private void addNodes() {
for (CyNode node : nodeList) {
PRNode prNode = new PRNode(node);
graph.addVertex(prNode);
idToNode.put(node.getSUID(), prNode);
}
}
private void addEdges() {
for (CyEdge edge : edgeList) {
PRNode sourceNode = idToNode.get(edge.getSource().getSUID());
PRNode targetNode = idToNode.get(edge.getTarget().getSUID());
PREdge prEdge = new PREdge(edge);
insertEdgeScore(prEdge, edgeTable, edgeAttributes);
graph.addEdge(prEdge, new Pair<>(sourceNode, targetNode), EdgeType.DIRECTED);
}
}
private void insertScores(List<NodeCluster> clusters, PageRank<PRNode, PREdge> pageRank) {
for (PRNode node : graph.getVertices()) {
node.setPRScore(pageRank.getVertexScore(node));
for (NodeCluster cluster : clusters) {
if (cluster.getNodeScores().containsKey(node.getCyNode().getSUID())) {
cluster.addScoreToAvg(pageRank.getVertexScore(node));
}
}
}
}