/** Run a single test of any sort, return true if the test succeeds. */
public boolean doRunTest(Resource test) throws IOException {
if (test.hasProperty(RDF.type, OWLTest.PositiveEntailmentTest)
|| test.hasProperty(RDF.type, OWLTest.NegativeEntailmentTest)
|| test.hasProperty(RDF.type, OWLTest.OWLforOWLTest)
|| test.hasProperty(RDF.type, OWLTest.ImportEntailmentTest)
|| test.hasProperty(RDF.type, OWLTest.TrueTest)) {
// Entailment tests
boolean processImports = test.hasProperty(RDF.type, OWLTest.ImportEntailmentTest);
Model premises = getDoc(test, RDFTest.premiseDocument, processImports);
Model conclusions = getDoc(test, RDFTest.conclusionDocument);
comprehensionAxioms(premises, conclusions);
long t1 = System.currentTimeMillis();
InfGraph graph = reasoner.bind(premises.getGraph());
if (printProfile) {
((FBRuleInfGraph) graph).resetLPProfile(true);
}
Model result = ModelFactory.createModelForGraph(graph);
boolean correct = WGReasonerTester.testConclusions(conclusions.getGraph(), result.getGraph());
long t2 = System.currentTimeMillis();
lastTestDuration = t2 - t1;
if (printProfile) {
((FBRuleInfGraph) graph).printLPProfile();
}
if (test.hasProperty(RDF.type, OWLTest.NegativeEntailmentTest)) {
correct = !correct;
}
return correct;
} else if (test.hasProperty(RDF.type, OWLTest.InconsistencyTest)) {
// System.out.println("Starting: " + test);
Model input = getDoc(test, RDFTest.inputDocument);
long t1 = System.currentTimeMillis();
InfGraph graph = reasoner.bind(input.getGraph());
boolean correct = !graph.validate().isValid();
long t2 = System.currentTimeMillis();
lastTestDuration = t2 - t1;
return correct;
} else if (test.hasProperty(RDF.type, OWLTest.ConsistencyTest)) {
// Not used normally becase we are not complete enough to prove consistency
// System.out.println("Starting: " + test);
Model input = getDoc(test, RDFTest.inputDocument);
long t1 = System.currentTimeMillis();
InfGraph graph = reasoner.bind(input.getGraph());
boolean correct = graph.validate().isValid();
long t2 = System.currentTimeMillis();
lastTestDuration = t2 - t1;
return correct;
} else {
for (StmtIterator i = test.listProperties(RDF.type); i.hasNext(); ) {
System.out.println("Test type = " + i.nextStatement().getObject());
}
throw new ReasonerException("Unknown test type");
}
}
/** Initialize the result model. */
public void initResults() {
testResults = ModelFactory.createDefaultModel();
jena2 = testResults.createResource(BASE_RESULTS_URI + "#jena2");
jena2.addProperty(
RDFS.comment,
testResults.createLiteral(
"<a xmlns=\"http://www.w3.org/1999/xhtml\" href=\"http://jena.sourceforce.net/\">Jena2</a> includes a rule-based inference engine for RDF processing, "
+ "supporting both forward and backward chaining rules. Its OWL rule set is designed to provide sound "
+ "but not complete instance resasoning for that fragment of OWL/Full limited to the OWL/lite vocabulary. In"
+ "particular it does not support unionOf/complementOf.",
true));
jena2.addProperty(RDFS.label, "Jena2");
testResults.setNsPrefix("results", OWLResults.NS);
}
/** Return a list of all tests of the given type, according to the current filters */
public List<Resource> findTestsOfType(Resource testType) {
ArrayList<Resource> result = new ArrayList<>();
StmtIterator si = testDefinitions.listStatements(null, RDF.type, testType);
while (si.hasNext()) {
Resource test = si.nextStatement().getSubject();
boolean accept = true;
// Check test status
Literal status = (Literal) test.getProperty(RDFTest.status).getObject();
if (approvedOnly) {
accept = status.getString().equals(STATUS_FLAGS[0]);
} else {
accept = false;
for (String STATUS_FLAG : STATUS_FLAGS) {
if (status.getString().equals(STATUS_FLAG)) {
accept = true;
break;
}
}
}
// Check for blocked tests
for (String BLOCKED_TEST : BLOCKED_TESTS) {
if (BLOCKED_TEST.equals(test.toString())) {
accept = false;
}
}
// End of filter tests
if (accept) {
result.add(test);
}
}
return result;
}
/**
* Example the conclusions graph for introduction of restrictions which require a comprehension
* rewrite and declare new (anon) classes for those restrictions.
*/
public void comprehensionAxioms(Model premises, Model conclusions) {
// Comprehend all restriction declarations and note them in a map
Map<Resource, Resource> comprehension = new HashMap<>();
StmtIterator ri = conclusions.listStatements(null, RDF.type, OWL.Restriction);
while (ri.hasNext()) {
Resource restriction = ri.nextStatement().getSubject();
StmtIterator pi = restriction.listProperties(OWL.onProperty);
while (pi.hasNext()) {
Resource prop = (Resource) pi.nextStatement().getObject();
StmtIterator vi = restriction.listProperties();
while (vi.hasNext()) {
Statement rs = vi.nextStatement();
if (!rs.getPredicate().equals(OWL.onProperty)) {
// Have a restriction on(prop) of type rs in the conclusions
// So assert a premise that such a restriction could exisit
Resource comp =
premises
.createResource()
.addProperty(RDF.type, OWL.Restriction)
.addProperty(OWL.onProperty, prop)
.addProperty(rs.getPredicate(), rs.getObject());
comprehension.put(restriction, comp);
}
}
}
}
// Comprehend any intersectionOf lists. Introduce anon class which has the form
// of the intersection expression.
// Rewrite queries of the form (X intersectionOf Y) to the form
// (X equivalentClass ?CC) (?CC intersectionOf Y)
StmtIterator ii = conclusions.listStatements(null, OWL.intersectionOf, (RDFNode) null);
List<Statement> intersections = new ArrayList<>();
while (ii.hasNext()) {
intersections.add(ii.nextStatement());
}
for (Statement is : intersections) {
// Declare in the premises that such an intersection exists
Resource comp =
premises
.createResource()
.addProperty(RDF.type, OWL.Class)
.addProperty(
OWL.intersectionOf, mapList(premises, (Resource) is.getObject(), comprehension));
// Rewrite the conclusions to be a test for equivalence between the class being
// queried and the comprehended interesection
conclusions.remove(is);
conclusions.add(is.getSubject(), OWL.equivalentClass, comp);
}
// Comprehend any oneOf lists
StmtIterator io = conclusions.listStatements(null, OWL.oneOf, (RDFNode) null);
while (io.hasNext()) {
Statement s = io.nextStatement();
Resource comp = premises.createResource().addProperty(OWL.oneOf, s.getObject());
}
}
public static void main(String args[]) {
OntModel m = ModelFactory.createOntologyModel();
OntDocumentManager dm = m.getDocumentManager();
dm.addAltEntry(
"http://www.eswc2006.org/technologies/ontology",
"file:" + JENA + "src/examples/resources/eswc-2006-09-21.rdf");
m.read("http://www.eswc2006.org/technologies/ontology");
// create an empty model
Model model = ModelFactory.createDefaultModel();
// create the resource
Resource johnSmith = model.createResource(personURI);
// add the property
johnSmith.addProperty(VCARD.FN, fullName);
johnSmith.addProperty(
VCARD.N,
model.createResource().addProperty(VCARD.Given, "jon").addProperty(VCARD.Family, "Smit"));
// list the statements in the Model
StmtIterator iter = model.listStatements();
// print out the predicate, subject and object of each statement
while (iter.hasNext()) {
Statement stmt = iter.nextStatement(); // get next statement
Resource subject = stmt.getSubject(); // get the subject
Property predicate = stmt.getPredicate(); // get the predicate
RDFNode object = stmt.getObject(); // get the object
System.out.print(subject.toString());
System.out.print(" " + predicate.toString() + " ");
if (object instanceof Resource) {
System.out.print(object.toString());
} else {
// object is a literal
System.out.print(" \"" + object.toString() + "\"");
}
System.out.println(" .");
}
}
/**
* Helper. Adds to the target model a translation of the given RDF list with each element replaced
* according to the map.
*/
private Resource mapList(Model target, Resource list, Map<Resource, Resource> map) {
if (list.equals(RDF.nil)) {
return RDF.nil;
} else {
Resource head = (Resource) list.getRequiredProperty(RDF.first).getObject();
Resource rest = (Resource) list.getRequiredProperty(RDF.rest).getObject();
Resource mapElt = target.createResource();
Resource mapHead = map.get(head);
if (mapHead == null) mapHead = head;
mapElt.addProperty(RDF.first, mapHead);
mapElt.addProperty(RDF.rest, mapList(target, rest, map));
return mapElt;
}
}
/**
* Utility to load a file into a model a Model. Files are assumed to be relative to the BASE_URI.
*
* @param file the file name, relative to baseDir
* @return the loaded Model
*/
public static Model loadFile(String file, Model model) throws IOException {
String langType = "RDF/XML";
if (file.endsWith(".nt")) {
langType = "N-TRIPLE";
} else if (file.endsWith("n3")) {
langType = "N3";
}
String fname = file;
if (fname.startsWith(BASE_URI)) {
fname = fname.substring(BASE_URI.length());
}
Reader reader = new BufferedReader(new FileReader(BASE_TESTDIR + fname));
model.read(reader, BASE_URI + fname, langType);
return model;
}
/** Load all of the known manifest files into a single model */
public static Model loadAllTestDefinitions() {
System.out.print("Loading manifests ");
System.out.flush();
Model testDefs = ModelFactory.createDefaultModel();
int count = 0;
for (String TEST_DIR : TEST_DIRS) {
File dir = new File(BASE_TESTDIR + TEST_DIR);
String[] manifests =
dir.list(
new FilenameFilter() {
@Override
public boolean accept(File df, String name) {
if (name.startsWith("Manifest") && name.endsWith(".rdf")) {
return includeModified || !name.endsWith("-mod.rdf");
} else {
return false;
}
}
});
for (String manifest : manifests) {
File mf = new File(dir, manifest);
try {
testDefs.read(new FileInputStream(mf), "file:" + mf);
count++;
if (count % 8 == 0) {
System.out.print(".");
System.out.flush();
}
} catch (FileNotFoundException e) {
System.out.println("File not readable - " + e);
}
}
}
System.out.println("loaded");
return testDefs;
}
/** Run a single test of any sort, performing any appropriate logging and error reporting. */
public void runTest(Resource test) {
System.out.println("Running " + test);
boolean success = false;
boolean fail = false;
try {
success = doRunTest(test);
} catch (Exception e) {
fail = true;
System.out.print("\nException: " + e);
e.printStackTrace();
}
testCount++;
if (success) {
System.out.print((testCount % 40 == 0) ? ".\n" : ".");
System.out.flush();
passCount++;
} else {
System.out.println("\nFAIL: " + test);
}
Resource resultType = null;
if (fail) {
resultType = OWLResults.FailingRun;
} else {
if (test.hasProperty(RDF.type, OWLTest.NegativeEntailmentTest)
|| test.hasProperty(RDF.type, OWLTest.ConsistencyTest)) {
resultType = success ? OWLResults.PassingRun : OWLResults.FailingRun;
} else {
resultType = success ? OWLResults.PassingRun : OWLResults.IncompleteRun;
}
}
// log to the rdf result format
Resource result =
testResults
.createResource()
.addProperty(RDF.type, OWLResults.TestRun)
.addProperty(RDF.type, resultType)
.addProperty(OWLResults.test, test)
.addProperty(OWLResults.system, jena2);
}
/** Run a single test of any sort, performing any appropriate logging and error reporting. */
public void runTest(String test) {
runTest(testDefinitions.getResource(test));
}