/* public void fixAtomsOfBond(){ // do fix bonds of Atom first
ArrayList<Atom> temp = new ArrayList<Atom>(atomList.size());
ArrayList<Bond> temp2 = new ArrayList<Bond>(bondList.size());
for(int i = 0; i < temp2.size(); i++){ // iterates bondList
for(int j = 0; j < atomList.size(); j++){//iterates atomlist
temp2 = atomList.get(j).getAdjacentBonds();
for(int k = 0; k < temp2.size(); k++){ //iterates bonds on atomList
if(temp2.get(k).getEdgeNum() == bondList.get(k).getEdgeNum()){
temp.set(k, bondList.get(j));
}
}
bondList.get(i).setAdjacentAtoms(temp);
}
}
} */
public String toString() {
String temp = " ";
if (atomList == null) {
return "Null found for atomList";
}
for (Atom a : atomList) {
temp = temp.concat(a.toString()) + "\n";
}
if (bondList == null) {
return "Null found for bondList";
}
if (bondList.isEmpty()) {
temp += " bondList is empty";
// return "bondList is empty";
}
for (Bond b : bondList) {
temp = temp.concat(b.toString()) + "\n";
}
return temp;
}
@Override
public void setValue(Atom a, Atom v) {
m_phi.setValue(a, v);
m_variableResolver.put(a.toString(), v.toString());
}