib.config.AttributeCollection) {
AttributeGroup ag = (AttributeGroup) parentNode.getUserObject();
ag.insertAttributeCollection(objIndex, (AttributeCollection) editingNode.getUserObject());
} else {
String error_string = "Error: " + childName + " cannot be inserted in an AttributeGroup.";
return error_string;
}
} else if (parent instanceof org.ensembl.mart.lib.config.AttributeCollection) {
if (child instanceof org.ensembl.mart.lib.config.AttributeDescription) {
AttributeCollection ac = (AttributeCollection) parentNode.getUserObject();
ac.insertAttributeDescription(objIndex, (AttributeDescription) editingNode.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.AttributeList) {
AttributeCollection ac = (AttributeCollection) parentNode.getUserObject();
ac.insertAttributeList(objIndex, (AttributeList) editingNode.getUserObject());
} else {
String error_string =
"Error: " + childName + " cannot be inserted in an AttributeCollection.";
return error_string;
}
} else if (parent instanceof org.ensembl.mart.lib.config.AttributeDescription) {
if (child instanceof org.ensembl.mart.lib.config.SpecificAttributeContent) {
AttributeDescription ad = (AttributeDescription) parentNode.getUserObject();
ad.insertSpecificAttributeContent(
objIndex, (SpecificAttributeContent) editingNode.getUserObject());
} else {
String error_string = "Error: " + childName + " cannot be inserted in a FilterDescription.";
return error_string;
}
} else if (parent instanceof org.ensembl.mart.lib.config.SpecificFilterContent) {
if (child instanceof org.ensembl.mart.lib.config.Option) {
SpecificFilterContent fd = (SpecificFilterContent) parentNode.getUserObject();
System.out.println(
"TREE MODEL 2 -- ADDING DYN OPTION "
+ ((Option) editingNode.getUserObject()).getInternalName());
fd.insertOption(objIndex, (Option) editingNode.getUserObject());
} else {
String error_string =
"Error: " + childName + " cannot be inserted in an DynamicFilterContent.";
return error_string;
}
} else if (parent instanceof org.ensembl.mart.lib.config.SpecificAttributeContent) {
String error_string =
"Error: " + childName + " cannot be inserted in an DynamicAttributeContent.";
return error_string;
} else if (parent instanceof org.ensembl.mart.lib.config.SpecificOptionContent) {
String error_string =
"Error: " + childName + " cannot be inserted in an DynamicOptionContent.";
return error_string;
}
super.insertNodeInto(editingNode, parentNode, index);
return "success";
}