// TODO
@SuppressWarnings("unchecked")
@Override
public N join() {
PixelCube<E, BaseIndex> pc = new PixelCube<E, BaseIndex>(dim, dummy);
pc.setIndexing(BASE_INDEXING);
pc.one();
pc.setIterationPattern(IP_SINGLE + IP_DIR + IP_FWD);
pc.setDir(new int[] {0, 1});
PixelDirForwardIterator<E> iter = (PixelDirForwardIterator<E>) pc.iterator();
PixelDirForwardIterator<E> iter2 = (PixelDirForwardIterator<E>) pc.iterator();
for (int i = 0; i < nKernels; i++) {
System.out.println("iter: " + i);
for (int u = 0; u < ndim; u++) {
int[] dir = {0, u + 1}; // direction
if (u == ndim - 1) dir = new int[] {1, 0};
iter.setDirection(dir);
iter2.setDirection(dir);
int p = 0;
Access<?> kaccess;
try {
kaccess = Access.rawAccess(kernels[i], null);
final int len = kaccess.size()[0];
System.out.println(dim[u] + ",");
while (iter.hasNext()) {
float elem = iter.next().floatValue();
elem *= kaccess.elementFloat(p);
System.out.print(elem + ",");
iter2.putFloat(elem);
iter2.inc();
p++;
p = p % len;
}
iter.reset();
iter2.reset();
System.out.println();
} catch (UnsupportedTypeException e) {
// TODO Auto-generated catch block
e.printStackTrace();
return null;
} // end catch
} // end for
} // end for
// System.out.println(pc);
return (N) pc.getAccess().getArray();
} //
/** @param args */
public static void main(String[] args) {
final int[] dims = {50, 30};
final int n = 1500;
final short[] short_pixels = Util.rampShort(n, 0);
// final int[] int_pixels=Util.rampInt(n,0);
final float[] float_pixels = Util.rampFloat(n, 0);
final short[] labels = {0, 1, 2};
final int[] borders = {0, 10, 200, 1000};
final float[] flabels = {0, 1, 2};
final float[] fborders = {0.0f, 10, 200, 1000};
PixelCube<Short, BaseIndex> pci = new PixelCube<Short, BaseIndex>(dims, short_pixels);
pci.setIterationPattern(IP_FWD + IP_SINGLE);
pci.setIndexing(BASE_INDEXING);
PixelCube<Short, BaseIndex> outc = (PixelCube<Short, BaseIndex>) pci.clone();
RasterForwardIterator<Short> in = (RasterForwardIterator<Short>) pci.iterator();
RasterForwardIterator<Short> out = (RasterForwardIterator<Short>) outc.iterator();
Labeling<Short> labeling = new Labeling<Short>(labels, borders);
labeling.setIO(in, out);
labeling.run();
new ImageJ();
PixLib plib = new PixLib();
ImagePlus imp1 = null;
try {
imp1 = plib.imageFrom("test", pci);
} catch (UnsupportedTypeException e2) {
// TODO Auto-generated catch block
e2.printStackTrace();
}
imp1.show();
ImagePlus imp2 = null;
try {
imp2 = plib.imageFrom("thresholded", outc);
} catch (UnsupportedTypeException e1) {
// TODO Auto-generated catch block
e1.printStackTrace();
}
imp2.show();
PixelCube<Float, BaseIndex> pcif = new PixelCube<Float, BaseIndex>(dims, float_pixels);
pcif.setIterationPattern(IP_FWD + IP_SINGLE);
pcif.setIndexing(BASE_INDEXING);
PixelCube<Float, BaseIndex> outcf = (PixelCube<Float, BaseIndex>) pcif.clone();
RasterForwardIterator<Float> inf = (RasterForwardIterator<Float>) pcif.iterator();
RasterForwardIterator<Float> outf = (RasterForwardIterator<Float>) outcf.iterator();
Labeling<Float> labelingf = new Labeling<Float>(flabels, fborders);
labelingf.setIO(inf, outf);
Float elem = Float.valueOf(3.0f);
System.out.println(labelingf.mapFloat(elem).getClass());
labelingf.run();
// PixLib plibf=new PixLib();
ImagePlus imp3 = null;
try {
imp3 = plib.imageFrom("test", pcif);
} catch (UnsupportedTypeException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
imp3.show();
ImagePlus imp4 = null;
try {
imp4 = plib.imageFrom("thresholded", outcf);
} catch (UnsupportedTypeException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
imp4.show();
}