private void readIndexMap() throws IOException {
MappedByteBuffer mapOffset = makeReadOnlyBuffer(8, 8);
if (mapOffset.getInt() != MultipageTiffWriter.INDEX_MAP_OFFSET_HEADER) {
ReportingUtils.logError("Image map offset header incorrect");
indexMap_ = null;
return;
}
long offset = unsignInt(mapOffset.getInt());
MappedByteBuffer mapHeader = makeReadOnlyBuffer(offset, 8);
int headerCode = mapHeader.getInt();
if (headerCode != MultipageTiffWriter.INDEX_MAP_HEADER) {
ReportingUtils.logError("Image index map header incorrect");
indexMap_ = null;
return;
}
int numMappings = mapHeader.getInt();
MappedByteBuffer mapData = makeReadOnlyBuffer(offset + 8, 24 * numMappings);
for (int i = 0; i < numMappings; i++) {
int channel = mapData.getInt();
int slice = mapData.getInt();
int frame = mapData.getInt();
int position = mapData.getInt();
long imageOffset = mapData.getLong();
indexMap_.put(MDUtils.generateLabel(channel, slice, frame, position), imageOffset);
}
}
private static void parseMeta() {
try {
RandomAccessFile f = new RandomAccessFile(path + "meta", "r");
MappedByteBuffer mbb = f.getChannel().map(MapMode.READ_ONLY, 0, f.length());
mbb.position(0);
pos = mbb.getLong();
long ck = mbb.getLong();
int len = mbb.getInt();
byte[] dst = new byte[len];
mbb.get(dst);
name = new String(dst, Charset.forName("UTF-8"));
System.out.println("file: " + name + " pos: " + pos + " checksum: " + ck);
mbb = null;
f.close();
} catch (Exception e) {
System.out.println(e.getMessage());
pos = 0;
name = "null";
}
}
/**
* Step through the table of sections, looking for .rsrc. When the .rsrc sections is found, call
* another function to process it.
*
* @param file The file we're reading from
* @param sectionsBase A pointer to the beginning of the sections.
* @param numberOfSections The number of sections.
* @return The version number, or 0 if it couldn't be found.
* @throws IOException If there is a problem finding the version.
*/
private static int processSections(
MappedByteBuffer file, int sectionsBase, int numberOfSections, boolean byteorder)
throws IOException {
/* The location where the loaded RVA will be */
int virtualStart;
/* The location in the file where the data starts */
int rawStart;
/* The difference between the virtual start and the raw start */
int rsrcVirtualToRaw;
/* A pointer to the beginning of the section */
int sectionBase;
/* Loop over the sections */
for (int i = 0; i < numberOfSections; i++) {
/* Get the virtual address where the section starts */
virtualStart = file.getInt(sectionsBase + (i * 40) + 12);
/* Get the raw address where the section starts */
rawStart = file.getInt(sectionsBase + (i * 40) + 20);
/* Get the base of the section */
sectionBase = sectionsBase + (i * 40);
/* Find the difference between the actual location of rsrc and the virtual location of it */
rsrcVirtualToRaw = rawStart - virtualStart;
/* If we've found the rsrc section, process it. If not, we really don't care. */
if (file.getLong(sectionsBase + (i * 40)) == rsrc)
return processResourceRecord(
new LinkedList<Integer>(),
file,
0,
file.getInt(sectionBase + 20),
rsrcVirtualToRaw,
byteorder);
}
return 0;
}
@Override
long readLong() {
return mFileBuffer.getLong();
}
