@Test
public void testGetPositionString() throws Exception {
childSpc.setParentFromPositionString("A1", childSpc.getParentContainer());
Assert.assertTrue(childSpc.getPositionString(false, false).equals("A1"));
String parentLabel = childSpc.getParentContainer().getLabel();
Assert.assertTrue(childSpc.getPositionString(true, false).equals(parentLabel + "A1"));
// getPositionString with no parameters is equivalent to
// getPositionString(true, true)
Assert.assertTrue(
childSpc
.getPositionString()
.equals(parentLabel + "A1 (" + topContainer.getContainerType().getNameShort() + ")"));
childSpc.setParent(null, null);
Assert.assertNull(childSpc.getPositionString(false, false));
}
@Test
public void testGetSpecimensInSiteWithPositionLabel() throws Exception {
ContainerWrapper container = childSpc.getParentContainer();
ContainerTypeWrapper containerType = container.getContainerType();
SpecimenTypeWrapper sampleType = containerType.getSpecimenTypeCollection(false).get(0);
Assert.assertNotNull(sampleType);
childSpc.setInventoryId(Utils.getRandomString(5));
childSpc.persist();
SpecimenHelper.newSpecimen(
childSpc,
childSpc.getSpecimenType(),
ActivityStatus.ACTIVE,
childSpc.getProcessingEvent(),
childSpc.getParentContainer(),
0,
1);
SpecimenHelper.newSpecimen(
childSpc,
childSpc.getSpecimenType(),
ActivityStatus.ACTIVE,
childSpc.getProcessingEvent(),
childSpc.getParentContainer(),
1,
0);
childSpc =
SpecimenHelper.newSpecimen(
childSpc,
childSpc.getSpecimenType(),
ActivityStatus.ACTIVE,
childSpc.getProcessingEvent(),
childSpc.getParentContainer(),
0,
2);
childSpc.setInventoryId(Utils.getRandomString(5));
childSpc.persist();
List<SpecimenWrapper> specimens =
SpecimenWrapper.getSpecimensInSiteWithPositionLabel(
appService, site, childSpc.getPositionString(true, false));
Assert.assertEquals(1, specimens.size());
Assert.assertEquals(specimens.get(0), childSpc);
}
@Test
public void testGetSpecimensNonActive() throws Exception {
ContainerWrapper container = childSpc.getParentContainer();
ContainerTypeWrapper containerType = container.getContainerType();
SpecimenTypeWrapper sampleType = containerType.getSpecimenTypeCollection(false).get(0);
Assert.assertNotNull(sampleType);
ActivityStatus activityStatusNonActive = ActivityStatus.CLOSED;
List<SpecimenWrapper> activeSpecimens = new ArrayList<SpecimenWrapper>();
List<SpecimenWrapper> nonActiveSpecimens = new ArrayList<SpecimenWrapper>();
activeSpecimens.add(childSpc);
for (int i = 1, n = container.getColCapacity(); i < n; ++i) {
activeSpecimens.add(
SpecimenHelper.newSpecimen(
parentSpc,
childSpc.getSpecimenType(),
ActivityStatus.ACTIVE,
childSpc.getProcessingEvent(),
childSpc.getParentContainer(),
0,
i));
SpecimenWrapper a =
SpecimenHelper.newSpecimen(
parentSpc,
childSpc.getSpecimenType(),
ActivityStatus.ACTIVE,
childSpc.getProcessingEvent(),
childSpc.getParentContainer(),
1,
i);
a.setActivityStatus(activityStatusNonActive);
a.persist();
nonActiveSpecimens.add(a);
}
List<SpecimenWrapper> specimens =
SpecimenWrapper.getSpecimensNonActiveInCenter(appService, site);
Assert.assertEquals(nonActiveSpecimens.size(), specimens.size());
Assert.assertTrue(specimens.containsAll(nonActiveSpecimens));
Assert.assertFalse(specimens.containsAll(activeSpecimens));
}
@Test
public void testDebugRandomMethods() throws Exception {
System.out.println(parentSpc.getProcessingEvent());
System.out.println(childSpc.getProcessingEvent());
ContainerWrapper container = childSpc.getParentContainer();
ContainerTypeWrapper containerType = container.getContainerType();
SpecimenTypeWrapper spcType = containerType.getSpecimenTypeCollection(false).get(0);
Assert.assertNotNull(spcType);
System.out.println(parentSpc.getProcessingEvent());
System.out.println(childSpc.getProcessingEvent());
ProcessingEventWrapper pevent =
ProcessingEventHelper.addProcessingEvent(
childSpc.getCurrentCenter(), Utils.getRandomDate());
// add aliquoted specimen
SpecimenWrapper specimen =
SpecimenHelper.newSpecimen(
parentSpc,
childSpc.getSpecimenType(),
ActivityStatus.ACTIVE,
childSpc.getProcessingEvent(),
childSpc.getParentContainer(),
2,
3);
specimen.setInventoryId(Utils.getRandomString(5));
specimen.persist();
pevent.addToSpecimenCollection(Arrays.asList(parentSpc));
pevent.persist();
SpecimenWrapper s2 =
SpecimenHelper.newSpecimen(
childSpc,
childSpc.getSpecimenType(),
ActivityStatus.ACTIVE,
childSpc.getProcessingEvent(),
childSpc.getParentContainer(),
2,
4);
s2.setParent(null, null);
s2.setParentSpecimen(null);
s2.persist();
try {
// should find at least one specimen with a parent that is inside a
// processing event
Assert.assertTrue(
DebugUtil.getRandomLinkedAliquotedSpecimens(appService, site.getId()).size() > 0);
Assert.assertTrue(DebugUtil.getRandomAssignedSpecimens(appService, site.getId()).size() > 0);
List<SpecimenWrapper> randomNonAssociatedNonDispatchedSpecimens =
DebugUtil.getRandomNonAssignedNonDispatchedSpecimens(appService, site.getId(), 10);
Assert.assertTrue(randomNonAssociatedNonDispatchedSpecimens.size() > 0);
} catch (Exception e) {
Assert.fail(e.getCause().getMessage());
}
try {
s2.delete();
} catch (Exception e) {
e.printStackTrace();
}
}
