@Before
public void setUp() {
System.out.println("--------------- setUp() ParameterisedGroupTest");
cell = new OneSegment("Simple");
d1 =
cell.addDendriticSegment(
1, "d1", new Point3f(10, 0, 0), cell.getFirstSomaSegment(), 1, "Sec1", false);
d2 = cell.addDendriticSegment(2, "d2", new Point3f(20, 0, 0), d1, 1, "Sec2", false);
d3 = cell.addDendriticSegment(7, "d3", new Point3f(20, 10, 0), d2, 1, "Sec3", false);
d3.getSection().setStartRadius(3);
d1.getSection().setNumberInternalDivisions(4);
d2.getSection().setNumberInternalDivisions(3);
d3.getSection().setNumberInternalDivisions(5);
d3.getSection().addToGroup(tipSection);
pg1 =
new ParameterisedGroup(
"ZeroToOne",
Section.DENDRITIC_GROUP,
Metric.PATH_LENGTH_FROM_ROOT,
ProximalPref.MOST_PROX_AT_0,
DistalPref.MOST_DIST_AT_1,
"p1");
pg2 =
new ParameterisedGroup(
"StartToEnd",
Section.DENDRITIC_GROUP,
Metric.PATH_LENGTH_FROM_ROOT,
ProximalPref.NO_TRANSLATION,
DistalPref.NO_NORMALISATION,
"p2");
pg3 =
new ParameterisedGroup(
"TipZeroToOne",
tipSection,
Metric.PATH_LENGTH_FROM_ROOT,
ProximalPref.MOST_PROX_AT_0,
DistalPref.MOST_DIST_AT_1,
"p3");
pg4 =
new ParameterisedGroup(
"TipToEnd",
tipSection,
Metric.PATH_LENGTH_FROM_ROOT,
ProximalPref.MOST_PROX_AT_0,
DistalPref.NO_NORMALISATION,
"p4");
pg5 =
new ParameterisedGroup(
"TipToEnd_PathFromRoot",
tipSection,
Metric.PATH_LENGTH_FROM_ROOT,
ProximalPref.NO_TRANSLATION,
DistalPref.NO_NORMALISATION,
"p5");
/*
pg5 = new ParameterisedGroup("3DDistZeroToOne",
Section.ALL,
Metric.THREE_D_RADIAL_POSITION,
ProximalPref.MOST_PROX_AT_0,
DistalPref.MOST_DIST_AT_1);*/
}
