public ExtSed interpolate(ExtSed sed, InterpolationConfig interpConf) throws Exception {
if (sed.getNumberOfSegments() == 0) {
throw new SedNoDataException();
}
ExtSed newsed = ExtSed.flatten(sed, "Angstrom", "Jy");
String intervUnits = interpConf.getUnits();
Double xmin = interpConf.getXMin();
Double xmax = interpConf.getXMax();
if (xmin > Double.NEGATIVE_INFINITY)
xmin = um.convertX(new double[] {xmin}, intervUnits, "Angstrom")[0];
if (xmax < Double.POSITIVE_INFINITY)
xmax = um.convertX(new double[] {xmax}, intervUnits, "Angstrom")[0];
interpConf.setXMin(Math.min(xmin, xmax));
interpConf.setXMax(Math.max(xmin, xmax));
interpConf.setX(newsed.getSegment(0).getSpectralAxisValues());
interpConf.setY(newsed.getSegment(0).getFluxAxisValues());
SAMPMessage message =
SAMPFactory.createMessage(INTERPOLATE_MTYPE, interpConf, InterpolationPayload.class);
Response rspns = client.sendMessage(message);
InterpolationPayload response =
(InterpolationPayload) SAMPFactory.get(rspns.getResult(), InterpolationPayload.class);
if (xmin > Double.NEGATIVE_INFINITY)
xmin = um.convertX(new double[] {xmin}, "Angstrom", intervUnits)[0];
if (xmax < Double.POSITIVE_INFINITY)
xmax = um.convertX(new double[] {xmax}, "Angstrom", intervUnits)[0];
interpConf.setXMin(Math.min(xmin, xmax));
interpConf.setXMax(Math.max(xmin, xmax));
double[] x = um.convertX(response.getX(), "Angstrom", intervUnits);
Segment segment = new Segment();
segment.setSpectralAxisValues(x);
segment.setFluxAxisValues(response.getY());
segment.setTarget(sed.getSegment(0).getTarget());
segment.setSpectralAxisUnits(intervUnits);
segment.setFluxAxisUnits("Jy");
String ucd = "em.wl";
if (intervUnits.equals("Hz")) ucd = "em.freq";
else if (intervUnits.equals("keV")) ucd = "em.energy";
segment.createChar().createSpectralAxis().setUcd(ucd);
segment.createChar().createFluxAxis().setUcd("phot.flux.density;" + ucd);
ExtSed newSed = manager.newSed(sed.getId() + "_" + interpConf.getMethod().replaceAll(" ", ""));
newSed.addSegment(segment);
newSed.checkChar();
return newSed;
}
@Test
public void testStackAvg() throws Exception {
payload = (SedStackerStackPayload) SAMPFactory.get(SedStackerStackPayload.class);
// Setup the stack payload
payload.addSegment(segment1);
payload.addSegment(segment2);
payload.addSegment(segment3);
payload.setBinsize(2.0);
payload.setLogBin(false);
payload.setSmooth(false);
payload.setSmoothBinsize(5.0);
payload.setStatistic("avg");
// Setup and send SAMP message
SAMPMessage message =
SAMPFactory.createMessage("stack.stack", payload, SedStackerStackPayload.class);
Response rspns = client.sendMessage(message);
SedStackerStackPayload response =
(SedStackerStackPayload) SAMPFactory.get(rspns.getResult(), SedStackerStackPayload.class);
// get response values
SegmentPayload seg = response.getSegments().get(0);
double[] controlY =
new double[] {5.0, 5.36666667, 4.5, 2.66666667, 4.0, 6.5, 1.5, 10.5, 5.0, 10.0};
double[] controlX = new double[] {0., 2., 4., 6., 8., 10., 16., 22., 50., 100.};
// double[] controlYerr = new double[] {0.5, 0.501120965, 0.3640055,
// 0.18104634, 0.4, 0.48102899, 0.15, 1.05, 0.5, 1.0}; // calculated
// from errors [sqrt(sum(errors^2))/N]
double[] controlYerr =
new double[] {0, 6.82169741, 2.5, 1.64991582, 0., 5.21216526, 0., 0., 0., 0.}; // calculated
// from
// stddev(flux)
double[] controlCounts = new double[] {1, 3, 2, 3, 1, 3, 1, 1, 1, 1};
assertEquals(response.getSegments().size(), 1);
// tests
for (int i = 0; i < seg.getY().length; i++) {
assertEquals(controlY[i], seg.getY()[i], EPSILON);
}
for (int i = 0; i < seg.getY().length; i++) {
assertEquals(controlX[i], seg.getX()[i], EPSILON);
}
for (int i = 0; i < seg.getY().length; i++) {
assertEquals(controlYerr[i], seg.getYerr()[i], EPSILON);
}
for (int i = 0; i < seg.getY().length; i++) {
assertEquals(controlCounts[i], seg.getCounts()[i], EPSILON);
}
}
@Test
public void testNormalize() throws Exception {
payload = (SedStackerNormalizePayload) SAMPFactory.get(SedStackerNormalizePayload.class);
// Setup the normalization payload
payload.addSegment(segment1);
payload.addSegment(segment2);
payload.addSegment(segment3);
payload.setNormOperator(0);
payload.setY0(1.0);
payload.setXmin("MIN");
payload.setXmax("MAX");
payload.setStats("avg");
payload.setIntegrate(Boolean.TRUE);
// Setup and send SAMP message
SAMPMessage message =
SAMPFactory.createMessage("stack.normalize", payload, SedStackerNormalizePayload.class);
Response rspns = client.sendMessage(message);
SedStackerNormalizePayload response =
(SedStackerNormalizePayload)
SAMPFactory.get(rspns.getResult(), SedStackerNormalizePayload.class);
// get response values
double[] resy1 = response.getSegments().get(0).getY();
double[] resy2 = response.getSegments().get(1).getY();
Double resnorm3 = response.getSegments().get(2).getNormConstant();
SegmentPayload seg1 = response.getSegments().get(0);
Double z = seg1.getZ();
Double norm = seg1.getNormConstant();
assertEquals(response.getSegments().size(), 3);
// tests
for (int i = 0; i < resy1.length; i++) {
assertEquals(0.49234923 * y1[i], resy1[i], EPSILON);
}
for (int i = 0; i < resy2.length; i++) {
assertEquals(9.846 * y2[i], resy2[i], EPSILON);
}
assertEquals(1.1529274, resnorm3, EPSILON);
}
protected SEDException getException(Response rspns) {
try {
String message = (String) rspns.getResult().get("message");
return new SEDException(message);
} catch (Exception ex) {
Logger.getLogger(SherpaClient.class.getName()).log(Level.SEVERE, null, ex);
return new SEDException(ex);
}
}
/** Does the work for the main method. */
public static int runMain(String[] args) {
String usage =
new StringBuffer()
.append("\n Usage:")
.append("\n ")
.append(HubMonitor.class.getName())
.append("\n ")
.append(" [-help]")
.append(" [+/-verbose]")
.append("\n ")
.append(" [-auto <secs>]")
.append(" [-nomsg]")
.append(" [-nogui]")
.append("\n ")
.append(" [-mtype <pattern>]")
.append("\n")
.toString();
List argList = new ArrayList(Arrays.asList(args));
int verbAdjust = 0;
boolean gui = true;
boolean trackMsgs = true;
int autoSec = 3;
Subscriptions subs = new Subscriptions();
for (Iterator it = argList.iterator(); it.hasNext(); ) {
String arg = (String) it.next();
if (arg.startsWith("-auto") && it.hasNext()) {
it.remove();
String sauto = (String) it.next();
it.remove();
autoSec = Integer.parseInt(sauto);
} else if (arg.equals("-gui")) {
it.remove();
gui = true;
} else if (arg.equals("-nogui")) {
it.remove();
gui = false;
} else if (arg.equals("-msg")) {
it.remove();
trackMsgs = true;
} else if (arg.equals("-nomsg")) {
it.remove();
trackMsgs = false;
} else if (arg.startsWith("-mtype") && it.hasNext()) {
it.remove();
String mpat = (String) it.next();
it.remove();
subs.addMType(mpat);
} else if (arg.startsWith("-v")) {
it.remove();
verbAdjust--;
} else if (arg.startsWith("+v")) {
it.remove();
verbAdjust++;
} else if (arg.startsWith("-h")) {
it.remove();
System.out.println(usage);
return 0;
} else {
it.remove();
System.err.println(usage);
return 1;
}
}
assert argList.isEmpty();
// Adjust logging in accordance with verboseness flags.
int logLevel = Level.WARNING.intValue() + 100 * verbAdjust;
Logger.getLogger("org.astrogrid.samp").setLevel(Level.parse(Integer.toString(logLevel)));
// Get profile.
final ClientProfile profile = DefaultClientProfile.getProfile();
// Create the HubMonitor.
final HubMonitor monitor = new HubMonitor(profile, trackMsgs, autoSec);
// Add a handler for extra MTypes if so requested.
if (!subs.isEmpty()) {
final Subscriptions extraSubs = subs;
HubConnector connector = monitor.getHubConnector();
final Response dummyResponse = new Response();
dummyResponse.setStatus(Response.WARNING_STATUS);
dummyResponse.setResult(new HashMap());
dummyResponse.setErrInfo(new ErrInfo("Message logged, " + "no other action taken"));
connector.addMessageHandler(
new MessageHandler() {
public Map getSubscriptions() {
return extraSubs;
}
public void receiveNotification(
HubConnection connection, String senderId, Message msg) {}
public void receiveCall(
HubConnection connection, String senderId, String msgId, Message msg)
throws SampException {
connection.reply(msgId, dummyResponse);
}
});
connector.declareSubscriptions(connector.computeSubscriptions());
}
// Start the gui in a new window.
final boolean isVisible = gui;
SwingUtilities.invokeLater(
new Runnable() {
public void run() {
JFrame frame = new JFrame("SAMP HubMonitor");
frame.getContentPane().add(monitor);
frame.setIconImage(
new ImageIcon(Metadata.class.getResource("images/eye.gif")).getImage());
frame.pack();
frame.setVisible(isVisible);
frame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
}
});
return 0;
}
protected boolean isException(Response rspns) {
return !rspns.isOK();
}
public void receiveCall(String senderId, String msgId, Message msg) throws SampException {
receiveNotification(senderId, msg);
connection_.reply(msgId, Response.createSuccessResponse(new HashMap()));
}