Exemplo n.º 1
0
  Entry encode(final T o, final String parentDN) throws LDAPPersistException {
    // Get the attributes that should be included in the entry.
    final LinkedHashMap<String, Attribute> attrMap = new LinkedHashMap<String, Attribute>();
    attrMap.put("objectClass", objectClassAttribute);

    for (final Map.Entry<String, FieldInfo> e : fieldMap.entrySet()) {
      final FieldInfo i = e.getValue();
      if (!i.includeInAdd()) {
        continue;
      }

      final Attribute a = i.encode(o, false);
      if (a != null) {
        attrMap.put(e.getKey(), a);
      }
    }

    for (final Map.Entry<String, GetterInfo> e : getterMap.entrySet()) {
      final GetterInfo i = e.getValue();
      if (!i.includeInAdd()) {
        continue;
      }

      final Attribute a = i.encode(o);
      if (a != null) {
        attrMap.put(e.getKey(), a);
      }
    }

    final String dn = constructDN(o, parentDN, attrMap);
    final Entry entry = new Entry(dn, attrMap.values());

    if (postEncodeMethod != null) {
      try {
        postEncodeMethod.invoke(o, entry);
      } catch (Throwable t) {
        debugException(t);

        if (t instanceof InvocationTargetException) {
          t = ((InvocationTargetException) t).getTargetException();
        }

        throw new LDAPPersistException(
            ERR_OBJECT_HANDLER_ERROR_INVOKING_POST_ENCODE_METHOD.get(
                postEncodeMethod.getName(), type.getName(), getExceptionMessage(t)),
            t);
      }
    }

    setDNAndEntryFields(o, entry);

    if (superclassHandler != null) {
      final Entry e = superclassHandler.encode(o, parentDN);
      for (final Attribute a : e.getAttributes()) {
        entry.addAttribute(a);
      }
    }

    return entry;
  }
Exemplo n.º 2
0
  @Nullable
  public InstanceFactory findInstanceFactory(@Nonnull Type mockedType) {
    InstanceFactory instanceFactory = mockedTypesAndInstances.get(mockedType);

    if (instanceFactory != null) {
      return instanceFactory;
    }

    Class<?> mockedClass = getClassType(mockedType);
    //noinspection ReuseOfLocalVariable
    instanceFactory = mockedTypesAndInstances.get(mockedClass);

    if (instanceFactory != null) {
      return instanceFactory;
    }

    boolean abstractType = mockedClass.isInterface() || isAbstract(mockedClass.getModifiers());

    for (Entry<Type, InstanceFactory> entry : mockedTypesAndInstances.entrySet()) {
      Type registeredMockedType = entry.getKey();
      Class<?> registeredMockedClass = getClassType(registeredMockedType);

      if (abstractType) {
        registeredMockedClass = getMockedClassOrInterfaceType(registeredMockedClass);
      }

      if (mockedClass.isAssignableFrom(registeredMockedClass)) {
        instanceFactory = entry.getValue();
        break;
      }
    }

    return instanceFactory;
  }
  private static void checkGarbageCollectionNotificationInfoContent(
      GarbageCollectionNotificationInfo notif) throws Exception {
    System.out.println("GC notification for " + notif.getGcName());
    System.out.print("Action: " + notif.getGcAction());
    System.out.println(" Cause: " + notif.getGcCause());
    GcInfo info = notif.getGcInfo();
    System.out.print("GC Info #" + info.getId());
    System.out.print(" start:" + info.getStartTime());
    System.out.print(" end:" + info.getEndTime());
    System.out.println(" (" + info.getDuration() + "ms)");
    Map<String, MemoryUsage> usage = info.getMemoryUsageBeforeGc();

    List<String> pnames = new ArrayList<String>();
    for (Map.Entry entry : usage.entrySet()) {
      String poolname = (String) entry.getKey();
      pnames.add(poolname);
      MemoryUsage busage = (MemoryUsage) entry.getValue();
      MemoryUsage ausage = (MemoryUsage) info.getMemoryUsageAfterGc().get(poolname);
      if (ausage == null) {
        throw new RuntimeException("After Gc Memory does not exist" + " for " + poolname);
      }
      System.out.println("Usage for pool " + poolname);
      System.out.println("   Before GC: " + busage);
      System.out.println("   After GC: " + ausage);
    }

    // check if memory usage for all memory pools are returned
    List<MemoryPoolMXBean> pools = ManagementFactory.getMemoryPoolMXBeans();
    for (MemoryPoolMXBean p : pools) {
      if (!pnames.contains(p.getName())) {
        throw new RuntimeException(
            "GcInfo does not contain " + "memory usage for pool " + p.getName());
      }
    }
  }
Exemplo n.º 4
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  private void putMap(String name, Map m) {
    _put(OBJECT, name);
    final int sizePos = _buf.getPosition();
    _buf.writeInt(0);

    for (Map.Entry entry : (Set<Map.Entry>) m.entrySet())
      _putObjectField(entry.getKey().toString(), entry.getValue());

    _buf.write(EOO);
    _buf.writeInt(sizePos, _buf.getPosition() - sizePos);
  }
Exemplo n.º 5
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 public void addEnvToIntent(Intent intent) {
   Map<String, String> envMap = System.getenv();
   Set<Map.Entry<String, String>> envSet = envMap.entrySet();
   Iterator<Map.Entry<String, String>> envIter = envSet.iterator();
   int c = 0;
   while (envIter.hasNext()) {
     Map.Entry<String, String> entry = envIter.next();
     intent.putExtra("env" + c, entry.getKey() + "=" + entry.getValue());
     c++;
   }
 }
  /**
   * Adds the channel-bundles of this <tt>Conference</tt> as
   * <tt>ColibriConferenceIQ.ChannelBundle</tt> instances in <tt>iq</tt>.
   *
   * @param iq the <tt>ColibriConferenceIQ</tt> in which to describe.
   */
  void describeChannelBundles(ColibriConferenceIQ iq) {
    synchronized (transportManagers) {
      for (Map.Entry<String, IceUdpTransportManager> entry : transportManagers.entrySet()) {
        ColibriConferenceIQ.ChannelBundle responseBundleIQ =
            new ColibriConferenceIQ.ChannelBundle(entry.getKey());

        entry.getValue().describe(responseBundleIQ);
        iq.addChannelBundle(responseBundleIQ);
      }
    }
  }
 /**
  * Quickie init test of the static initializer and print out of asynch response mappings
  *
  * @param args none
  */
 public static void main(String[] args) {
   SimpleLogger.info("Initialized");
   for (Map.Entry<Byte, Method> entry : keyToMethod.entrySet()) {
     Method am = keyToAsynchMethod.get(entry.getKey());
     SimpleLogger.info("\t", entry.getValue().getName(), " --> ", am.getName());
   }
   StringBuilder b = new StringBuilder("Mappings");
   for (Map.Entry<Byte, Method> entry : keyToMethod.entrySet()) {
     b.append("\n\t[")
         .append(entry.getKey())
         .append("]")
         .append("   --")
         .append(entry.getValue().getName())
         .append("--   ")
         .append("[")
         .append(methodToKey.get(entry.getValue()))
         .append("]");
   }
   SimpleLogger.info(b);
 }
Exemplo n.º 8
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  public Query setColumnMappings(Map<String, String> mappings) {

    this.caseSensitiveColumnMappings = new HashMap<>();
    this.columnMappings = new HashMap<>();

    for (Map.Entry<String, String> entry : mappings.entrySet()) {
      this.caseSensitiveColumnMappings.put(entry.getKey(), entry.getValue());
      this.columnMappings.put(entry.getKey().toLowerCase(), entry.getValue().toLowerCase());
    }

    return this;
  }
  /** {@inheritDoc} */
  @Override
  public void onDiscoveryDataReceived(UUID nodeId, UUID rmtNodeId, Serializable data) {
    Map<String, Serializable> discData = (Map<String, Serializable>) data;

    if (discData != null) {
      for (Map.Entry<String, Serializable> e : discData.entrySet()) {
        PluginProvider provider = plugins.get(e.getKey());

        if (provider != null) provider.receiveDiscoveryData(nodeId, e.getValue());
        else U.warn(log, "Received discovery data for unknown plugin: " + e.getKey());
      }
    }
  }
Exemplo n.º 10
0
  /**
   * Returns the map of attributes names and values for attributes which value is neither null or
   * the default value. These attributes are considered having a non default value and must be
   * written out.
   *
   * @return map of attributes indexed by name that must be persisted
   */
  private Map<String, String> attributesToWrite() {

    Map<String, String> attributesToWrite = new HashMap<String, String>();
    Map<String, String> localAttr = new HashMap<String, String>(attributes);
    for (Map.Entry<String, String> a : localAttr.entrySet()) {
      ConfigModel.AttributeLeaf am = model.attributes.get(a.getKey());
      String dv = am.getDefaultValue();
      if (dv == null || !dv.equals(a.getValue())) {
        attributesToWrite.put(a.getKey(), a.getValue());
      }
    }
    return attributesToWrite;
  }
 private Map<Object, Object> convertMap(
     Class<?> mapClass,
     Type targetKeyType,
     Type targetValueType,
     Map<?, ?> sourceObject,
     Action<? super SourceObjectMapping> mapping) {
   Map<Object, Object> convertedElements = collectionMapper.createEmptyMap(mapClass);
   for (Map.Entry<?, ?> entry : sourceObject.entrySet()) {
     convertedElements.put(
         convert(targetKeyType, entry.getKey(), mapping),
         convert(targetValueType, entry.getValue(), mapping));
   }
   return convertedElements;
 }
Exemplo n.º 12
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  /** {@inheritDoc} */
  @Nullable
  @Override
  public Serializable collectDiscoveryData(UUID nodeId) {
    HashMap<String, Serializable> discData = null;

    for (Map.Entry<String, PluginProvider> e : plugins.entrySet()) {
      Serializable data = e.getValue().provideDiscoveryData(nodeId);

      if (data != null) {
        if (discData == null) discData = new HashMap<>();

        discData.put(e.getKey(), data);
      }
    }

    return discData;
  }
Exemplo n.º 13
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  private PreparedStatement buildPreparedStatement(boolean allowArrayParameters) {
    // array parameter handling
    parsedQuery =
        ArrayParameters.updateQueryAndParametersIndexes(
            parsedQuery, paramNameToIdxMap, parameters, allowArrayParameters);

    // prepare statement creation
    if (preparedStatement == null) {
      try {
        if (columnNames != null && columnNames.length > 0) {
          preparedStatement =
              connection.getJdbcConnection().prepareStatement(parsedQuery, columnNames);
        } else if (returnGeneratedKeys) {
          preparedStatement =
              connection
                  .getJdbcConnection()
                  .prepareStatement(parsedQuery, Statement.RETURN_GENERATED_KEYS);
        } else {
          preparedStatement = connection.getJdbcConnection().prepareStatement(parsedQuery);
        }
      } catch (SQLException ex) {
        throw new Sql2oException(
            String.format("Error preparing statement - %s", ex.getMessage()), ex);
      }
      connection.registerStatement(preparedStatement);
    }

    // parameters assignation to query
    for (Map.Entry<String, ParameterSetter> parameter : parameters.entrySet()) {
      for (int paramIdx : paramNameToIdxMap.get(parameter.getKey())) {
        try {
          parameter.getValue().setParameter(paramIdx, preparedStatement);
        } catch (SQLException e) {
          throw new RuntimeException(
              String.format("Error adding parameter '%s' - %s", parameter.getKey(), e.getMessage()),
              e);
        }
      }
    }
    // the parameters need to be cleared, so in case of batch, only new parameters will be added
    parameters.clear();

    return preparedStatement;
  }
Exemplo n.º 14
0
  private static Dictionary<String, Object> getDictionary(
      Map<String, Type> types, Map<String, Object> values) throws Exception {
    Hashtable<String, Object> ht = new Hashtable<String, Object>();
    for (Map.Entry<String, Object> e : values.entrySet()) {
      String key = e.getKey();
      Object value = e.getValue();

      Type type;
      if (types != null && (type = types.get(key)) != null) {

        if (type.scalar != null) {
          value = convert(value, type.scalar);
        } else if (type.vectorOf != null) {
          Collection<Object> coll = (Collection<Object>) value;
          Vector vector = new Vector();
          for (Object o : coll) {
            vector.add(convert(o, type.vectorOf));
          }
          value = vector;
        } else if (type.arrayOf != null) {
          if (value instanceof String && type.arrayOf.equals("byte")) {
            value = Base64.decodeBase64((String) value);
          } else {
            Collection<Object> coll = (Collection<Object>) value;
            Object array = Array.newInstance(getClass(type.arrayOf), coll.size());
            int n = 0;
            for (Object o : coll) {
              Array.set(array, n++, convert(o, type.arrayOf));
            }
            value = array;
          }
        } else {
          throw new IllegalArgumentException(
              "Key " + key + " has type but neither scalar, vectorOf, nor arrayOf is set");
        }
      }
      ht.put(key, value);
    }
    return ht;
  }
Exemplo n.º 15
0
    /** Enter a set of generated class files. */
    private List<ClassSymbol> enterClassFiles(Map<String, JavaFileObject> classFiles) {
      ClassReader reader = ClassReader.instance(context);
      Names names = Names.instance(context);
      List<ClassSymbol> list = List.nil();

      for (Map.Entry<String, JavaFileObject> entry : classFiles.entrySet()) {
        Name name = names.fromString(entry.getKey());
        JavaFileObject file = entry.getValue();
        if (file.getKind() != JavaFileObject.Kind.CLASS) throw new AssertionError(file);
        ClassSymbol cs;
        if (isPkgInfo(file, JavaFileObject.Kind.CLASS)) {
          Name packageName = Convert.packagePart(name);
          PackageSymbol p = reader.enterPackage(packageName);
          if (p.package_info == null)
            p.package_info = reader.enterClass(Convert.shortName(name), p);
          cs = p.package_info;
          if (cs.classfile == null) cs.classfile = file;
        } else cs = reader.enterClass(name, file);
        list = list.prepend(cs);
      }
      return list.reverse();
    }
Exemplo n.º 16
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  public static String generateProxy(Class interfaceClass) throws Exception {
    StringBuilder b = new StringBuilder();
    b.append("#include <jni.h>\n");
    b.append("#ifdef _WIN32\n");
    b.append("#define PROXY_EXPORT __declspec(dllexport)\n");
    b.append("#else\n");
    b.append("#define PROXY_EXPORT\n");
    b.append("#endif\n");
    b.append(
        "#define FIND_GLOBAL_CLASS(name) (*env)->NewGlobalRef(env, (*env)->FindClass(env, name))\n");

    List<ProxiedMethod> methods = new ArrayList<ProxiedMethod>();
    int iClassName = 0, iMethodName = 0;
    Map<Class, String> classVarNames = new HashMap<Class, String>();

    for (Method m : interfaceClass.getDeclaredMethods()) {
      try {
        ProxiedMethod pm = getProxiedMethod(m);
        String classVarName = classVarNames.get(pm.owner);
        if (classVarName == null)
          classVarNames.put(pm.owner, classVarName = "gClass" + (++iClassName));
        pm.classVarName = classVarName;
        pm.methodVarName = "gMethod" + (++iMethodName);
        methods.add(pm);
      } catch (Throwable th) {
        // th.printStackTrace();
      }
    }

    b.append("jboolean inited = JNI_FALSE;\n");
    String instanceVarName = "gProxiedInstance";
    b.append("JNIEnv* env = NULL;\n");
    b.append("JavaVM* jvm = NULL;\n");
    b.append("jobject ").append(instanceVarName).append(" = NULL;\n");
    for (String n : classVarNames.values()) b.append("jclass ").append(n).append(" = NULL;\n");

    for (ProxiedMethod pm : methods)
      b.append("jmethodID ").append(pm.methodVarName).append(" = NULL;\n");

    String jniInit = "jni_init";
    b.append("void ").append(jniInit).append("(JNIEnv* env) {\n");
    b.append("\tif (inited) return; else inited = JNI_TRUE;\n");

    for (Map.Entry<Class, String> e : classVarNames.entrySet()) {
      String n = e.getValue();
      Class c = e.getKey();
      b.append("\t")
          .append(n)
          .append(" = ")
          .append("FIND_GLOBAL_CLASS(\"")
          .append(name(c))
          .append("\");\n");
    }
    for (ProxiedMethod pm : methods) {
      int mods = pm.method.getModifiers();
      b.append("\t")
          .append(pm.methodVarName)
          .append(" = ")
          .append("(*env)->")
          .append(Modifier.isStatic(mods) ? "GetStaticMethodID" : "GetMethodID")
          .append("(env, ")
          .append(pm.classVarName)
          .append(", \"")
          .append(pm.name)
          .append("\", \"")
          .append(pm.jni_signature)
          .append("\");\n");
    }
    b.append("}\n");

    for (ProxiedMethod pm : methods) {
      b.append("PROXY_EXPORT ").append(pm.c_signature).append(" {\n");
      int mods = pm.method.getModifiers();

      b.append("\t").append(jniInit).append("();\n");
      b.append("\t");
      if (pm.method.getReturnType() != null && !pm.method.getReturnType().equals(void.class))
        b.append("return ");

      StringBuilder r = new StringBuilder();

      boolean stat = Modifier.isStatic(mods);
      r.append("(*env)->")
          .append("Call" + (stat ? "Static" : "") + pm.retCapitalized + "Method")
          .append("(env, ");
      if (stat) r.append(pm.classVarName);
      else r.append(instanceVarName);
      for (String argValue : pm.argValues) {
        r.append(", \n\t\t");
        r.append(argValue);
      }

      // TODO...
      r.append("\n\t)");
      b.append(c_signature(pm.method.getReturnType(), r.toString())[2]);

      b.append(";\n");

      b.append("}\n");
    }

    return b.toString();
  }
Exemplo n.º 17
0
  private void discoverAndRunProcs(
      Context context,
      Set<TypeElement> annotationsPresent,
      List<ClassSymbol> topLevelClasses,
      List<PackageSymbol> packageInfoFiles) {
    Map<String, TypeElement> unmatchedAnnotations =
        new HashMap<String, TypeElement>(annotationsPresent.size());

    for (TypeElement a : annotationsPresent) {
      unmatchedAnnotations.put(a.getQualifiedName().toString(), a);
    }

    // Give "*" processors a chance to match
    if (unmatchedAnnotations.size() == 0) unmatchedAnnotations.put("", null);

    DiscoveredProcessors.ProcessorStateIterator psi = discoveredProcs.iterator();
    // TODO: Create proper argument values; need past round
    // information to fill in this constructor.  Note that the 1
    // st round of processing could be the last round if there
    // were parse errors on the initial source files; however, we
    // are not doing processing in that case.

    Set<Element> rootElements = new LinkedHashSet<Element>();
    rootElements.addAll(topLevelClasses);
    rootElements.addAll(packageInfoFiles);
    rootElements = Collections.unmodifiableSet(rootElements);

    RoundEnvironment renv =
        new JavacRoundEnvironment(false, false, rootElements, JavacProcessingEnvironment.this);

    while (unmatchedAnnotations.size() > 0 && psi.hasNext()) {
      ProcessorState ps = psi.next();
      Set<String> matchedNames = new HashSet<String>();
      Set<TypeElement> typeElements = new LinkedHashSet<TypeElement>();

      for (Map.Entry<String, TypeElement> entry : unmatchedAnnotations.entrySet()) {
        String unmatchedAnnotationName = entry.getKey();
        if (ps.annotationSupported(unmatchedAnnotationName)) {
          matchedNames.add(unmatchedAnnotationName);
          TypeElement te = entry.getValue();
          if (te != null) typeElements.add(te);
        }
      }

      if (matchedNames.size() > 0 || ps.contributed) {
        boolean processingResult = callProcessor(ps.processor, typeElements, renv);
        ps.contributed = true;
        ps.removeSupportedOptions(unmatchedProcessorOptions);

        if (printProcessorInfo || verbose) {
          log.printNoteLines(
              "x.print.processor.info",
              ps.processor.getClass().getName(),
              matchedNames.toString(),
              processingResult);
        }

        if (processingResult) {
          unmatchedAnnotations.keySet().removeAll(matchedNames);
        }
      }
    }
    unmatchedAnnotations.remove("");

    if (lint && unmatchedAnnotations.size() > 0) {
      // Remove annotations processed by javac
      unmatchedAnnotations.keySet().removeAll(platformAnnotations);
      if (unmatchedAnnotations.size() > 0) {
        log = Log.instance(context);
        log.warning("proc.annotations.without.processors", unmatchedAnnotations.keySet());
      }
    }

    // Run contributing processors that haven't run yet
    psi.runContributingProcs(renv);

    // Debugging
    if (options.isSet("displayFilerState")) filer.displayState();
  }
Exemplo n.º 18
0
  List<Modification> getModifications(
      final T o, final boolean deleteNullValues, final String... attributes)
      throws LDAPPersistException {
    final ReadOnlyEntry originalEntry;
    if (entryField != null) {
      originalEntry = getEntry(o);
    } else {
      originalEntry = null;
    }
    if (originalEntry != null) {
      try {
        final T decodedOrig = decode(originalEntry);
        final Entry reEncodedOriginal = encode(decodedOrig, originalEntry.getParentDNString());

        final Entry newEntry = encode(o, originalEntry.getParentDNString());
        final List<Modification> mods =
            Entry.diff(reEncodedOriginal, newEntry, true, false, attributes);
        if (!deleteNullValues) {
          final Iterator<Modification> iterator = mods.iterator();
          while (iterator.hasNext()) {
            final Modification m = iterator.next();
            if (m.getRawValues().length == 0) {
              iterator.remove();
            }
          }
        }

        HashSet<String> stripAttrs = null;
        for (final FieldInfo i : fieldMap.values()) {
          if (!i.includeInModify()) {
            if (stripAttrs == null) {
              stripAttrs = new HashSet<String>(10);
            }
            stripAttrs.add(toLowerCase(i.getAttributeName()));
          }
        }

        for (final GetterInfo i : getterMap.values()) {
          if (!i.includeInModify()) {
            if (stripAttrs == null) {
              stripAttrs = new HashSet<String>(10);
            }
            stripAttrs.add(toLowerCase(i.getAttributeName()));
          }
        }

        if (stripAttrs != null) {
          final Iterator<Modification> iterator = mods.iterator();
          while (iterator.hasNext()) {
            final Modification m = iterator.next();
            if (stripAttrs.contains(toLowerCase(m.getAttributeName()))) {
              iterator.remove();
            }
          }
        }

        return mods;
      } catch (final Exception e) {
        debugException(e);
      } finally {
        setDNAndEntryFields(o, originalEntry);
      }
    }

    final HashSet<String> attrSet;
    if ((attributes == null) || (attributes.length == 0)) {
      attrSet = null;
    } else {
      attrSet = new HashSet<String>(attributes.length);
      for (final String s : attributes) {
        attrSet.add(toLowerCase(s));
      }
    }

    final ArrayList<Modification> mods = new ArrayList<Modification>(5);

    for (final Map.Entry<String, FieldInfo> e : fieldMap.entrySet()) {
      final String attrName = toLowerCase(e.getKey());
      if ((attrSet != null) && (!attrSet.contains(attrName))) {
        continue;
      }

      final FieldInfo i = e.getValue();
      if (!i.includeInModify()) {
        continue;
      }

      final Attribute a = i.encode(o, false);
      if (a == null) {
        if (!deleteNullValues) {
          continue;
        }

        if ((originalEntry != null) && (!originalEntry.hasAttribute(attrName))) {
          continue;
        }

        mods.add(new Modification(ModificationType.REPLACE, i.getAttributeName()));
        continue;
      }

      if (originalEntry != null) {
        final Attribute originalAttr = originalEntry.getAttribute(attrName);
        if ((originalAttr != null) && originalAttr.equals(a)) {
          continue;
        }
      }

      mods.add(new Modification(ModificationType.REPLACE, i.getAttributeName(), a.getRawValues()));
    }

    for (final Map.Entry<String, GetterInfo> e : getterMap.entrySet()) {
      final String attrName = toLowerCase(e.getKey());
      if ((attrSet != null) && (!attrSet.contains(attrName))) {
        continue;
      }

      final GetterInfo i = e.getValue();
      if (!i.includeInModify()) {
        continue;
      }

      final Attribute a = i.encode(o);
      if (a == null) {
        if (!deleteNullValues) {
          continue;
        }

        if ((originalEntry != null) && (!originalEntry.hasAttribute(attrName))) {
          continue;
        }

        mods.add(new Modification(ModificationType.REPLACE, i.getAttributeName()));
        continue;
      }

      if (originalEntry != null) {
        final Attribute originalAttr = originalEntry.getAttribute(attrName);
        if ((originalAttr != null) && originalAttr.equals(a)) {
          continue;
        }
      }

      mods.add(new Modification(ModificationType.REPLACE, i.getAttributeName(), a.getRawValues()));
    }

    if (superclassHandler != null) {
      final List<Modification> superMods =
          superclassHandler.getModifications(o, deleteNullValues, attributes);
      final ArrayList<Modification> modsToAdd = new ArrayList<Modification>(superMods.size());
      for (final Modification sm : superMods) {
        boolean add = true;
        for (final Modification m : mods) {
          if (m.getAttributeName().equalsIgnoreCase(sm.getAttributeName())) {
            add = false;
            break;
          }
        }
        if (add) {
          modsToAdd.add(sm);
        }
      }
      mods.addAll(modsToAdd);
    }

    return Collections.unmodifiableList(mods);
  }
  public void buildTypeGraph() {
    Map<String, JarFile> openJarFiles = new HashMap<String, JarFile>();
    Map<String, File> openClassFiles = new HashMap<String, File>();
    // use global cache to load resource in/out of the same jar as the classes
    Set<String> resourceCacheSet = new HashSet<>();
    try {
      for (String path : pathsToScan) {
        File f = null;
        try {
          f = new File(path);
          if (!f.exists()
              || f.isDirectory()
              || (!f.getName().endsWith("jar") && !f.getName().endsWith("class"))) {
            continue;
          }
          if (GENERATED_CLASSES_JAR.equals(f.getName())) {
            continue;
          }
          if (f.getName().endsWith("class")) {
            typeGraph.addNode(f);
            openClassFiles.put(path, f);
          } else {
            JarFile jar = new JarFile(path);
            openJarFiles.put(path, jar);
            java.util.Enumeration<JarEntry> entriesEnum = jar.entries();
            while (entriesEnum.hasMoreElements()) {
              final java.util.jar.JarEntry jarEntry = entriesEnum.nextElement();
              String entryName = jarEntry.getName();
              if (jarEntry.isDirectory()) {
                continue;
              }
              if (entryName.endsWith("-javadoc.xml")) {
                try {
                  processJavadocXml(jar.getInputStream(jarEntry));
                  // break;
                } catch (Exception ex) {
                  LOG.warn("Cannot process javadoc {} : ", entryName, ex);
                }
              } else if (entryName.endsWith(".class")) {
                TypeGraph.TypeGraphVertex newNode = typeGraph.addNode(jarEntry, jar);
                // check if any visited resources belong to this type
                for (Iterator<String> iter = resourceCacheSet.iterator(); iter.hasNext(); ) {
                  String entry = iter.next();
                  if (entry.startsWith(entryName.substring(0, entryName.length() - 6))) {
                    newNode.setHasResource(true);
                    iter.remove();
                  }
                }
              } else {
                String className = entryName;
                boolean foundClass = false;
                // check if this resource belongs to any visited type
                while (className.contains("/")) {
                  className = className.substring(0, className.lastIndexOf('/'));
                  TypeGraph.TypeGraphVertex tgv = typeGraph.getNode(className.replace('/', '.'));
                  if (tgv != null) {
                    tgv.setHasResource(true);
                    foundClass = true;
                    break;
                  }
                }
                if (!foundClass) {
                  resourceCacheSet.add(entryName);
                }
              }
            }
          }
        } catch (IOException ex) {
          LOG.warn("Cannot process file {}", f, ex);
        }
      }

      typeGraph.trim();

      typeGraph.updatePortTypeInfoInTypeGraph(openJarFiles, openClassFiles);
    } finally {
      for (Entry<String, JarFile> entry : openJarFiles.entrySet()) {
        try {
          entry.getValue().close();
        } catch (IOException e) {
          DTThrowable.wrapIfChecked(e);
        }
      }
    }
  }