@Override
public synchronized void processOnlineResult(String filter, Element result) {
if (isRequestCancelled) return;
PluginRepositoryLoader.waitBasicLoaded();
if (isRequestCancelled) return;
for (Element plugin : XMLUtil.getElements(result, "plugin")) {
if (isRequestCancelled) {
if (SBProvider.DEBUG) System.out.println(this.getName() + ": request cancelled");
return;
}
String name = XMLUtil.getElementValue(plugin, "name", "");
String className = XMLUtil.getElementValue(plugin, "classname", "");
String str = XMLUtil.getElementValue(plugin, "string", "");
if (SBProvider.DEBUG) System.out.println(className);
if ((StringUtil.isEmpty(name) || !name.toLowerCase().contains(filter.toLowerCase()))
&& (StringUtil.isEmpty(str)
|| !str.toLowerCase().contains(filter.toLowerCase())
|| StringUtil.isEmpty(className))) continue;
final PluginDescriptor pd = PluginRepositoryLoader.getPlugin(className);
if (pd == null) {
if (SBProvider.DEBUG) System.out.println(className + " not found.");
} else if (PluginLoader.getPlugin(className) != null) {
if (SBProvider.DEBUG) System.out.println(pd.getClassName() + ": already exists.");
} else {
pd.loadAll();
for (ProviderListener l : getListeners()) l.updateDisplay();
SBLink link = new LinkOPlugin(this, pd, str, filter);
if (SBProvider.DEBUG) System.out.println(name + " added");
elements.add(link);
}
}
if (isRequestCancelled) return;
loaded();
}
public String getEntryAsName(int index, int maxlen, boolean tailLimit) {
final ArrayList<String> filenames = getEntry(index);
if ((filenames == null) || (filenames.size() == 0)) return "";
if (filenames.size() == 1) return StringUtil.limit(filenames.get(0), maxlen, tailLimit);
String result = filenames.get(0);
for (int i = 1; i < filenames.size(); i++)
result += ", " + FileUtil.getFileName(filenames.get(i));
return "[" + StringUtil.limit(result, maxlen, tailLimit) + "]";
}
@Override
protected boolean listConstains(SBLink link) {
if (!elements.isEmpty()) {
LinkOPlugin plink = (LinkOPlugin) link;
for (SBLink p : elements) {
if (StringUtil.equals(((LinkOPlugin) p).pd.getClassName(), plink.pd.getClassName()))
return true;
}
}
return false;
}
/**
* Create a new externalizable panel.
*
* @param title title for the associated frame.
* @param key save key, used for WindowPositionSaver.<br>
* Set to null or empty string disable parameter saving.
* @param defLoc the default location for the frame (externalized state)
* @param defDim the default dimension for the frame (externalized state)
*/
public ExternalizablePanel(String title, String key, Point defLoc, Dimension defDim) {
super();
frame = new Frame(title);
parent = null;
internalizationAutorized = true;
externalizationAutorized = true;
closed = false;
// use window position saver with default parameters
if (!StringUtil.isEmpty(key))
positionSaver = new WindowPositionSaver(this, "frame/" + key, defLoc, defDim);
else positionSaver = null;
}
void updateGui() {
final Font sysFont = pluginAuthorLabel.getFont();
final Image img = plugin.getImage();
final String description = plugin.getDescription();
final String changesLog = plugin.getChangeLog();
final String author = plugin.getAuthor();
final String email = plugin.getEmail();
final String web = plugin.getWeb();
if (img == null) pluginImage.setImage(PluginDescriptor.DEFAULT_IMAGE);
else pluginImage.setImage(img);
if (StringUtil.isEmpty(description)) pluginDescriptionText.setText("No description");
else {
if (StringUtil.containHtmlCR(description))
pluginDescriptionText.setText(StringUtil.removeCR(description));
else pluginDescriptionText.setText(StringUtil.toHtmlCR(description));
pluginDescriptionText.setCaretPosition(0);
}
ComponentUtil.setJTextPaneFont(pluginDescriptionText, sysFont, Color.black);
if (StringUtil.isEmpty(changesLog)) pluginChangeLogText.setText("---");
else {
pluginChangeLogText.setText(StringUtil.toHtmlCR(changesLog));
pluginChangeLogText.setCaretPosition(0);
}
ComponentUtil.setJTextPaneFont(
pluginChangeLogText, new Font("courier", Font.PLAIN, 11), Color.black);
if (StringUtil.isEmpty(author)) pluginAuthorLabel.setText("---");
else pluginAuthorLabel.setText(author);
if (StringUtil.isEmpty(email)) pluginEmailLabel.setText("---");
else pluginEmailLabel.setText(email);
if (StringUtil.isEmpty(web)) pluginWebsiteLabel.setText("---");
else pluginWebsiteLabel.setText(web);
pack();
}
/** Collapse event */
private boolean collapseWith(SequenceEvent e) {
// same source type
if (e.getSourceType() == sourceType) {
switch (sourceType) {
case SEQUENCE_META:
if (StringUtil.equals((String) e.getSource(), (String) source)) return true;
case SEQUENCE_COLORMAP:
case SEQUENCE_COMPONENTBOUNDS:
// join events in one global event
if (e.getParam() != param) param = -1;
return true;
case SEQUENCE_DATA:
// optimize different type event to a single CHANGED event (for DATA only)
if (e.getType() != type) type = SequenceEventType.CHANGED;
if (e.getSource() != source) source = null;
return true;
case SEQUENCE_PAINTER:
case SEQUENCE_OVERLAY:
case SEQUENCE_ROI:
// same type ?
if (e.getType() == type) {
// join events in one global event
if (e.getSource() != source) source = null;
return true;
}
break;
case SEQUENCE_TYPE:
return true;
}
}
return false;
}
/**
* Save the specified sequence in the specified file.<br>
* When the sequence contains severals image the multipleFile flag is used to indicate if images
* are saved as separate files (file then specify a directory) or not.<br>
* <code>zMin</code> - <code>zMax</code> and <code>tMin</code> - <code>tMax</code> define the Z
* and T images range to save.<br>
*
* @param formatWriter writer used to save sequence (define the image format).<br>
* If set to <code>null</code> then writer is determined from the file extension.<br>
* If destination file does not have a valid extension (for folder for instance) then you have
* to specify a valid Writer to write the image file (see {@link #getWriter(ImageFileFormat)})
* @param sequence sequence to save
* @param file file where we want to save sequence.<br>
* Depending the <code>formatWriter</code> the file extension may be modified.<br>
* That is preferred as saving an image with a wrong extension may result in error on future
* read (wrong reader detection).
* @param zMin start Z position to save
* @param zMax end Z position to save
* @param tMin start T position to save
* @param tMax end T position to save
* @param fps frame rate for AVI sequence save
* @param multipleFile flag to indicate if images are saved in separate file
* @param showProgress show progress bar
* @param addToRecent add the saved sequence to recent opened sequence list
*/
public static void save(
IFormatWriter formatWriter,
Sequence sequence,
File file,
int zMin,
int zMax,
int tMin,
int tMax,
int fps,
boolean multipleFile,
boolean showProgress,
boolean addToRecent) {
final String filePath = FileUtil.cleanPath(FileUtil.getGenericPath(file.getAbsolutePath()));
final int sizeT = (tMax - tMin) + 1;
final int sizeZ = (zMax - zMin) + 1;
final int numImages = sizeT * sizeZ;
final FileFrame saveFrame;
final ApplicationMenu mainMenu;
if (addToRecent) mainMenu = Icy.getMainInterface().getApplicationMenu();
else mainMenu = null;
if (showProgress && !Icy.getMainInterface().isHeadLess())
saveFrame = new FileFrame("Saving", filePath);
else saveFrame = null;
try {
if (saveFrame != null) {
saveFrame.setLength(numImages);
saveFrame.setPosition(0);
}
// need multiple files ?
if ((numImages > 1) && multipleFile) {
final IFormatWriter writer;
// so we won't create it for each image
if (formatWriter == null) writer = getWriter(file, ImageFileFormat.TIFF);
else writer = formatWriter;
if (writer == null)
throw new UnknownFormatException(
"Can't find a valid image writer for the specified file: " + file);
// save as severals images
final DecimalFormat decimalFormat = new DecimalFormat("0000");
final String fileName = FileUtil.getFileName(filePath, false);
String fileExt = FileUtil.getFileExtension(filePath, true);
String fileBaseDirectory = FileUtil.getDirectory(filePath);
if (fileBaseDirectory.endsWith("/"))
fileBaseDirectory = fileBaseDirectory.substring(0, fileBaseDirectory.length() - 1);
// no extension (directory) ?
if (StringUtil.isEmpty(fileExt)) {
// filename is part of directory
fileBaseDirectory += FileUtil.separator + fileName;
// use the default file extension for the specified writer
fileExt = "." + getImageFileFormat(writer, ImageFileFormat.TIFF).getExtensions()[0];
}
final String filePathWithoutExt = fileBaseDirectory + FileUtil.separator + fileName;
// create output directory
FileUtil.createDir(fileBaseDirectory);
// default name used --> use filename
if (sequence.isDefaultName()) sequence.setName(fileName);
sequence.setFilename(fileBaseDirectory);
for (int t = tMin; t <= tMax; t++) {
for (int z = zMin; z <= zMax; z++) {
String filename = filePathWithoutExt;
if ((tMax - tMin) > 0) filename += "_t" + decimalFormat.format(t);
if ((zMax - zMin) > 0) filename += "_z" + decimalFormat.format(z);
filename += fileExt;
// save as single image file
save(writer, sequence, filename, z, z, t, t, fps, saveFrame);
}
}
// add as one item to recent file list
if (mainMenu != null) mainMenu.addRecentFile(fileBaseDirectory);
} else {
final String fileExt = FileUtil.getFileExtension(filePath, false);
final ImageFileFormat iff;
if (formatWriter != null) iff = getImageFileFormat(formatWriter, ImageFileFormat.TIFF);
else iff = ImageFileFormat.getWriteFormat(fileExt, ImageFileFormat.TIFF);
// force to set correct file extension
final String fixedFilePath;
if (iff.matches(fileExt)) fixedFilePath = filePath;
else fixedFilePath = filePath + "." + iff.getExtensions()[0];
// default name used --> use filename
if (sequence.isDefaultName()) sequence.setName(FileUtil.getFileName(fixedFilePath, false));
sequence.setFilename(fixedFilePath);
// save into a single file
save(formatWriter, sequence, fixedFilePath, zMin, zMax, tMin, tMax, fps, saveFrame);
// add as one item to recent file list
if (mainMenu != null) mainMenu.addRecentFile(fixedFilePath);
}
// Sequence persistence enabled --> save XML
if (GeneralPreferences.getSequencePersistence()) sequence.saveXMLData();
} catch (Exception e) {
IcyExceptionHandler.showErrorMessage(e, true);
if (showProgress && !Icy.getMainInterface().isHeadLess())
new FailedAnnounceFrame("Failed to save image(s) (see output console for details)", 15);
return;
} finally {
if (saveFrame != null) saveFrame.close();
}
}