/**
* @param hybridizationDatas
* @return
*/
protected List<float[]> retrieveAllHybridizationValues(
List<HybridizationData> hybridizationDatas) {
List<float[]> allHybridizationsValues = new ArrayList<float[]>();
for (HybridizationData hybridizationData : hybridizationDatas) {
float[] values = ((FloatColumn) hybridizationData.getDataColumns().get(0)).getValues();
allHybridizationsValues.add(values);
}
return allHybridizationsValues;
}
/**
* @param dataSet
* @throws InvalidInputException
*/
protected void fillSampleToHybridizationDataMap(DataSet dataSet) throws InvalidInputException {
getSampleToHybridizationDataMap().clear();
for (HybridizationData hybridizationData : dataSet.getDatas()) {
Sample sample = getAssociatedSample(hybridizationData.getHybridization());
if (getSampleToHybridizationDataMap().get(sample) == null) {
getSampleToHybridizationDataMap().put(sample, new ArrayList<HybridizationData>());
}
getSampleToHybridizationDataMap().get(sample).add(hybridizationData);
}
}
@Test
public void testGetDataSet_Hybridizations1() throws Exception {
logForSilverCompatibility(TEST_NAME, "testGetDataSet_Hybridizations1");
DataSetRequest dataRequest = new DataSetRequest();
String hid =
"URN:LSID:caarray.nci.nih.gov:gov.nih.nci.caarray.external.v1_0.sample.Hybridization:1";
dataRequest.setHybridizations(Collections.singleton(new CaArrayEntityReference(hid)));
String qtid =
"URN:LSID:caarray.nci.nih.gov:gov.nih.nci.caarray.external.v1_0.data.QuantitationType:24";
dataRequest.setQuantitationTypes(Collections.singleton(new CaArrayEntityReference(qtid)));
DataSet ds = service.getDataSet(dataRequest);
List<HybridizationData> l = ds.getDatas();
assertEquals(1, l.size());
HybridizationData hd = l.get(0);
assertEquals(1, hd.getDataColumns().size());
assertEquals(qtid, hd.getDataColumns().get(0).getQuantitationType().getId());
String resultId = hd.getHybridization().getId();
assertEquals(hid, resultId);
}