/**
* Chromosome "0" is whole genome
*
* @param chromosomes list of chromosomes
*/
void setChromosomes(List<Chromosome> chromosomes) {
int[] chromosomeBoundaries = new int[chromosomes.size() - 1];
long bound = 0;
for (int i = 1; i < chromosomes.size(); i++) {
Chromosome c = chromosomes.get(i);
bound += (c.getLength() / 1000);
chromosomeBoundaries[i - 1] = (int) bound;
}
heatmapPanel.setChromosomeBoundaries(chromosomeBoundaries);
chrBox1.setModel(
new DefaultComboBoxModel<Chromosome>(
chromosomes.toArray(new Chromosome[chromosomes.size()])));
chrBox2.setModel(
new DefaultComboBoxModel<Chromosome>(
chromosomes.toArray(new Chromosome[chromosomes.size()])));
}
