public GVFVariantVariantEffectComponent copy(GVFVariant e) {
GVFVariantVariantEffectComponent dst = e.new GVFVariantVariantEffectComponent();
dst.sequenceVariant = sequenceVariant == null ? null : sequenceVariant.copy();
dst.index = index == null ? null : index.copy();
dst.featureType = featureType == null ? null : featureType.copy();
dst.featureId = new ArrayList<String_>();
for (String_ i : featureId) dst.featureId.add(i.copy());
return dst;
}
public GVFVariant copy() {
GVFVariant dst = new GVFVariant();
dst.subject = subject == null ? null : subject.copy(dst);
dst.meta = meta == null ? null : meta.copy();
dst.sourceFile = sourceFile == null ? null : sourceFile.copy();
dst.seqid = seqid == null ? null : seqid.copy();
dst.source = source == null ? null : source.copy();
dst.type = type == null ? null : type.copy();
dst.start = start == null ? null : start.copy();
dst.end = end == null ? null : end.copy();
dst.score = score == null ? null : score.copy();
dst.strand = strand == null ? null : strand.copy();
dst.featureId = featureId == null ? null : featureId.copy();
dst.alias = alias == null ? null : alias.copy();
dst.dbxref = dbxref == null ? null : dbxref.copy(dst);
dst.variantSeq = new ArrayList<String_>();
for (String_ i : variantSeq) dst.variantSeq.add(i.copy());
dst.referenceSeq = referenceSeq == null ? null : referenceSeq.copy();
dst.variantFreq = new ArrayList<Decimal>();
for (Decimal i : variantFreq) dst.variantFreq.add(i.copy());
dst.variantEffect = new ArrayList<GVFVariantVariantEffectComponent>();
for (GVFVariantVariantEffectComponent i : variantEffect) dst.variantEffect.add(i.copy(dst));
dst.startRange = startRange == null ? null : startRange.copy(dst);
dst.endRange = endRange == null ? null : endRange.copy(dst);
dst.variantCodon = new ArrayList<String_>();
for (String_ i : variantCodon) dst.variantCodon.add(i.copy());
dst.referenceCodon = referenceCodon == null ? null : referenceCodon.copy();
dst.variantAA = new ArrayList<String_>();
for (String_ i : variantAA) dst.variantAA.add(i.copy());
dst.referenceAA = new ArrayList<String_>();
for (String_ i : referenceAA) dst.referenceAA.add(i.copy());
dst.breakpointDetail = breakpointDetail == null ? null : breakpointDetail.copy(dst);
dst.sequenceContext = sequenceContext == null ? null : sequenceContext.copy(dst);
dst.individual = new ArrayList<String_>();
for (String_ i : individual) dst.individual.add(i.copy());
dst.sample = new ArrayList<GVFVariantSampleComponent>();
for (GVFVariantSampleComponent i : sample) dst.sample.add(i.copy(dst));
return dst;
}