public ElementVerification verifyUsage(
Profile p, Profile baseP, String id, String type, String eltName, String eltValue) {
// Type can be SegmentRef, Group, Field, Component, Code
// EltName is Usage
String hl7Version = p.getMetaData().getHl7Version();
Usage referenceUsage = Usage.R;
Usage currentUsage = Usage.R;
switch (type) {
case "segmentRef":
SegmentRefOrGroup srog = p.getMessages().findOneSegmentRefOrGroup(id);
currentUsage = srog.getUsage();
SegmentRefOrGroup basesrog = baseP.getMessages().findOneSegmentRefOrGroup(id);
referenceUsage = basesrog.getUsage();
break;
case "group":
SegmentRefOrGroup srog_ = p.getMessages().findOneSegmentRefOrGroup(id);
currentUsage = srog_.getUsage();
SegmentRefOrGroup basesrog_ = baseP.getMessages().findOneSegmentRefOrGroup(id);
referenceUsage = basesrog_.getUsage();
break;
case "field":
// Field f = p.getSegmentLibrary().findOneField(id);
// currentUsage = f.getUsage();
// Field basef = baseP.getSegmentLibrary().findOneField(id);
// referenceUsage = basef.getUsage();
break;
case "component":
// Component c = p.getDatatypeLibrary().findOneComponent(id);
// currentUsage = c.getUsage();
// Component basec = baseP.getDatatypeLibrary().findOneComponent(id);
// referenceUsage = basec.getUsage();
break;
case "code":
// Code cd = p.getTableLibrary().findOneCodeById(id);
// currentUsage = Usage.fromValue(cd.getCodeUsage());
// Code basecd = baseP.getTableLibrary().findOneCodeById(id);
// referenceUsage = Usage.fromValue(basecd.getCodeUsage());
break;
}
String result = this.validateChangeUsage(hl7Version, referenceUsage, currentUsage);
ElementVerification ev = new ElementVerification(id, type);
ElementVerificationResult evRst = new ElementVerificationResult(eltName, eltValue, result);
ev.addElementVerifications(evRst);
return ev;
}
public ElementVerification verifyMessages(Profile p, Profile baseP, String id, String type) {
ElementVerification evm = new ElementVerification(id, type);
for (Message m : p.getMessages().getChildren()) {
evm.addChildrenVerification(verifyMessages(p, baseP, m.getId(), m.getType()));
}
return evm;
}
public ElementVerification verifyDatatypes(Profile p, Profile baseP, String id, String type) {
DatatypeLibrary dtLib = p.getDatatypeLibrary();
ElementVerification evdtLib = new ElementVerification(id, type);
// for (Datatype dt : dtLib.getChildren()){
// evdtLib.addChildrenVerification(verifyDatatype(p, baseP, dt.getId(), dt.getType()));
// }
return evdtLib;
}
public ElementVerification verifyMessage(Profile p, Profile baseP, String id, String type) {
ElementVerification evm = new ElementVerification(id, type);
Message m = p.getMessages().findOne(id);
for (SegmentRefOrGroup srog : m.getChildren()) {
evm.addChildrenVerification(verifySegmentOrGroup(p, baseP, srog.getId(), srog.getType()));
}
return evm;
}
public ElementVerification verifySegments(Profile p, Profile baseP, String id, String type) {
ElementVerification evsLib = new ElementVerification(id, type);
for (SegmentLink sl : p.getSegmentLibrary().getChildren()) {
Segment s = segmentRepository.findOne(sl.getId());
ElementVerification evs = verifySegment(p, baseP, s.getId(), s.getType());
evs.addChildrenVerification(evsLib);
}
return evsLib;
}
public ElementVerification verifySegmentOrGroup(
Profile p, Profile baseP, String id, String type) {
SegmentRefOrGroup srog = p.getMessages().findOneSegmentRefOrGroup(id);
ElementVerification evSrog = verifySegmentRef(srog); // verify usage, min and max for segref and
// group
if (srog instanceof Group) {
evSrog.addChildrenVerification(verifyGroup(srog));
}
return evSrog;
}
@Test
public void testApplyProfileMetaDataChanges() throws IOException {
String p = IOUtils.toString(this.getClass().getResourceAsStream("/vxuTest/Profile.xml"));
String v = IOUtils.toString(this.getClass().getResourceAsStream("/vxuTest/ValueSets_all.xml"));
String c = IOUtils.toString(this.getClass().getResourceAsStream("/vxuTest/Constraints.xml"));
Profile p1 = new ProfileSerializationImpl().deserializeXMLToProfile(p, v, c);
String jsonChanges =
"\r\n\r\n {\r\n \"profile\": {\r\n \"edit\": [\r\n {\r\n \"id\": \"552014603004d0a9f09caf16\",\r\n \"identifier\": \"ddddddddddddd\",\r\n \"subTitle\": \"ddddddddd\",\r\n \"orgName\": \"NISTddddd\",\r\n \"name\": \"VXU_V04ddddd\"\r\n }\r\n ]\r\n }\r\n}\r\n ";
try {
p1 = profileService.apply(p1);
assertEquals("ddddddddddddd", p1.getMetaData().getProfileID());
assertEquals("ddddddddd", p1.getMetaData().getSubTitle());
assertEquals("NISTddddd", p1.getMetaData().getOrgName());
assertEquals("VXU_V04ddddd", p1.getMetaData().getName());
// assertEquals(jsonChanges, p1.getChanges());
} catch (ProfileSaveException e) {
if (e.getErrors() != null && !e.getErrors().isEmpty()) {
for (ProfilePropertySaveError error : e.getErrors()) {
System.out.println(error);
}
}
}
}
public ElementVerification verifyValueSet(Profile p, Profile baseP, String id, String type) {
// Type is ValueSet (or Table)
String result = "";
TableLink t = p.getTableLibrary().findOneTableById(id);
ElementVerification evt = new ElementVerification(id, type);
// for (Code c : t.getCodes()){
// result = this.validateChangeUsage(p.getMetaData().getHl7Version(),
// Usage.fromValue(baseP.getTableLibrary().findOneCodeById(id).getCodeUsage()),
// Usage.fromValue(p.getTableLibrary().findOneCodeById(id).getCodeUsage()));
// ElementVerification evc = new ElementVerification(c.getId(), c.getType());
// ElementVerificationResult evcRst = new ElementVerificationResult("usage", c.getCodeUsage(),
// result);
// evc.addElementVerifications(evcRst);
// evt.addChildrenVerification(evc);
// }
return evt;
}
@Test
public void testApplyMessageChanges() throws IOException {
String p = IOUtils.toString(this.getClass().getResourceAsStream("/vxuTest/Profile.xml"));
String v = IOUtils.toString(this.getClass().getResourceAsStream("/vxuTest/ValueSets_all.xml"));
String c = IOUtils.toString(this.getClass().getResourceAsStream("/vxuTest/Constraints.xml"));
Profile p1 = new ProfileSerializationImpl().deserializeXMLToProfile(p, v, c);
Message message = p1.getMessages().getChildren().toArray(new Message[] {})[0];
SegmentRef segmentRef = (SegmentRef) message.getChildren().get(0);
Group group = (Group) message.getChildren().get(5);
Segment segment = p1.getSegmentLibrary().findOneSegmentById(segmentRef.getRef());
Field field = segment.getFields().get(0);
Datatype datatype = p1.getDatatypeLibrary().getChildren().toArray(new Datatype[] {})[0];
String jsonChanges =
"{\r\n \"segmentRef\": {\r\n \"edit\": [\r\n {\r\n \"id\": \""
+ segmentRef.getId()
+ "\",\r\n \"usage\": \"X\",\r\n \"min\": \"100\",\r\n \"max\": \"100\"\r\n }\r\n ]\r\n },\r\n \"message\": {\r\n \"edit\": [\r\n {\r\n \"id\": \""
+ message.getId()
+ "\",\r\n \"identifier\": \"identifier\",\r\n \"version\": \"version\",\r\n \"oid\": \"oid\",\r\n \"date\": \"today\",\r\n \"comment\": \"comment\"\r\n }\r\n ]\r\n }\r\n, \"group\": {\r\n \"edit\": [\r\n {\r\n \"id\": \""
+ message.getChildren().get(5).getId()
+ "\",\r\n \"usage\": \"W\"\r\n }\r\n ]\r\n }, \"segment\": {\r\n \"edit\": [\r\n {\r\n \"id\": \""
+ segment.getId()
+ "\",\r\n \"label\": \"label\",\r\n \"description\": \"desc\",\r\n \"comment\": \"comment\",\r\n \"text2\": \"posttest\",\r\n \"text1\": \"pretest\"\r\n }\r\n ]\r\n },\r\n \"field\": {\r\n \"edit\": [\r\n {\r\n \"id\": \""
+ field.getId()
+ "\",\r\n \"usage\": \"X\",\r\n \"min\": \"10\",\r\n \"max\": \"10\",\r\n \"minLength\": \"10\",\r\n \"maxLength\": \"10\",\r\n \"confLength\": \"10\",\r\n \"datatype\": {\r\n \"id\": \""
+ datatype.getId()
+ "\"\r\n }\r\n }\r\n ]\r\n }, "
+ "\"datatype\": {\n \"add\": [\n {\n \"type\": \"datatype\",\n \"id\": -3821077,\n \"label\": \"HD_IZ_3821077\",\n \"components\": [\n {\n \"type\": \"component\",\n \"name\": \"Namespace ID\",\n \"usage\": \"C\",\n \"minLength\": 1,\n \"maxLength\": \"20\",\n \"confLength\": \"\",\n \"table\": {\n \"id\": \"552014603004d0a9f09ca2b3\"\n },\n \"bindingStrength\": \"\",\n \"bindingLocation\": \"\",\n \"datatype\": {\n \"id\": \"552014603004d0a9f09cab27\"\n },\n \"position\": 1,\n \"comment\": null,\n \"id\": -4399911,\n \"path\": \"MSH.3.1\"\n },\n {\n \"type\": \"component\",\n \"name\": \"Universal ID\",\n \"usage\": \"C\",\n \"minLength\": 1,\n \"maxLength\": \"199\",\n \"confLength\": \"\",\n \"table\": null,\n \"bindingStrength\": \"\",\n \"bindingLocation\": \"\",\n \"datatype\": {\n \"id\": \"552014603004d0a9f09cab29\"\n },\n \"position\": 2,\n \"comment\": null,\n \"id\": -740343,\n \"path\": \"MSH.3.2\"\n },\n {\n \"type\": \"component\",\n \"name\": \"Universal ID Type\",\n \"usage\": \"C\",\n \"minLength\": 1,\n \"maxLength\": \"6\",\n \"confLength\": \"\",\n \"table\": {\n \"id\": \"552014603004d0a9f09ca25e\"\n },\n \"bindingStrength\": \"\",\n \"bindingLocation\": \"\",\n \"datatype\": {\n \"id\": \"552014603004d0a9f09cab2e\"\n },\n \"position\": 3,\n \"comment\": null,\n \"id\": -7086103,\n \"path\": \"MSH.3.3\"\n }\n ],\n \"name\": \"HD\",\n \"description\": \"Hierarchic Designator\",\n \"predicates\": [\n {\n \"id\": -1307454,\n \"constraintId\": \"[HD_IZ]1[1]\",\n \"constraintTarget\": \"1[1]\",\n \"reference\": null,\n \"description\": \"If HD.2 (Universal ID) is not valued.\",\n \"assertion\": \"<Condition>\\n <NOT>\\n <Presence Path=\\\"2[1]\\\"/>\\n </NOT>\\n </Condition>\",\n \"trueUsage\": \"R\",\n \"falseUsage\": \"O\"\n },\n {\n \"id\": -3885632,\n \"constraintId\": \"[HD_IZ]2[1]\",\n \"constraintTarget\": \"2[1]\",\n \"reference\": null,\n \"description\": \"If HD.1 (Namespace ID) is not valued.\",\n \"assertion\": \"<Condition>\\n <NOT>\\n <Presence Path=\\\"1[1]\\\"/>\\n </NOT>\\n </Condition>\",\n \"trueUsage\": \"R\",\n \"falseUsage\": \"O\"\n },\n {\n \"id\": -5889559,\n \"constraintId\": \"[HD_IZ]3[1]\",\n \"constraintTarget\": \"3[1]\",\n \"reference\": null,\n \"description\": \"If HD.2 (Universal ID) is valued.\",\n \"assertion\": \"<Condition>\\n <Presence Path=\\\"2[1]\\\"/>\\n </Condition>\",\n \"trueUsage\": \"R\",\n \"falseUsage\": \"X\"\n }\n ],\n \"conformanceStatements\": [\n {\n \"id\": -7578659,\n \"constraintId\": \"IZ-5\",\n \"constraintTarget\": \"2[1]\",\n \"reference\": null,\n \"description\": \"The value of HD.2 (Universal ID) SHALL be formatted with ISO-compliant OID.\",\n \"assertion\": \"<Assertion>\\n <Format Path=\\\"2[1]\\\" Regex=\\\"[0-2](\\\\.(0|[1-9][0-9]*))*\\\"/>\\n </Assertion>\"\n },\n {\n \"id\": -3467488,\n \"constraintId\": \"IZ-6\",\n \"constraintTarget\": \"3[1]\",\n \"reference\": null,\n \"description\": \"The value of HD.3 (Universal ID Type) SHALL be 'ISO'.\",\n \"assertion\": \"<Assertion>\\n <PlainText IgnoreCase=\\\"false\\\" Path=\\\"3[1]\\\" Text=\\\"ISO\\\"/>\\n </Assertion>\"\n }\n ],\n \"comment\": null,\n \"usageNote\": null\n }\n ]\n }"
+ " }\r\n ";
try {
p1 = profileService.apply(p1);
assertEquals("identifier", message.getIdentifier());
assertEquals("comment", message.getComment());
assertEquals("X", segmentRef.getUsage().toString());
assertEquals("100", segmentRef.getMin() + "");
assertEquals("W", group.getUsage().toString());
assertEquals("label", segment.getLabel());
assertEquals("comment", segment.getComment());
assertEquals("pretest", segment.getText1());
assertEquals("posttest", segment.getText2());
assertEquals("desc", segment.getDescription());
assertEquals(datatype.getId(), field.getDatatype());
assertEquals("X", field.getUsage().value());
assertEquals(new Integer(10), field.getMin());
assertEquals("10", field.getMax());
assertEquals(new Integer(10), field.getMinLength());
assertEquals("10", field.getMaxLength());
assertEquals("10", field.getConfLength());
} catch (ProfileSaveException e) {
if (e.getErrors() != null && !e.getErrors().isEmpty()) {
for (ProfilePropertySaveError error : e.getErrors()) {
System.out.println(error);
}
}
}
//
}