public String _range(String args[]) {
verifyCommand(args, _rangeHelp, _rangePattern, 2, 3);
Version version = null;
if (args.length >= 3) version = new Version(args[2]);
else {
String v = domain.getProperty("@");
if (v == null) return null;
version = new Version(v);
}
String spec = args[1];
Matcher m = RANGE_MASK.matcher(spec);
m.matches();
String floor = m.group(1);
String floorMask = m.group(2);
String ceilingMask = m.group(3);
String ceiling = m.group(4);
String left = version(version, floorMask);
String right = version(version, ceilingMask);
StringBuilder sb = new StringBuilder();
sb.append(floor);
sb.append(left);
sb.append(",");
sb.append(right);
sb.append(ceiling);
String s = sb.toString();
VersionRange vr = new VersionRange(s);
if (!(vr.includes(vr.getHigh()) || vr.includes(vr.getLow()))) {
domain.error(
"${range} macro created an invalid range %s from %s and mask %s", s, version, spec);
}
return sb.toString();
}
protected Map<String, String> getAttributes() {
if (attributes != null) {
return attributes;
}
attributes = new HashMap<String, String>();
matcher = ADDITIONAL_ATTRIBUTES_PATTERN.matcher(firstLine);
if (matcher.find()) {
String s;
Matcher attributeMatcher;
s = matcher.group(2);
attributeMatcher = ADDITIONAL_ATTRIBUTE_PATTERN.matcher(s);
while (attributeMatcher.find()) {
String key;
String value;
key = attributeMatcher.group(1);
value = attributeMatcher.group(2);
attributes.put(key.toLowerCase(Locale.ENGLISH), value);
}
}
return attributes;
}
private static String expand(String str) {
if (str == null) {
return null;
}
StringBuilder result = new StringBuilder();
Pattern re = Pattern.compile("^(.*?)\\$\\{([^}]*)\\}(.*)");
while (true) {
Matcher matcher = re.matcher(str);
if (matcher.matches()) {
result.append(matcher.group(1));
String property = matcher.group(2);
if (property.equals("/")) {
property = "file.separator";
}
String value = System.getProperty(property);
if (value != null) {
result.append(value);
}
str = matcher.group(3);
} else {
result.append(str);
break;
}
}
return result.toString();
}
public static void main(String[] args) throws IOException {
// Get input html
StringBuffer sb = new StringBuffer();
BufferedReader in = new BufferedReader(new InputStreamReader(System.in));
for (String str = in.readLine(); str != null; str = in.readLine()) {
sb.append("\n" + str);
}
String html = sb.toString();
// Match all the questions
Matcher matcher =
Pattern.compile(
"<\\s*div\\s+class\\s*=\\s*\"question-summary\"\\s*id\\s*=\\s*\"question-summary-(?<id>\\d+)\"\\s*>"
+ ".*?<\\s*div\\s+class\\s*=\\s*\"summary\"\\s*>"
+ ".*?<\\s*a\\s+.*?class\\s*=\\s*\"question-hyperlink\"\\s*>"
+ "(?<title>.*?)"
+ "</\\s*a\\s*>.*?<\\s*div\\s+class\\s*=\\s*\"user-action-time\"\\s*>"
+ ".*?<\\s*span\\s+.*?>(?<time>.*?)</\\s*span\\s*>",
Pattern.CASE_INSENSITIVE | Pattern.DOTALL)
.matcher(html);
// Output the information
while (matcher.find()) {
String id = matcher.group("id");
String title = matcher.group("title");
String time = matcher.group("time");
System.out.println(id + ";" + title + ";" + time);
}
}
/**
* Get dependencies of a source file.
*
* @param path The canonical path of source file.
* @return Path of dependencies.
*/
private ArrayList<String> getDependencies(String path) {
if (!dependenceMap.containsKey(path)) {
ArrayList<String> dependencies = new ArrayList<String>();
Matcher m = PATTERN_REQUIRE.matcher(read(path, charset));
while (m.find()) {
// Decide which root path to use.
// Path wrapped in <> is related to root path.
// Path wrapped in "" is related to parent folder of the source file.
String root = null;
if (m.group(1).equals("<")) {
root = this.root;
} else {
root = new File(path).getParent();
}
// Get path of required file.
String required = m.group(2);
File f = new File(root, required);
if (f.exists()) {
dependencies.add(canonize(f));
} else {
App.exit("Cannot find required file " + required + " in " + path);
}
}
dependenceMap.put(path, dependencies);
}
return dependenceMap.get(path);
}
private InstanceList readFile() throws IOException {
String NL = System.getProperty("line.separator");
Scanner scanner = new Scanner(new FileInputStream(fileName), encoding);
ArrayList<Pipe> pipeList = new ArrayList<Pipe>();
pipeList.add(new CharSequence2TokenSequence(Pattern.compile("\\p{L}\\p{L}+")));
pipeList.add(new TokenSequence2FeatureSequence());
InstanceList testing = new InstanceList(new SerialPipes(pipeList));
try {
while (scanner.hasNextLine()) {
String text = scanner.nextLine();
text = text.replaceAll("\\x0d", "");
Pattern patten = Pattern.compile("^(.*?),(.*?),(.*)$");
Matcher matcher = patten.matcher(text);
if (matcher.find()) {
docIds.add(matcher.group(1));
testing.addThruPipe(new Instance(matcher.group(3), null, "test instance", null));
}
}
} finally {
scanner.close();
}
return testing;
}
public void testBaseUrlPath() throws Exception {
sau1 = setupSimAu(simAuConfig(tempDirPath));
createContent(sau1);
crawlContent(sau1);
CachedUrlSet cus1 = sau1.getAuCachedUrlSet();
tempDirPath2 = getTempDir().getAbsolutePath() + File.separator;
Configuration config2 = simAuConfig(tempDirPath2);
config2.put("base_url", "http://anotherhost.org/some/path/");
SimulatedArchivalUnit sau2 = setupSimAu(config2);
createContent(sau2);
crawlContent(sau2);
CachedUrlSet cus2 = sau1.getAuCachedUrlSet();
List urls1 = auUrls(sau1);
List urls2 = auUrls(sau2);
Pattern pat1 = Pattern.compile("http://www\\.example\\.com(/.*)$");
Pattern pat2 = Pattern.compile("http://anotherhost\\.org/some/path(/.*)$");
List<String> l1 = auUrls(sau1);
List<String> l2 = auUrls(sau2);
assertEquals(l1.size(), l2.size());
for (int ix = 0; ix < l1.size(); ix++) {
Matcher m1 = pat1.matcher(l1.get(ix));
assertTrue(m1.matches());
Matcher m2 = pat2.matcher(l2.get(ix));
assertTrue(m2.matches());
assertEquals(m1.group(1), m2.group(1));
}
}
public Coords(String entry) {
Matcher m = coordsPattern.matcher(entry);
if (!m.matches()) {
throw new IllegalArgumentException(entry);
}
chrom = m.group(1);
start = Integer.parseInt(m.group(2));
end = Integer.parseInt(m.group(3));
strand = m.group(4).charAt(0);
}
public static int[] decodePrimerName(String pname) {
Matcher m = primerNamePattern.matcher(pname);
if (!m.matches()) {
throw new IllegalArgumentException(pname);
}
int[] a = new int[3];
a[0] = Integer.parseInt(m.group(1));
a[1] = Integer.parseInt(m.group(2));
a[2] = Integer.parseInt(m.group(3));
return a;
}
/**
* Converts a colour from #rrggbb to Java Color object.
*
* @param rgb String e.g. #ff00ee
* @return Colour
* @throws IllegalArgumentException If colour string is not valid
*/
protected Color convertRgb(String rgb) throws IllegalArgumentException {
// Get colour parameter
Matcher m = REGEX_RGB.matcher(rgb);
if (!m.matches()) {
throw new IllegalArgumentException(
"MathML invalid colour '" + rgb + "'; expected #rrggbb (lower-case)");
}
return new Color(
Integer.parseInt(m.group(1), 16),
Integer.parseInt(m.group(2), 16),
Integer.parseInt(m.group(3), 16));
}
public static String removePrimerLR(String pname) {
Matcher m = primerLRPattern.matcher(pname);
if (!m.matches()) {
throw new IllegalArgumentException(pname);
}
return m.group(1);
}
/**
* Takes a line and looks for an archive request tag. If one is found, the information from the
* tag is returned as an <CODE>ArchiveRequest</CODE>. If a tag is found, the data in the tag is
* stored in the <CODE>HashMap</CODE> provided.
*
* @param currentLine The line in which to look for the archive tag.
* @param group The <CODE>ArchiveGroup</CODE> to which to add the <CODE>ArchiveRequest</CODE>. Can
* be <CODE>null</CODE>.
* @param template The <CODE>Template</CODE> to which the <CODE>ArchiveRequest</CODE> belongs.
* @return The archive request tag data as an instance of <CODE>ArchiveRequest</CODE>, <CODE>null
* </CODE> if the line passed in does not contain an arFile tag.
*/
private ArchiveRequest parseArchiveRequestTag(
String currentLine, ArchiveGroup group, Template template) {
ArchiveRequest archiveTag;
Matcher currentMatcher = archiveRequestPattern.matcher(currentLine);
if (currentMatcher.find()) {
String fileName = currentMatcher.group(1);
archiveTag = template.getArchiveRequest(fileName);
if (archiveTag == null) {
archiveTag = new ArchiveRequest(fileName);
template.addArchiveRequest(archiveTag);
}
if (group != null) {
// Creating a new request object because the requests
// in the groups flagged as not in database will mean the
// group - request association is not in database. Requests
// in the archiveRequests map flagged as not in database
// means the request record is not there.
String requestFileName = archiveTag.getFileName();
String requestFileLocation = archiveTag.getFileLocation();
ArchiveRequest groupRequest = new ArchiveRequest(requestFileLocation, requestFileName);
group.addArchiveRequest(groupRequest);
}
} else archiveTag = null;
return archiveTag;
}
public static String getChrom(String chromName) {
Matcher m = chromPattern.matcher(chromName);
if (!m.matches()) {
return chromName;
}
return m.group(1);
}
public String getArtifactIdFromCoord(String coord) {
Matcher m = COORD_P.matcher(coord);
if (m.matches()) {
return m.group(2);
} else {
return null;
}
}
/**
* Takes a line and looks for an archive tag. If one is found, the information from the tag is
* returned as a <CODE>Signal</CODE>. If a signal ID is given in the tag, the data in the tag is
* stored in the <CODE>HashMap</CODE> provided.
*
* @param currentLine The line in which to look for the archive tag.
* @return The archive tag data as an instance of <CODE>Signal</CODE>, <CODE>null</CODE> if the
* line passed in does not contain an arReq tag.
*/
private Signal parseArchiveTag(String currentLine) {
Signal archiveTag;
Matcher currentMatcher = archivePattern.matcher(currentLine);
if (currentMatcher.find()) {
archiveTag = new Signal(currentMatcher.group(1));
String frequency = currentMatcher.group(2);
BigDecimal frequencyValue;
if (frequency == null) frequencyValue = null;
else frequencyValue = new BigDecimal(frequency);
archiveTag.setArchiveFrequency(frequencyValue);
String type = currentMatcher.group(3);
if (type == null) type = "Monitor";
archiveTag.setArchiveType(type);
archiveTag.setArchiveIndicator("Y");
} else archiveTag = null;
return archiveTag;
}
private void addNonTerminal(String EBNF) {
String p = "<([\\w-]+)>[\\s]*::=(" + "([\\s]*(<[\\w-]+>|(\"[^\"]*\")|[|\\[\\]{}])" + ")+)";
Matcher m = Pattern.compile(p).matcher(EBNF);
m.find();
NonTerminal nt = new NonTerminal(m.group(1));
List<? extends EBNFBranch> branches = EBNFBranch.getBranches(m.group(2));
assert (branches.size() > 0);
if (nonTerminals.size() == 0) {
startSymbol = nt;
}
nonTerminals.put(nt, branches);
}
public synchronized String format(String message) {
Matcher matcher = variablePattern.matcher(message);
while (matcher.find()) {
String variable = matcher.group();
variable = variable.substring(1);
if (variable.startsWith("{") && variable.endsWith("}"))
variable = variable.substring(1, variable.length() - 1);
String value = variables.get(variable);
if (value == null) value = "";
message =
message.replaceFirst(Pattern.quote(matcher.group()), Matcher.quoteReplacement(value));
}
matcher = colorPattern.matcher(message);
while (matcher.find())
message =
message.substring(0, matcher.start()) + "\247" + message.substring(matcher.end() - 1);
return message;
}
public BasicSpellChecker(String file) throws IOException {
BufferedReader in = new BufferedReader(new FileReader(file));
Pattern p = Pattern.compile("\\w+");
for (String temp = ""; temp != null; temp = in.readLine()) {
Matcher m = p.matcher(temp.toLowerCase());
while (m.find())
nWords.put((temp = m.group()), nWords.containsKey(temp) ? nWords.get(temp) + 1 : 1);
}
in.close();
}
private void buildXmlPropertiesFile() {
System.out.println(
"\nBuilding and checking your pipeline properties file -> " + truncPipePropFile);
StringBuilder toPrint = new StringBuilder();
// walk through the prop file
String[] prop = IO.loadFileIntoStringArray(truncPipePropFile);
Pattern val = Pattern.compile("(<entry key.+>)([D|A|B].*)</entry>");
boolean missingFile = false;
for (String s : prop) {
// does it match a file needing prepending? Data/, Apps/, Bed/
Matcher mat = val.matcher(s);
if (mat.matches()) {
File test = new File(referenceDir, mat.group(2));
if (test.exists()) {
System.out.println("Found\t" + test);
toPrint.append(mat.group(1));
toPrint.append(test.toString());
toPrint.append("</entry>");
} else {
System.out.println("Misssing\t" + test);
missingFile = true;
}
}
// threads?
else if (s.contains("threads"))
toPrint.append("<entry key=\"threads\">" + threads + "</entry>");
// nope just save it and add a line return
else toPrint.append(s);
toPrint.append("\n");
}
// anything missing? if so exit
if (missingFile)
Misc.printErrAndExit(
"\nFailed to find all of the files in your properties file, see above.\n");
// OK, write it out
completePipelinePropFile = new File(outputDirectory, "pipelineProperties.xml");
if (IO.writeString(toPrint.toString(), completePipelinePropFile) == false)
Misc.printErrAndExit("Problem writing -> " + truncPipePropFile);
}
protected boolean shouldIgnoreBCCAddress(String address) {
MilterServerService milterService = Config.getConfig().getMilterServerService();
List<String> ignoreAddresses = milterService.getIgnoreBCCAddress();
Matcher m = headerPattern2.matcher(address.toLowerCase(Locale.ENGLISH).trim());
if (m.matches()) {
String mailAddress = m.group(1);
for (String ignoreAddress : ignoreAddresses) {
if (ignoreAddress.equalsIgnoreCase(mailAddress)) return true;
}
} else {
m = headerPattern3.matcher(address.toLowerCase(Locale.ENGLISH).trim());
if (m.matches()) {
String mailAddress = m.group(1);
for (String ignoreAddress : ignoreAddresses) {
if (ignoreAddress.equalsIgnoreCase(mailAddress)) return true;
}
}
}
return false;
}
public String getResult() {
if (result != null) {
return result;
}
matcher = RESULT_PATTERN.matcher(firstLine);
if (matcher.find()) {
result = matcher.group(1);
}
return result;
}
public int getStatus() {
if (status != null) {
return status;
}
matcher = STATUS_PATTERN.matcher(firstLine);
if (matcher.find()) {
status = Integer.parseInt(matcher.group(1));
}
return status;
}
public static void loadPermissions(URL url) throws IOException, PermissionParseException {
BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream()));
String line;
Pattern ignore = Pattern.compile("^\\s*(//.*)?$");
Pattern valid =
Pattern.compile("^\\s*permission\\s+(\\S+)" + "(\\s+\"([^\"]*)\"(,\\s+\"([^\"]*)\")?)?;$");
Set<Permission> perms = new HashSet<Permission>();
while ((line = in.readLine()) != null) {
if (ignore.matcher(line).matches()) {
continue;
}
Matcher matcher = valid.matcher(line);
if (!matcher.matches()) {
throw new PermissionParseException("invalid syntax: " + line);
}
int nGroups = matcher.groupCount();
String type = matcher.group(1);
String name = expand(nGroups >= 3 ? matcher.group(3) : null);
String actions = expand(nGroups >= 5 ? matcher.group(5) : null);
try {
Permission perm = getPermission(type, name, actions);
perms.add(perm);
} catch (Throwable e) {
String message =
String.format(
"could not instantiate permission: " + "type=%s name=%s actions=",
type, name, actions);
throw new PermissionParseException(message, e);
}
}
in.close();
permSet.addAll(perms);
}
private static List<String> loadAccounts(String fileName) {
List<String> accounts = new ArrayList<String>();
try {
Pattern pattern = Pattern.compile("[\\w]{1,16}");
BufferedReader reader = new BufferedReader(new FileReader(new File(fileName)));
String line;
while ((line = reader.readLine()) != null) {
Matcher matcher = pattern.matcher(line);
if (!matcher.find()) continue;
String username = matcher.group();
if (!matcher.find()) continue;
String password = matcher.group();
accounts.add(username + ":" + password);
}
reader.close();
} catch (Exception exception) {
throw new RuntimeException(exception);
}
System.out.println("Loaded " + accounts.size() + " accounts.");
return accounts;
}
void findRemoveDirectives(boolean clean) {
// if ( clean ) editor.startCompoundEdit();
Sketch sketch = editor.getSketch();
for (int i = 0; i < sketch.getCodeCount(); i++) {
SketchCode code = sketch.getCode(i);
String program = code.getProgram();
StringBuffer buffer = new StringBuffer();
Matcher m = pjsPattern.matcher(program);
while (m.find()) {
String mm = m.group();
// TODO this urgently needs tests ..
/* remove framing */
mm = mm.replaceAll("^\\/\\*\\s*@pjs", "").replaceAll("\\s*\\*\\/\\s*$", "");
/* fix multiline nice formatting */
mm = mm.replaceAll("[\\s]*([^;\\s\\n\\r]+)[\\s]*,[\\s]*[\\n\\r]+", "$1,");
/* fix multiline version without semicolons */
mm = mm.replaceAll("[\\s]*([^;\\s\\n\\r]+)[\\s]*[\\n\\r]+", "$1;");
mm = mm.replaceAll("\n", " ").replaceAll("\r", " ");
// System.out.println(mm);
if (clean) {
m.appendReplacement(buffer, "");
} else {
String[] directives = mm.split(";");
for (String d : directives) {
// System.out.println(d);
parseDirective(d);
}
}
}
if (clean) {
m.appendTail(buffer);
// TODO: not working!
code.setProgram(buffer.toString());
code.setModified(true);
}
}
if (clean) {
// editor.stopCompoundEdit();
editor.setText(sketch.getCurrentCode().getProgram());
sketch.setModified(false);
sketch.setModified(true);
}
}
protected static String getMethodName(Test test) {
String className;
String desc = test.toString();
Matcher matcher = methodpattern.matcher(desc);
if (matcher.matches()) {
className = matcher.group(1);
} else {
className = desc;
}
return className;
}
protected void getDimensionsFromLogFile(BufferedReader reader, PicText text) {
if (reader == null) {
return;
}
String line = ""; // il rale si j'initialise pas ...
boolean finished = false;
while (!finished) {
try {
line = reader.readLine();
} catch (IOException ioex) {
ioex.printStackTrace();
return;
}
if (line == null) {
System.out.println("Size of text not found in log file...");
return;
}
System.out.println(line);
Matcher matcher = LogFilePattern.matcher(line);
if (line != null && matcher.find()) {
System.out.println("FOUND :" + line);
finished = true;
try {
text.setDimensions(
0.3515 * Double.parseDouble(matcher.group(1)), // height, pt->mm (1pt=0.3515 mm)
0.3515 * Double.parseDouble(matcher.group(2)), // width
0.3515 * Double.parseDouble(matcher.group(3))); // depth
areDimensionsComputed = true;
} catch (NumberFormatException e) {
System.out.println("Logfile number format problem: $line" + e.getMessage());
} catch (IndexOutOfBoundsException e) {
System.out.println("Logfile regexp problem: $line" + e.getMessage());
}
}
}
return;
}
/**
* Handles info messages resulting from a query execution.
*
* @param msg info message
* @return true if error was found
*/
private boolean error(final String msg) {
final String line = msg.replaceAll("[\\r\\n].*", "");
Matcher m = XQERROR.matcher(line);
int el, ec = 2;
if (!m.matches()) {
m = XMLERROR.matcher(line);
if (!m.matches()) return true;
el = Integer.parseInt(m.group(1));
errFile = getEditor().file.path();
} else {
el = Integer.parseInt(m.group(1));
ec = Integer.parseInt(m.group(2));
errFile = m.group(3);
}
final EditorArea edit = find(IO.get(errFile), false);
if (edit == null) return true;
// find approximate error position
final int ll = edit.last.length;
int ep = ll;
for (int e = 1, l = 1, c = 1; e < ll; ++c, e += cl(edit.last, e)) {
if (l > el || l == el && c == ec) {
ep = e;
break;
}
if (edit.last[e] == '\n') {
++l;
c = 0;
}
}
if (ep < ll && Character.isLetterOrDigit(cp(edit.last, ep))) {
while (ep > 0 && Character.isLetterOrDigit(cp(edit.last, ep - 1))) ep--;
}
edit.error(ep);
errPos = ep;
return true;
}
/**
* Takes a line and looks for an archive group tag. If one is found, the information from the tag
* is returned as an <CODE>ArchiveGroup</CODE>. If a tag is found, the data in the tag is stored
* in the <CODE>HashMap</CODE> provided.
*
* @param currentLine The line in which to look for the archive tag.
* @param template The <CODE>Template</CODE> to which the <CODE>ArchiveGroup</CODE> belongs.
* @return The archive request tag data as an instance of <CODE>ArchiveGroup</CODE>, <CODE>null
* </CODE> if the line passed in does not contain an arFile tag.
*/
private ArchiveGroup parseArchiveGroupTag(String currentLine, Template template) {
ArchiveGroup archiveTag;
Matcher currentMatcher = archiveRequestPattern.matcher(currentLine);
if (currentMatcher.find()) {
String fileName = currentMatcher.group(1);
archiveTag = template.getArchiveGroup(fileName);
if (archiveTag == null) {
File groupFile = new File(fileName);
archiveTag = new ArchiveGroup(groupFile.getParent(), groupFile.getName());
template.addArchiveGroup(archiveTag);
}
} else archiveTag = null;
return archiveTag;
}
public JilterStatus header(String headerf, String headerv) {
logger.debug("jilter header {name='" + headerf + "',value='" + headerv + "'}");
StringBuffer header = new StringBuffer();
header.append(headerf);
header.append(": ");
header.append(headerv);
header.append("\n");
try {
bos.write(header.toString().getBytes());
} catch (IOException io) {
logger.error("jilter failed to write header field", io);
}
Matcher m = headerPattern1.matcher(headerf.toLowerCase(Locale.ENGLISH).trim());
if (m.matches()) {
logger.debug("jilter found to/bcc/cc header");
String[] addresses = headerv.split(",");
for (int i = 0; i < addresses.length; i++) {
includeBCC = includeBCC | rcpts.remove(addresses[i].toLowerCase(Locale.ENGLISH).trim());
logger.debug("jilter del recipient {recipient='" + addresses[i] + "'}");
m = headerPattern2.matcher(addresses[i].toLowerCase(Locale.ENGLISH).trim());
if (m.matches()) {
String mailAddress = m.group(1);
includeBCC = includeBCC | rcpts.remove(mailAddress);
logger.debug("jilter del recipient {recipient='" + mailAddress + "'}");
} else {
m = headerPattern3.matcher(addresses[i].toLowerCase(Locale.ENGLISH).trim());
if (m.matches()) {
String mailAddress = m.group(1);
includeBCC = includeBCC | rcpts.remove(mailAddress);
logger.debug("jilter del recipient {recipient='" + mailAddress + "'}");
}
}
}
}
return JilterStatus.SMFIS_CONTINUE;
}