private void setAffectedLines(final BugInstance warning, final Bug bug) {
Iterator<BugAnnotation> annotationIterator = warning.annotationIterator();
while (annotationIterator.hasNext()) {
BugAnnotation bugAnnotation = annotationIterator.next();
if (bugAnnotation instanceof SourceLineAnnotation) {
SourceLineAnnotation annotation = (SourceLineAnnotation) bugAnnotation;
bug.addLineRange(new LineRange(annotation.getStartLine(), annotation.getEndLine()));
}
}
}
private static void addSourceLines(Collection<TaintLocation> locations, BugInstance bugInstance) {
List<SourceLineAnnotation> annotations = new LinkedList<SourceLineAnnotation>();
for (TaintLocation location : locations) {
SourceLineAnnotation taintSource =
SourceLineAnnotation.fromVisitedInstruction(
location.getMethodDescriptor(), location.getPosition());
annotations.add(taintSource);
}
Collections.sort(annotations);
SourceLineAnnotation annotation = null;
for (Iterator<SourceLineAnnotation> it = annotations.iterator(); it.hasNext(); ) {
SourceLineAnnotation prev = annotation;
annotation = it.next();
if (prev != null
&& prev.getClassName().equals(annotation.getClassName())
&& prev.getStartLine() == annotation.getStartLine()) {
// keep only one annotation per line
it.remove();
}
}
for (SourceLineAnnotation sourceLine : annotations) {
bugInstance.addSourceLine(sourceLine);
}
}
/**
* Returns the parsed FindBugs analysis file. This scanner accepts files in the native FindBugs
* format.
*
* @param file the FindBugs analysis file
* @param sources a collection of folders to scan for source files
* @param moduleName name of maven module
* @param hashToMessageMapping mapping of hash codes to messages
* @param categories mapping from bug types to their categories
* @return the parsed result (stored in the module instance)
* @throws IOException if the file could not be parsed
* @throws DocumentException in case of a parser exception
*/
private Collection<FileAnnotation> parse(
final InputStream file,
final Collection<String> sources,
final String moduleName,
final Map<String, String> hashToMessageMapping,
final Map<String, String> categories)
throws IOException, DocumentException {
SortedBugCollection collection = readXml(file);
Project project = collection.getProject();
for (String sourceFolder : sources) {
project.addSourceDir(sourceFolder);
}
SourceFinder sourceFinder = new SourceFinder(project);
String actualName = extractModuleName(moduleName, project);
TreeStringBuilder stringPool = new TreeStringBuilder();
List<FileAnnotation> annotations = new ArrayList<FileAnnotation>();
Collection<BugInstance> bugs = collection.getCollection();
for (BugInstance warning : bugs) {
SourceLineAnnotation sourceLine = warning.getPrimarySourceLineAnnotation();
String message = warning.getMessage();
String type = warning.getType();
if (message.contains("TEST: Unknown")) {
message = FindBugsMessages.getInstance().getShortMessage(type, LocaleProvider.getLocale());
}
String category = categories.get(type);
if (category
== null) { // alternately, only if warning.getBugPattern().getType().equals("UNKNOWN")
category = warning.getBugPattern().getCategory();
}
Bug bug =
new Bug(
getPriority(warning),
StringUtils.defaultIfEmpty(
hashToMessageMapping.get(warning.getInstanceHash()), message),
category,
type,
sourceLine.getStartLine(),
sourceLine.getEndLine());
bug.setInstanceHash(warning.getInstanceHash());
bug.setRank(warning.getBugRank());
boolean ignore = setCloudInformation(collection, warning, bug);
if (!ignore) {
bug.setNotAProblem(false);
bug.setFileName(findSourceFile(project, sourceFinder, sourceLine));
bug.setPackageName(warning.getPrimaryClass().getPackageName());
bug.setModuleName(actualName);
setAffectedLines(warning, bug);
annotations.add(bug);
bug.intern(stringPool);
}
}
return applyFilters(annotations);
}
public static List<ErrorDescription> runFindBugs(
CompilationInfo info,
Preferences customSettings,
String singleBug,
FileObject sourceRoot,
Iterable<? extends String> classNames,
FindBugsProgress progress,
SigFilesValidator validator) {
List<ErrorDescription> result = new ArrayList<ErrorDescription>();
try {
Class.forName(
"org.netbeans.modules.findbugs.NbClassFactory",
true,
RunFindBugs.class.getClassLoader()); // NOI18N
Project p = new Project();
URL[] binaryRoots =
CacheBinaryForSourceQuery.findCacheBinaryRoots(sourceRoot.toURL()).getRoots();
if (classNames == null) {
for (URL binary : binaryRoots) {
try {
p.addFile(new File(binary.toURI()).getAbsolutePath());
} catch (URISyntaxException ex) {
Exceptions.printStackTrace(ex);
}
}
} else {
ClassPath binary = ClassPathSupport.createClassPath(binaryRoots);
List<FileObject> sigFiles = new ArrayList<FileObject>();
for (String className : classNames) {
FileObject classFO = binary.findResource(className.replace('.', '/') + ".sig"); // NOI18N
if (classFO != null) {
sigFiles.add(classFO);
} else {
LOG.log(
Level.WARNING,
"Cannot find sig file for: "
+ className); // TODO: should probably become FINE eventually
}
}
assert validator != null;
if (!validator.validate(sigFiles)) return null;
for (FileObject classFO : sigFiles) {
p.addFile(new File(classFO.toURI()).getAbsolutePath());
}
addCompileRootAsSource(p, sourceRoot);
}
ClassPath compile = ClassPath.getClassPath(sourceRoot, ClassPath.COMPILE);
for (FileObject compileRoot : compile.getRoots()) {
addCompileRoot(p, compileRoot);
}
BugCollectionBugReporter r =
new BugCollectionBugReporter(p) {
@Override
protected void emitLine(String line) {
LOG.log(Level.FINE, line);
}
};
r.setPriorityThreshold(Integer.MAX_VALUE);
r.setRankThreshold(Integer.MAX_VALUE);
FindBugs2 engine = new FindBugs2();
engine.setProject(p);
engine.setNoClassOk(true);
engine.setBugReporter(r);
if (progress != null) {
engine.setProgressCallback(progress);
}
boolean inEditor = validator != null;
Preferences settings =
customSettings != null
? customSettings
: NbPreferences.forModule(RunFindBugs.class).node("global-settings");
UserPreferences preferences;
if (singleBug != null) {
singleBug = singleBug.substring(PREFIX_FINDBUGS.length());
preferences = forSingleBug(singleBug);
} else {
preferences = readPreferences(settings, customSettings != null);
}
if (preferences == null) {
// nothing enabled, stop
return result;
}
engine.setUserPreferences(preferences);
engine.setDetectorFactoryCollection(DetectorFactoryCollection.instance());
LOG.log(Level.FINE, "Running FindBugs");
engine.execute();
Map<FileObject, List<BugInstance>> file2Bugs = new HashMap<FileObject, List<BugInstance>>();
for (BugInstance b : r.getBugCollection().getCollection()) {
if (singleBug != null && !singleBug.equals(b.getBugPattern().getType())) continue;
if (singleBug == null
&& !settings.getBoolean(
b.getBugPattern().getType(),
customSettings == null && isEnabledByDefault(b.getBugPattern()))) {
continue;
}
SourceLineAnnotation sourceLine = b.getPrimarySourceLineAnnotation();
FileObject sourceFile = null;
if (sourceLine != null) {
sourceFile = sourceRoot.getFileObject(sourceLine.getSourcePath());
if (sourceFile != null) {
List<BugInstance> bugs = file2Bugs.get(sourceFile);
if (bugs == null) {
file2Bugs.put(sourceFile, bugs = new ArrayList<BugInstance>());
}
bugs.add(b);
} else {
LOG.log(
Level.WARNING,
"{0}, location: {1}:{2}",
new Object[] {b, sourceLine.getSourcePath(), sourceLine.getStartLine()});
}
}
}
for (Entry<FileObject, List<BugInstance>> e : file2Bugs.entrySet()) {
int[] lineOffsets = null;
FileObject sourceFile = e.getKey();
DataObject d = DataObject.find(sourceFile);
EditorCookie ec = d.getLookup().lookup(EditorCookie.class);
Document doc = ec.getDocument();
JavaSource js = null;
for (BugInstance b : e.getValue()) {
SourceLineAnnotation sourceLine = b.getPrimarySourceLineAnnotation();
if (sourceLine.getStartLine() >= 0) {
LazyFixList fixes =
prepareFixes(b, inEditor, sourceFile, sourceLine.getStartLine(), null);
if (doc != null) {
result.add(
ErrorDescriptionFactory.createErrorDescription(
PREFIX_FINDBUGS + b.getType(),
Severity.VERIFIER,
b.getMessageWithoutPrefix(),
b.getBugPattern().getDetailHTML(),
fixes,
doc,
sourceLine.getStartLine()));
} else {
if (lineOffsets == null) {
lineOffsets = computeLineMap(sourceFile, FileEncodingQuery.getEncoding(sourceFile));
}
int edLine = 2 * (Math.min(sourceLine.getStartLine(), lineOffsets.length / 2) - 1);
result.add(
ErrorDescriptionFactory.createErrorDescription(
PREFIX_FINDBUGS + b.getType(),
Severity.VERIFIER,
b.getMessageWithoutPrefix(),
b.getBugPattern().getDetailHTML(),
fixes,
sourceFile,
lineOffsets[edLine],
lineOffsets[edLine + 1]));
}
} else {
if (js == null) {
js = JavaSource.forFileObject(sourceFile);
}
addByElementAnnotation(b, info, sourceFile, js, result, inEditor);
}
}
}
} catch (ClassNotFoundException ex) {
Exceptions.printStackTrace(ex);
} catch (IOException ex) {
Exceptions.printStackTrace(ex);
} catch (InterruptedException ex) {
LOG.log(Level.FINE, null, ex);
}
return result;
}