/** {@inheritDoc} */
  public void updateBlock(Block oldblock, Block newblock) throws IOException {
    if (oldblock.getBlockId() != newblock.getBlockId()) {
      throw new IOException(
          "Cannot update oldblock (=" + oldblock + ") to newblock (=" + newblock + ").");
    }

    for (; ; ) {
      final List<Thread> threads = tryUpdateBlock(oldblock, newblock);
      if (threads == null) {
        return;
      }

      // interrupt and wait for all ongoing create threads
      for (Thread t : threads) {
        t.interrupt();
      }
      for (Thread t : threads) {
        try {
          t.join();
        } catch (InterruptedException e) {
          DataNode.LOG.warn("interruptOngoingCreates: t=" + t, e);
        }
      }
    }
  }
 ActiveFile(File f, List<Thread> list) {
   file = f;
   if (list != null) {
     threads.addAll(list);
   }
   threads.add(Thread.currentThread());
 }
Exemplo n.º 3
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  public static LinkedHashSet<String> findJars(LogicalPlan dag, Class<?>[] defaultClasses) {
    List<Class<?>> jarClasses = new ArrayList<Class<?>>();

    for (String className : dag.getClassNames()) {
      try {
        Class<?> clazz = Thread.currentThread().getContextClassLoader().loadClass(className);
        jarClasses.add(clazz);
      } catch (ClassNotFoundException e) {
        throw new IllegalArgumentException("Failed to load class " + className, e);
      }
    }

    for (Class<?> clazz : Lists.newArrayList(jarClasses)) {
      // process class and super classes (super does not require deploy annotation)
      for (Class<?> c = clazz; c != Object.class && c != null; c = c.getSuperclass()) {
        // LOG.debug("checking " + c);
        jarClasses.add(c);
        jarClasses.addAll(Arrays.asList(c.getInterfaces()));
      }
    }

    jarClasses.addAll(Arrays.asList(defaultClasses));

    if (dag.isDebug()) {
      LOG.debug("Deploy dependencies: {}", jarClasses);
    }

    LinkedHashSet<String> localJarFiles = new LinkedHashSet<String>(); // avoid duplicates
    HashMap<String, String> sourceToJar = new HashMap<String, String>();

    for (Class<?> jarClass : jarClasses) {
      if (jarClass.getProtectionDomain().getCodeSource() == null) {
        // system class
        continue;
      }
      String sourceLocation =
          jarClass.getProtectionDomain().getCodeSource().getLocation().toString();
      String jar = sourceToJar.get(sourceLocation);
      if (jar == null) {
        // don't create jar file from folders multiple times
        jar = JarFinder.getJar(jarClass);
        sourceToJar.put(sourceLocation, jar);
        LOG.debug("added sourceLocation {} as {}", sourceLocation, jar);
      }
      if (jar == null) {
        throw new AssertionError("Cannot resolve jar file for " + jarClass);
      }
      localJarFiles.add(jar);
    }

    String libJarsPath = dag.getValue(LogicalPlan.LIBRARY_JARS);
    if (!StringUtils.isEmpty(libJarsPath)) {
      String[] libJars = StringUtils.splitByWholeSeparator(libJarsPath, LIB_JARS_SEP);
      localJarFiles.addAll(Arrays.asList(libJars));
    }

    LOG.info("Local jar file dependencies: " + localJarFiles);

    return localJarFiles;
  }
Exemplo n.º 4
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 private static void ignoreAndWait(final Exception e, boolean printException) {
   H2O.ignore(e, "Hit HDFS reset problem, retrying...", printException);
   try {
     Thread.sleep(500);
   } catch (InterruptedException ie) {
   }
 }
Exemplo n.º 5
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    /**
     * The run method lives for the life of the JobTracker, and removes Jobs that are not still
     * running, but which finished a long time ago.
     */
    public void run() {
      while (shouldRun) {
        try {
          Thread.sleep(RETIRE_JOB_CHECK_INTERVAL);
        } catch (InterruptedException ie) {
        }

        synchronized (jobs) {
          synchronized (jobInitQueue) {
            synchronized (jobsByArrival) {
              for (Iterator it = jobs.keySet().iterator(); it.hasNext(); ) {
                String jobid = (String) it.next();
                JobInProgress job = (JobInProgress) jobs.get(jobid);

                if (job.getStatus().getRunState() != JobStatus.RUNNING
                    && job.getStatus().getRunState() != JobStatus.PREP
                    && (job.getFinishTime() + RETIRE_JOB_INTERVAL < System.currentTimeMillis())) {
                  it.remove();

                  jobInitQueue.remove(job);
                  jobsByArrival.remove(job);
                }
              }
            }
          }
        }
      }
    }
Exemplo n.º 6
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  /*
   * Fetch a file that is in a Hadoop file system. Return a local File.
   * Interruptible.
   */
  private File hdfsFetch(Path fromPath, Reporter reporter)
      throws IOException, InterruptedException {
    UUID uniqueId = UUID.randomUUID();
    File toFile = new File(tempDir, uniqueId.toString() + "/" + fromPath.getName());
    File toDir = new File(toFile.getParent());
    if (toDir.exists()) {
      FileUtils.deleteDirectory(toDir);
    }
    toDir.mkdirs();
    Path toPath = new Path(toFile.getCanonicalPath());

    FileSystem fS = fromPath.getFileSystem(hadoopConf);
    FileSystem tofS = FileSystem.getLocal(hadoopConf);

    Throttler throttler = new Throttler((double) bytesPerSecThrottle);
    try {
      for (FileStatus fStatus : fS.globStatus(fromPath)) {
        log.info("Copying " + fStatus.getPath() + " to " + toPath);
        long bytesSoFar = 0;

        FSDataInputStream iS = fS.open(fStatus.getPath());
        FSDataOutputStream oS = tofS.create(toPath);

        byte[] buffer = new byte[downloadBufferSize];

        int nRead;
        while ((nRead = iS.read(buffer, 0, buffer.length)) != -1) {
          // Needed to being able to be interrupted at any moment.
          if (Thread.interrupted()) {
            iS.close();
            oS.close();
            cleanDirNoExceptions(toDir);
            throw new InterruptedException();
          }
          bytesSoFar += nRead;
          oS.write(buffer, 0, nRead);
          throttler.incrementAndThrottle(nRead);
          if (bytesSoFar >= bytesToReportProgress) {
            reporter.progress(bytesSoFar);
            bytesSoFar = 0l;
          }
        }

        if (reporter != null) {
          reporter.progress(bytesSoFar);
        }

        oS.close();
        iS.close();
      }

      return toDir;
    } catch (ClosedByInterruptException e) {
      // This can be thrown by the method read.
      cleanDirNoExceptions(toDir);
      throw new InterruptedIOException();
    }
  }
Exemplo n.º 7
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 private static void deleteCache(Configuration conf, MRAsyncDiskService asyncDiskService)
     throws IOException {
   List<CacheStatus> deleteSet = new LinkedList<CacheStatus>();
   // try deleting cache Status with refcount of zero
   synchronized (cachedArchives) {
     for (Iterator<String> it = cachedArchives.keySet().iterator(); it.hasNext(); ) {
       String cacheId = (String) it.next();
       CacheStatus lcacheStatus = cachedArchives.get(cacheId);
       if (lcacheStatus.refcount == 0) {
         // delete this cache entry from the global list
         // and mark the localized file for deletion
         deleteSet.add(lcacheStatus);
         it.remove();
       }
     }
   }
   // do the deletion asynchronously, after releasing the global lock
   Thread cacheFileCleaner =
       new Thread(new CacheFileCleanTask(asyncDiskService, FileSystem.getLocal(conf), deleteSet));
   cacheFileCleaner.start();
 }
Exemplo n.º 8
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 public static InputStream openStream(Key k, ProgressMonitor pmon) throws IOException {
   H2OHdfsInputStream res = null;
   Path p = new Path(k.toString());
   try {
     res = new H2OHdfsInputStream(p, 0, pmon);
   } catch (IOException e) {
     try {
       Thread.sleep(1000);
     } catch (Exception ex) {
     }
     Log.warn("Error while opening HDFS key " + k.toString() + ", will wait and retry.");
     res = new H2OHdfsInputStream(p, 0, pmon);
   }
   return res;
 }
Exemplo n.º 9
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    /**
     * The run method lives for the life of the JobTracker, and removes TaskTrackers that have not
     * checked in for some time.
     */
    public void run() {
      while (shouldRun) {
        //
        // Thread runs periodically to check whether trackers should be expired.
        // The sleep interval must be no more than half the maximum expiry time
        // for a task tracker.
        //
        try {
          Thread.sleep(TASKTRACKER_EXPIRY_INTERVAL / 3);
        } catch (InterruptedException ie) {
        }

        //
        // Loop through all expired items in the queue
        //
        synchronized (taskTrackers) {
          synchronized (trackerExpiryQueue) {
            long now = System.currentTimeMillis();
            TaskTrackerStatus leastRecent = null;
            while ((trackerExpiryQueue.size() > 0)
                && ((leastRecent = (TaskTrackerStatus) trackerExpiryQueue.first()) != null)
                && (now - leastRecent.getLastSeen() > TASKTRACKER_EXPIRY_INTERVAL)) {

              // Remove profile from head of queue
              trackerExpiryQueue.remove(leastRecent);
              String trackerName = leastRecent.getTrackerName();

              // Figure out if last-seen time should be updated, or if tracker is dead
              TaskTrackerStatus newProfile =
                  (TaskTrackerStatus) taskTrackers.get(leastRecent.getTrackerName());
              // Items might leave the taskTracker set through other means; the
              // status stored in 'taskTrackers' might be null, which means the
              // tracker has already been destroyed.
              if (newProfile != null) {
                if (now - newProfile.getLastSeen() > TASKTRACKER_EXPIRY_INTERVAL) {
                  // Remove completely
                  updateTaskTrackerStatus(trackerName, null);
                  lostTaskTracker(leastRecent.getTrackerName());
                } else {
                  // Update time by inserting latest profile
                  trackerExpiryQueue.add(newProfile);
                }
              }
            }
          }
        }
      }
    }
Exemplo n.º 10
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 public static void startTracker(Configuration conf) throws IOException {
   if (tracker != null) throw new IOException("JobTracker already running.");
   while (true) {
     try {
       tracker = new JobTracker(conf);
       break;
     } catch (IOException e) {
       LOG.log(Level.WARNING, "Starting tracker", e);
     }
     try {
       Thread.sleep(1000);
     } catch (InterruptedException e) {
     }
   }
   tracker.offerService();
 }
Exemplo n.º 11
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  private static String lock(String lock) {
    String realPath = "";
    String parent = "/lock";
    String lockName = parent + "/" + lock;

    logger.debug("Getting lock " + lockName);

    try {
      if (zkInstance.exists(parent, false) == null)
        zkInstance.create(parent, new byte[0], ZooDefs.Ids.OPEN_ACL_UNSAFE, CreateMode.fromFlag(0));
    } catch (Exception E) {
      logger.error("Error creating lock node: " + E.toString());
      return null;
    }

    List<String> children = new LinkedList<String>();
    try {
      // List <ACL> ACLList = zkInstance.getACL(lockName, zkInstance.exists(lock, false));

      realPath =
          zkInstance.create(
              lockName, new byte[0], ZooDefs.Ids.OPEN_ACL_UNSAFE, CreateMode.EPHEMERAL_SEQUENTIAL);
      // children = zkInstance.getChildren(realPath, false);
      checkLock:
      while (true) {
        children = zkInstance.getChildren(parent, false);
        for (String curChild : children) {
          String child = parent + "/" + curChild;
          // System.out.println(child + " " + realPath + " " +
          // Integer.toString(child.compareTo(realPath)));
          if (child.compareTo(realPath) < 0
              && child.length() == realPath.length()
              && curChild.startsWith(lock)) {
            // System.out.println(child + " cmp to " + realPath);
            Thread.sleep(300);
            continue checkLock;
          }
        }
        logger.info("Got lock " + lockName);
        return realPath;
      }
    } catch (Exception E) {
      logger.error("Exception while trying to get lock " + lockName + " :" + E.toString());
      E.printStackTrace();
      return null;
    }
  }
Exemplo n.º 12
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 /**
  * Map method. Copies one file from source file system to destination.
  *
  * @param key src len
  * @param value FilePair (FileStatus src, Path dst)
  * @param out Log of failed copies
  * @param reporter
  */
 public void map(
     LongWritable key,
     FilePair value,
     OutputCollector<WritableComparable<?>, Text> out,
     Reporter reporter)
     throws IOException {
   final FileStatus srcstat = value.input;
   final Path relativedst = new Path(value.output);
   try {
     copy(srcstat, relativedst, out, reporter);
   } catch (IOException e) {
     ++failcount;
     reporter.incrCounter(Counter.FAIL, 1);
     updateStatus(reporter);
     final String sfailure = "FAIL " + relativedst + " : " + StringUtils.stringifyException(e);
     out.collect(null, new Text(sfailure));
     LOG.info(sfailure);
     try {
       for (int i = 0; i < 3; ++i) {
         try {
           final Path tmp = new Path(job.get(TMP_DIR_LABEL), relativedst);
           if (destFileSys.delete(tmp, true)) break;
         } catch (Throwable ex) {
           // ignore, we are just cleaning up
           LOG.debug("Ignoring cleanup exception", ex);
         }
         // update status, so we don't get timed out
         updateStatus(reporter);
         Thread.sleep(3 * 1000);
       }
     } catch (InterruptedException inte) {
       throw (IOException) new IOException().initCause(inte);
     }
   } finally {
     updateStatus(reporter);
   }
 }
Exemplo n.º 13
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    public void incrementAndThrottle(int bytes) {
      if (bytesPerSec < 1) { // no throttle at all
        return;
      }
      long currentTime = System.currentTimeMillis();
      long timeDiff = currentTime - lastTime;
      if (timeDiff == 0) {
        timeDiff = 1;
      }

      double bytesPerSec = (bytes / (double) timeDiff) * 1000;
      if (bytesPerSec > this.bytesPerSec) {
        // Throttle
        double exceededByFactorOf = bytesPerSec / this.bytesPerSec;
        try {
          long mustSleep = (long) ((exceededByFactorOf - 1) * timeDiff);
          Thread.sleep(mustSleep);
        } catch (InterruptedException e) {
          e.printStackTrace();
        }
      }

      lastTime = System.currentTimeMillis();
    }
Exemplo n.º 14
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  /**
   * Start writing to a block file If isRecovery is true and the block pre-exists, then we kill all
   * volumeMap.put(b, v); volumeMap.put(b, v); other threads that might be writing to this block,
   * and then reopen the file.
   */
  public BlockWriteStreams writeToBlock(Block b, boolean isRecovery) throws IOException {
    //
    // Make sure the block isn't a valid one - we're still creating it!
    //
    if (isValidBlock(b)) {
      if (!isRecovery) {
        throw new BlockAlreadyExistsException(
            "Block " + b + " is valid, and cannot be written to.");
      }
      // If the block was successfully finalized because all packets
      // were successfully processed at the Datanode but the ack for
      // some of the packets were not received by the client. The client
      // re-opens the connection and retries sending those packets.
      // The other reason is that an "append" is occurring to this block.
      detachBlock(b, 1);
    }
    long blockSize = b.getNumBytes();

    //
    // Serialize access to /tmp, and check if file already there.
    //
    File f = null;
    List<Thread> threads = null;
    synchronized (this) {
      //
      // Is it already in the create process?
      //
      ActiveFile activeFile = ongoingCreates.get(b);
      if (activeFile != null) {
        f = activeFile.file;
        threads = activeFile.threads;

        if (!isRecovery) {
          throw new BlockAlreadyExistsException(
              "Block "
                  + b
                  + " has already been started (though not completed), and thus cannot be created.");
        } else {
          for (Thread thread : threads) {
            thread.interrupt();
          }
        }
        ongoingCreates.remove(b);
      }
      FSVolume v = null;
      if (!isRecovery) {
        v = volumes.getNextVolume(blockSize);
        // create temporary file to hold block in the designated volume
        f = createTmpFile(v, b);
        volumeMap.put(b, new DatanodeBlockInfo(v));
      } else if (f != null) {
        DataNode.LOG.info("Reopen already-open Block for append " + b);
        // create or reuse temporary file to hold block in the
        // designated volume
        v = volumeMap.get(b).getVolume();
        volumeMap.put(b, new DatanodeBlockInfo(v));
      } else {
        // reopening block for appending to it.
        DataNode.LOG.info("Reopen Block for append " + b);
        v = volumeMap.get(b).getVolume();
        f = createTmpFile(v, b);
        File blkfile = getBlockFile(b);
        File oldmeta = getMetaFile(b);
        File newmeta = getMetaFile(f, b);

        // rename meta file to tmp directory
        DataNode.LOG.debug("Renaming " + oldmeta + " to " + newmeta);
        if (!oldmeta.renameTo(newmeta)) {
          throw new IOException(
              "Block "
                  + b
                  + " reopen failed. "
                  + " Unable to move meta file  "
                  + oldmeta
                  + " to tmp dir "
                  + newmeta);
        }

        // rename block file to tmp directory
        DataNode.LOG.debug("Renaming " + blkfile + " to " + f);
        if (!blkfile.renameTo(f)) {
          if (!f.delete()) {
            throw new IOException(
                "Block " + b + " reopen failed. " + " Unable to remove file " + f);
          }
          if (!blkfile.renameTo(f)) {
            throw new IOException(
                "Block "
                    + b
                    + " reopen failed. "
                    + " Unable to move block file "
                    + blkfile
                    + " to tmp dir "
                    + f);
          }
        }
        volumeMap.put(b, new DatanodeBlockInfo(v));
      }
      if (f == null) {
        DataNode.LOG.warn("Block " + b + " reopen failed " + " Unable to locate tmp file.");
        throw new IOException("Block " + b + " reopen failed " + " Unable to locate tmp file.");
      }
      ongoingCreates.put(b, new ActiveFile(f, threads));
    }

    try {
      if (threads != null) {
        for (Thread thread : threads) {
          thread.join();
        }
      }
    } catch (InterruptedException e) {
      throw new IOException("Recovery waiting for thread interrupted.");
    }

    //
    // Finally, allow a writer to the block file
    // REMIND - mjc - make this a filter stream that enforces a max
    // block size, so clients can't go crazy
    //
    File metafile = getMetaFile(f, b);
    DataNode.LOG.debug("writeTo blockfile is " + f + " of size " + f.length());
    DataNode.LOG.debug("writeTo metafile is " + metafile + " of size " + metafile.length());
    return createBlockWriteStreams(f, metafile);
  }
Exemplo n.º 15
0
  /**
   * Try to update an old block to a new block. If there are ongoing create threads running for the
   * old block, the threads will be returned without updating the block.
   *
   * @return ongoing create threads if there is any. Otherwise, return null.
   */
  private synchronized List<Thread> tryUpdateBlock(Block oldblock, Block newblock)
      throws IOException {
    // check ongoing create threads
    final ActiveFile activefile = ongoingCreates.get(oldblock);
    if (activefile != null && !activefile.threads.isEmpty()) {
      // remove dead threads
      for (Iterator<Thread> i = activefile.threads.iterator(); i.hasNext(); ) {
        final Thread t = i.next();
        if (!t.isAlive()) {
          i.remove();
        }
      }

      // return living threads
      if (!activefile.threads.isEmpty()) {
        return new ArrayList<Thread>(activefile.threads);
      }
    }

    // No ongoing create threads is alive. Update block.
    File blockFile = findBlockFile(oldblock.getBlockId());
    if (blockFile == null) {
      throw new IOException("Block " + oldblock + " does not exist.");
    }

    File oldMetaFile = findMetaFile(blockFile);
    long oldgs = parseGenerationStamp(blockFile, oldMetaFile);

    // rename meta file to a tmp file
    File tmpMetaFile =
        new File(
            oldMetaFile.getParent(),
            oldMetaFile.getName() + "_tmp" + newblock.getGenerationStamp());
    if (!oldMetaFile.renameTo(tmpMetaFile)) {
      throw new IOException("Cannot rename block meta file to " + tmpMetaFile);
    }

    // update generation stamp
    if (oldgs > newblock.getGenerationStamp()) {
      throw new IOException(
          "Cannot update block (id="
              + newblock.getBlockId()
              + ") generation stamp from "
              + oldgs
              + " to "
              + newblock.getGenerationStamp());
    }

    // update length
    if (newblock.getNumBytes() > oldblock.getNumBytes()) {
      throw new IOException(
          "Cannot update block file (="
              + blockFile
              + ") length from "
              + oldblock.getNumBytes()
              + " to "
              + newblock.getNumBytes());
    }
    if (newblock.getNumBytes() < oldblock.getNumBytes()) {
      truncateBlock(blockFile, tmpMetaFile, oldblock.getNumBytes(), newblock.getNumBytes());
    }

    // rename the tmp file to the new meta file (with new generation stamp)
    File newMetaFile = getMetaFile(blockFile, newblock);
    if (!tmpMetaFile.renameTo(newMetaFile)) {
      throw new IOException("Cannot rename tmp meta file to " + newMetaFile);
    }

    updateBlockMap(ongoingCreates, oldblock, newblock);
    updateBlockMap(volumeMap, oldblock, newblock);

    // paranoia! verify that the contents of the stored block
    // matches the block file on disk.
    validateBlockMetadata(newblock);
    return null;
  }
  /**
   * Method to move files from HDFS to local filesystem
   *
   * <p>localPath: Path on the machines filesystem fs:FileSystem object from HDFS pathList:List of
   * paths for files that might need to be backed up size:max size in bytes to be backed up
   *
   * <p>ReturnsDate of the last files backed up if reached size limit, else, zero
   */
  public long backupFiles(
      String localPath, String preservePath, FileSystem fs, ArrayList<Path> pathList, long size) {
    Path fsPath;
    long tmpSize = 0;
    long tmpDate = 0;

    // Start iterating over all paths
    for (Path hdfsPath : pathList) {
      try {
        long nFileSize = fs.getContentSummary(hdfsPath).getLength();
        tmpSize = tmpSize + nFileSize;

        if ((tmpSize <= size) || (size == 0)) {
          FileStatus stat = fs.getFileStatus(hdfsPath);

          System.err.println(
              "File "
                  + hdfsPath.toUri().getPath()
                  + " "
                  + nFileSize
                  + " bytes, "
                  + "perms: "
                  + stat.getOwner()
                  + "/"
                  + stat.getGroup()
                  + ", "
                  + stat.getPermission().toString());

          tmpDate = stat.getModificationTime() / 1000;

          String sFsPath = localPath + hdfsPath.toUri().getPath();
          fsPath = new Path(sFsPath);

          File f = new File(sFsPath);

          // COMMENTED OUT: until a few backup cycles run
          // and the mtime gets in fact set on all copied
          // files.
          //
          // ignore it if the file exists and has the same mtime
          // if (f.exists() && f.isFile() && f.lastModified() == stat.getModificationTime())
          // {
          // System.out.println("no need to backup " + f.toString() + ", mtime matches hdfs");
          // continue;
          // }

          if (false == m_bDryRun) {
            // check if we need to back up the local file
            // (not directory), if it already exists.
            if (f.exists() && f.isFile()) {
              // ignore files with substrings in the
              // no-preserve file
              if (true == doPreserveFile(sFsPath)) {
                // move it to the backup path
                String sNewPath = preservePath + hdfsPath.toUri().getPath();
                File newFile = new File(sNewPath);

                // create directory structure for new file?
                if (false == newFile.getParentFile().exists()) {
                  if (false == newFile.getParentFile().mkdirs()) {
                    System.err.println("Failed to mkdirs " + newFile.getParentFile().toString());
                    System.exit(1);
                  }
                }

                // rename existing file to new location
                if (false == f.renameTo(newFile)) {
                  System.err.println(
                      "Failed to renameTo " + f.toString() + " to " + newFile.toString());
                  System.exit(1);
                }

                System.out.println("preserved " + f.toString() + " into " + newFile.toString());
              } else {
                System.out.println("skipped preservation of " + f.toString());
              }
            }

            // copy from hdfs to local filesystem
            fs.copyToLocalFile(hdfsPath, fsPath);

            // set the mtime to match hdfs file
            f.setLastModified(stat.getModificationTime());

            // compare checksums on both files
            compareChecksums(fs, hdfsPath, sFsPath);
          }

          // don't print the progress after every file -- go
          // by at least 1% increments
          long nPercentDone = (long) (100 * tmpSize / m_nTotalBytes);
          if (nPercentDone > m_nLastPercentBytesDone) {
            System.out.println(
                "progress: copied "
                    + prettyPrintBytes(tmpSize)
                    + ", "
                    + nPercentDone
                    + "% done"
                    + ", tstamp="
                    + tmpDate);

            m_nLastPercentBytesDone = nPercentDone;
          }

          if (m_nSleepSeconds > 0) {
            try {
              Thread.sleep(1000 * m_nSleepSeconds);
            } catch (Exception e2) {
              // ignore
            }
          }
        } else {
          return tmpDate;
        }
      } catch (IOException e) {
        System.err.println("FATAL ERROR: Something wrong with the file");
        System.err.println(e);
        System.out.println(tmpDate);
        System.exit(1);

        return 0;
      }
    }

    return 0;
  }
Exemplo n.º 17
0
  /** In case of interrupted, written file is not deleted. */
  private void copyFile(File sourceFile, File destFile, Reporter reporter)
      throws IOException, InterruptedException {
    if (!destFile.exists()) {
      destFile.createNewFile();
    }
    FileChannel source = null;
    FileChannel destination = null;

    Throttler throttler = new Throttler((double) bytesPerSecThrottle);

    FileInputStream iS = null;
    FileOutputStream oS = null;

    try {
      iS = new FileInputStream(sourceFile);
      oS = new FileOutputStream(destFile);
      source = iS.getChannel();
      destination = oS.getChannel();
      long bytesSoFar = 0;
      long reportingBytesSoFar = 0;
      long size = source.size();

      int transferred = 0;

      while (bytesSoFar < size) {
        // Needed to being able to be interrupted at any moment.
        if (Thread.interrupted()) {
          throw new InterruptedException();
        }

        // Casting to int here is safe since we will transfer at most "downloadBufferSize" bytes.
        // This is done on purpose for being able to implement Throttling.
        transferred = (int) destination.transferFrom(source, bytesSoFar, downloadBufferSize);
        bytesSoFar += transferred;
        reportingBytesSoFar += transferred;
        throttler.incrementAndThrottle(transferred);
        if (reportingBytesSoFar >= bytesToReportProgress) {
          reporter.progress(reportingBytesSoFar);
          reportingBytesSoFar = 0l;
        }
      }

      if (reporter != null) {
        reporter.progress(reportingBytesSoFar);
      }

    } catch (InterruptedException e) {
      e.printStackTrace();
    } finally {
      if (iS != null) {
        iS.close();
      }
      if (oS != null) {
        oS.close();
      }
      if (source != null) {
        source.close();
      }
      if (destination != null) {
        destination.close();
      }
    }
  }
Exemplo n.º 18
0
  /*
   * Fetch a file that is in a S3 file system. Return a local File. It accepts "s3://" and "s3n://" prefixes.
   * Interruptible.
   */
  private File s3Fetch(URI uri, Reporter reporter) throws IOException, InterruptedException {
    String bucketName = uri.getHost();
    String path = uri.getPath();
    UUID uniqueId = UUID.randomUUID();
    File destFolder = new File(tempDir, uniqueId.toString() + "/" + path);
    if (destFolder.exists()) {
      FileUtils.deleteDirectory(destFolder);
    }
    destFolder.mkdirs();

    Throttler throttler = new Throttler((double) bytesPerSecThrottle);

    boolean done = false;
    try {
      s3Service = new RestS3Service(getCredentials());
      if (s3Service.checkBucketStatus(bucketName) != RestS3Service.BUCKET_STATUS__MY_BUCKET) {
        throw new IOException("Bucket doesn't exist or is already claimed: " + bucketName);
      }

      if (path.startsWith("/")) {
        path = path.substring(1, path.length());
      }

      for (S3Object object : s3Service.listObjects(new S3Bucket(bucketName), path, "")) {
        long bytesSoFar = 0;

        String fileName = path;
        if (path.contains("/")) {
          fileName = path.substring(path.lastIndexOf("/") + 1, path.length());
        }
        File fileDest = new File(destFolder, fileName);
        log.info("Downloading " + object.getKey() + " to " + fileDest + " ...");

        if (fileDest.exists()) {
          fileDest.delete();
        }

        object = s3Service.getObject(new S3Bucket(bucketName), object.getKey());
        InputStream iS = object.getDataInputStream();
        FileOutputStream writer = new FileOutputStream(fileDest);
        byte[] buffer = new byte[downloadBufferSize];

        int nRead;
        while ((nRead = iS.read(buffer, 0, buffer.length)) != -1) {
          // Needed to being able to be interrupted at any moment.
          if (Thread.interrupted()) {
            iS.close();
            writer.close();
            cleanDirNoExceptions(destFolder);
            throw new InterruptedException();
          }

          bytesSoFar += nRead;
          writer.write(buffer, 0, nRead);
          throttler.incrementAndThrottle(nRead);
          if (bytesSoFar >= bytesToReportProgress) {
            reporter.progress(bytesSoFar);
            bytesSoFar = 0l;
          }
        }

        if (reporter != null) {
          reporter.progress(bytesSoFar);
        }

        writer.close();
        iS.close();
        done = true;
      }

      if (!done) {
        throw new IOException("Bucket is empty! " + bucketName + " path: " + path);
      }
    } catch (S3ServiceException e) {
      throw new IOException(e);
    }

    return destFolder;
  }