public void createStudyDefinition(Message message) throws RemoteException {
List<Study> objects =
xmUtils.getDomainObjectsFromList(Study.class, xmUtils.getArguments(message));
if (objects.size() != 1) {
throw new RemoteException(
"Illegal Argument(s). Make sure there is exactly one study defination in the message.");
}
WebRequest webRequest =
SessionAndAuditHelper.setupHibernateSessionAndAudit(
interceptor, "C3PR Admin", "Coordinating Center", new Date(), "Coordinating Center");
try {
Study study = objects.get(0);
studyFactory.buildStudy(study);
for (StudySite studySite : study.getStudySites()) {
studySite.setHostedMode(false);
// TODO fix it later
// studySite.setSiteStudyStatus(SiteStudyStatus.PENDING);
}
for (StudyCoordinatingCenter studyCoordinatingCenter : study.getStudyCoordinatingCenters()) {
studyCoordinatingCenter.setHostedMode(false);
}
study.setCoordinatingCenterStudyStatus(CoordinatingCenterStudyStatus.PENDING);
studyDao.save(study);
studyRepository.createStudy(study.getIdentifiers());
} catch (C3PRCodedException e) {
throw new RemoteException("error building the study", e);
} finally {
SessionAndAuditHelper.tearDownHibernateSession(interceptor, webRequest);
}
}
protected Study createDefaultStudyWithDesign() {
Study study = new LocalStudy();
if (companionIndicator != null) {
study.setCompanionIndicator(companionIndicator);
if (!companionIndicator) {
study.setStandaloneIndicator(true);
} else {
study.setStandaloneIndicator(false);
}
}
return study;
}
@Override
protected C save(C command, Errors errors) {
StudyWrapper wrapper = (StudyWrapper) command;
Study study = null;
if (wrapper.getStudy().getId() == null) {
studyDao.save(wrapper.getStudy());
study = studyDao.getByIdentifiers(wrapper.getStudy().getIdentifiers()).get(0);
} else {
study = studyDao.merge(wrapper.getStudy());
}
studyDao.initialize(study);
study.getParentStudyAssociations().size();
wrapper.setStudy(study);
return (C) wrapper;
}
private void handleBookRandomization(Study study) {
for (Epoch epoch : study.getEpochs()) {
if (epoch.getRandomizedIndicator() && !epoch.hasBookRandomizationEntry()) {
BookRandomizationEntry bookRandomizationEntry =
((BookRandomization) epoch.getRandomization()).getBookRandomizationEntry().get(0);
bookRandomizationEntry.setArm(epoch.getArms().get(0));
bookRandomizationEntry.setPosition(0);
}
}
}
public String getTable(
Map<String, List> parameterMap, String[] params, HttpServletRequest request) {
List<StudySubject> studySubjectResults;
Participant participant;
SystemAssignedIdentifier id;
Study study = new LocalStudy(true);
if (!StringUtils.isEmpty(params[0].toString())) {
study.setShortTitleText(params[0].toString());
}
if (!StringUtils.isEmpty(params[1].toString())) {
id = new SystemAssignedIdentifier();
id.setValue(params[1].toString());
study.addIdentifier(id);
}
List<Study> studyList = new ArrayList<Study>();
// this if -else ensures that participant is null if no data relevant to
// participant is
// entered and the studyDao is called.
if (StringUtils.isEmpty(params[2].toString())
&& StringUtils.isEmpty(params[3].toString())
&& StringUtils.isEmpty(params[4].toString())) {
participant = null;
// call the studyDao if participant is null.
studyList = studyDao.searchByExample(study, true, 0);
} else {
participant = new Participant();
id = new SystemAssignedIdentifier();
if (!StringUtils.isEmpty(params[2].toString())) {
id.setValue(params[2].toString());
participant.addIdentifier(id);
}
if (!StringUtils.isEmpty(params[3].toString())) {
participant.setFirstName(params[3].toString());
}
if (!StringUtils.isEmpty(params[4].toString())) {
participant.setLastName(params[4].toString());
}
StudySite studySite = new StudySite();
study.addStudySite(studySite);
StudySubject studySubject = new StudySubject();
studySubject.setStudySite(studySite);
studySubject.setParticipant(participant);
// else call the studySubjectDao
studySubjectResults = studySubjectDao.advancedStudySearch(studySubject);
Iterator iter = studySubjectResults.iterator();
while (iter.hasNext()) {
studyList.add(((StudySubject) iter.next()).getStudySite().getStudy());
}
}
Context context = new HttpServletRequestContext(request, parameterMap);
TableModel model = new TableModelImpl(context);
try {
return build(model, studyList).toString();
} catch (Exception e) {
e.printStackTrace();
}
return "";
}