public void openProfiles_old() {
String saltData = "";
try {
if (System.getProperty("saltData") != null) {
saltData = System.getProperty("saltData");
}
StringTokenizer fileTokens = new StringTokenizer(saltData, ",");
while (fileTokens.hasMoreElements()) {
String file = fileTokens.nextToken();
if (file != null && !file.equals("null") && !file.equals("")) {
System.out.println("Built tab from list" + file);
buildProfileTab(file);
}
}
saltData = "";
} catch (Exception e) {
System.out.println("Failed to open files ");
}
// just incase it was a signle node
if (saltData != null && !saltData.equals("null") && !saltData.equals("")) {
System.out.println("Built tab from single " + saltData);
buildProfileTab(saltData);
}
System.setProperty("saltData", "");
}
public ArrayList parseData(String propName) {
ArrayList<String> files = new ArrayList();
String saltData = "";
try {
if (System.getProperty(propName) != null) {
saltData = System.getProperty(propName);
}
StringTokenizer fileTokens = new StringTokenizer(saltData, ",");
while (fileTokens.hasMoreElements()) {
String file = fileTokens.nextToken();
if (file != null && !file.equals("null") && !file.equals("")) {
System.out.println("Built tab from list" + file);
files.add(file);
}
}
saltData = "";
} catch (Exception e) {
System.out.println("Failed to open files ");
}
// just incase it was a signle node
if (saltData != null && !saltData.equals("null") && !saltData.equals("")) {
System.out.println("Built tab from single " + saltData);
files.add(saltData);
}
System.setProperty(propName, "");
return files;
}
public List getCategories() {
List concepts = null;
try {
// GetReturnType request = new GetReturnType();
// request.setType("limited");
GetCategoriesType request = new GetCategoriesType();
request.setType("core");
request.setHiddens(false);
request.setSynonyms(false);
OntologyResponseMessage msg = new OntologyResponseMessage();
StatusType procStatus = null;
while (procStatus == null || !procStatus.getType().equals("DONE")) {
String response = OntServiceDriver.getCategories(request, "FIND");
procStatus = msg.processResult(response);
// if other error codes
// TABLE_ACCESS_DENIED and USER_INVALID, DATABASE ERROR
if (procStatus.getType().equals("ERROR")) {
System.setProperty("errorMessage", procStatus.getValue());
return concepts;
}
procStatus.setType("DONE");
}
ConceptsType allConcepts = msg.doReadConcepts();
if (allConcepts != null) concepts = allConcepts.getConcept();
} catch (AxisFault e) {
log.error(e.getMessage());
System.setProperty("errorMessage", "Ontology cell unavailable");
} catch (I2B2Exception e) {
log.error(e.getMessage());
System.setProperty("errorMessage", e.getMessage());
} catch (Exception e) {
log.error(e.getMessage());
System.setProperty("errorMessage", "Remote server unavailable");
}
return concepts;
}
static {
System.setProperty("apple.awt.usingSWT", "true");
}