Exemplo n.º 1
0
  public void unsafeRefreshChromosomes(SuperAdapter superAdapter) {

    if (chrBox1.getSelectedIndex() == 0 || chrBox2.getSelectedIndex() == 0) {
      chrBox1.setSelectedIndex(0);
      chrBox2.setSelectedIndex(0);
    }

    Chromosome chr1 = (Chromosome) chrBox1.getSelectedItem();
    Chromosome chr2 = (Chromosome) chrBox2.getSelectedItem();

    Chromosome chrX = chr1.getIndex() < chr2.getIndex() ? chr1 : chr2;
    Chromosome chrY = chr1.getIndex() < chr2.getIndex() ? chr2 : chr1;

    setNormalizationDisplayState(superAdapter.getHiC());

    superAdapter.unsafeUpdateHiCChromosomes(chrX, chrY);

    updateThumbnail(superAdapter.getHiC());
  }
Exemplo n.º 2
0
 public void setSelectedDisplayOption(MatrixType[] options, boolean control) {
   if (control) {
     MatrixType originalMatrixType = (MatrixType) displayOptionComboBox.getSelectedItem();
     displayOptionComboBox.setModel(new DefaultComboBoxModel<MatrixType>(options));
     int indx = 0;
     for (int i = 0; i < displayOptionComboBox.getItemCount(); i++) {
       if (originalMatrixType.equals(displayOptionComboBox.getItemAt(i))) {
         indx = i;
         break;
       }
     }
     displayOptionComboBox.setSelectedIndex(indx);
   } else {
     displayOptionComboBox.setModel(new DefaultComboBoxModel<MatrixType>(options));
     displayOptionComboBox.setSelectedIndex(0);
   }
 }
Exemplo n.º 3
0
 private boolean isWholeGenome() {
   Chromosome chr1 = (Chromosome) chrBox1.getSelectedItem();
   Chromosome chr2 = (Chromosome) chrBox2.getSelectedItem();
   return chr1.getName().equals("All") || chr2.getName().equals("All");
 }
Exemplo n.º 4
0
 private boolean isIntraChromosomal() {
   Chromosome chr1 = (Chromosome) chrBox1.getSelectedItem();
   Chromosome chr2 = (Chromosome) chrBox2.getSelectedItem();
   return chr1.getIndex() != chr2.getIndex();
 }