public double[] fitfunc(double[] fitparams) {
Bindings b = engine.createBindings();
for (int i = 0; i < 10; i++) b.put("P" + (i + 1), fitparams[i]);
/*String script1="P1="+fitparams[0]+"; "+
"P2="+fitparams[1]+"; "+
"P3="+fitparams[2]+"; "+
"P4="+fitparams[3]+"; "+
"P5="+fitparams[4]+"; "+
"P6="+fitparams[5]+"; "+
"P7="+fitparams[6]+"; "+
"P8="+fitparams[7]+"; "+
"P9="+fitparams[8]+"; "+
"P10="+fitparams[9]+"; "+
exdef+"; x=";
String script2="; retval="+function+";";*/
try {
double[] temp = new double[tempx.length];
for (int i = 0; i < tempx.length; i++) {
// temp[i]=((Double)engine.eval(script1+(double)tempx[i]+script2)).doubleValue();
b.put("x", tempx[i]);
b.put("y", tempdata[i]);
temp[i] = (Double) cs.eval(b);
}
return temp;
} catch (Exception e) {
IJ.log(e.getMessage());
return null;
}
}
boolean init_functions() {
GenericDialog gd = new GenericDialog("Fitting Options");
gd.addStringField("Extra Definitions", exdef, 50);
gd.addCheckbox("Weight Using Plot Errors", false);
gd.addStringField("Weighting Equation (y is for data)", weightfunction, 50);
gd.addStringField("Fit_Equation", function, 50);
gd.showDialog();
if (gd.wasCanceled()) {
return false;
}
exdef = gd.getNextString();
boolean errweights = gd.getNextBoolean();
weightfunction = gd.getNextString();
function = gd.getNextString();
// first initialize the weights
weights = new float[tempdata.length];
if (errweights
|| weightfunction.equals("")
|| weightfunction == null
|| weightfunction == "1.0") {
if (errweights) {
for (int i = 0; i < tempdata.length; i++) weights[i] = 1.0f / (errs[i] * errs[i]);
} else {
for (int i = 0; i < tempdata.length; i++) weights[i] = 1.0f;
}
} else {
for (int i = 0; i < tempdata.length; i++) {
String script =
"y =" + tempdata[i] + "; " + "x =" + tempx[i] + "; " + "retval=" + weightfunction + ";";
Double temp = new Double(0.0);
try {
temp = (Double) engine.eval(script);
} catch (Exception e) {
IJ.log(e.getMessage());
}
if (!(temp.isInfinite() || temp.isNaN())) {
weights[i] = temp.floatValue();
}
}
}
// now compile the function script
try {
String script1 = exdef + "; retval=" + function + ";";
cs = ce.compile(script1);
} catch (Exception e) {
IJ.log(e.toString());
return false;
}
return true;
}
public void run(String arg) {
boolean display = false;
File test = new File(arg);
display = !test.exists();
OpenDialog od = new OpenDialog("Open mkt file...", arg);
if (od != null) {
String file = od.getFileName();
if (file == null) return;
String directory = od.getDirectory();
directory = directory.replace('\\', '/'); // Windows safe
if (!directory.endsWith("/")) directory += "/";
arg = directory + file;
}
try {
FileProjectionSource fileSource = new MKTProjectionSource();
fileSource.initStream(arg);
ImagePlusDataSink sink = new ImagePlusDataSink();
Grid2D imp = fileSource.getNextProjection();
int i = 0;
while (imp != null) {
sink.process(imp, i);
i++;
imp = fileSource.getNextProjection();
}
sink.close();
setStack(ImageUtil.wrapGrid3D(sink.getResult(), "").getStack());
setTitle(new File(arg).getName());
fileSource.close();
if (display) show();
} catch (IOException e) {
// TODO Auto-generated catch block
e.printStackTrace();
} catch (Exception e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}