/**
* This constructor, which should be only package-accessible, is called by BindingScanLoader as it
* loads BindingScan objects from the database.
*
* @param g
* @param rs
* @param paramStatement
* @param regionStatement
* @throws SQLException
*/
BindingScan(Genome g, ResultSet rs) throws SQLException {
genome = g;
dbid = rs.getInt(1);
type = rs.getString(2);
version = rs.getString(3);
}
/**
* insertIntoDB is called by the BindingScanLoader object, when it wants to put this BindingScan
* into the database. Users who want to insert a BindingScan object should call the
* BindingScanLoader.insertScan() method.
*
* @param c
* @param genomeMap
* @param ps
* @param paramps
* @param regionps
* @throws SQLException
*/
void insertIntoDB(java.sql.Connection c, BindingScanGenomeMap genomeMap, PreparedStatement ps)
throws SQLException {
if (dbid != -1) {
throw new IllegalArgumentException();
}
ps.setString(1, type);
ps.setString(2, version);
ps.executeUpdate();
Statement s = c.createStatement();
ResultSet rs = s.executeQuery("select bindingscan_id.currval from dual");
if (rs.next()) {
dbid = rs.getInt(1);
}
rs.close();
s.close();
genomeMap.insertNewMapping(c, dbid, genome.getDBID());
}
public static int[] getMSPIDs(MSPLocator loc, Connection c) throws SQLException {
Statement s = c.createStatement();
String name = loc.getNameVersion().name;
String version = loc.getNameVersion().version;
ResultSet rs =
s.executeQuery(
"select id from rosettaanalysis where name='"
+ name
+ "' and "
+ "version = '"
+ version
+ "'");
Vector<Integer> values = new Vector<Integer>();
while (rs.next()) {
values.add(rs.getInt(1));
}
s.close();
int[] array = new int[values.size()];
for (int i = 0; i < values.size(); i++) {
array[i] = values.get(i);
}
Arrays.sort(array);
return array;
}