Exemplo n.º 1
0
  // ===========================SCORING METHODS===================//
  public double scoreDag(Graph graph) {
    Graph dag = new EdgeListGraphSingleConnections(graph);
    buildIndexing(graph);

    double score = 0.0;

    for (Node y : dag.getNodes()) {
      Set<Node> parents = new HashSet<Node>(dag.getParents(y));
      int nextIndex = -1;
      for (int i = 0; i < getVariables().size(); i++) {
        nextIndex = hashIndices.get(variables.get(i));
      }
      int parentIndices[] = new int[parents.size()];
      Iterator<Node> pi = parents.iterator();
      int count = 0;
      while (pi.hasNext()) {
        Node nextParent = pi.next();
        parentIndices[count++] = hashIndices.get(nextParent);
      }

      if (this.isDiscrete()) {
        score += localDiscreteScore(nextIndex, parentIndices);
      } else {
        score += localSemScore(nextIndex, parentIndices);
      }
    }
    return score;
  }
Exemplo n.º 2
0
  private void addRequiredEdges(Graph graph) {
    if (true) return;
    if (knowledgeEmpty()) return;

    for (Iterator<KnowledgeEdge> it = getKnowledge().requiredEdgesIterator(); it.hasNext(); ) {
      KnowledgeEdge next = it.next();

      Node nodeA = graph.getNode(next.getFrom());
      Node nodeB = graph.getNode(next.getTo());

      if (!graph.isAncestorOf(nodeB, nodeA)) {
        graph.removeEdges(nodeA, nodeB);
        graph.addDirectedEdge(nodeA, nodeB);
        TetradLogger.getInstance()
            .log("insertedEdges", "Adding edge by knowledge: " + graph.getEdge(nodeA, nodeB));
      }
    }
    for (Edge edge : graph.getEdges()) {
      final String A = edge.getNode1().getName();
      final String B = edge.getNode2().getName();

      if (knowledge.isForbidden(A, B)) {
        Node nodeA = edge.getNode1();
        Node nodeB = edge.getNode2();

        if (nodeA != null
            && nodeB != null
            && graph.isAdjacentTo(nodeA, nodeB)
            && !graph.isChildOf(nodeA, nodeB)) {
          if (!graph.isAncestorOf(nodeA, nodeB)) {
            graph.removeEdges(nodeA, nodeB);
            graph.addDirectedEdge(nodeB, nodeA);
            TetradLogger.getInstance()
                .log("insertedEdges", "Adding edge by knowledge: " + graph.getEdge(nodeB, nodeA));
          }
        }
        if (!graph.isChildOf(nodeA, nodeB)
            && getKnowledge().isForbidden(nodeA.getName(), nodeB.getName())) {
          if (!graph.isAncestorOf(nodeA, nodeB)) {
            graph.removeEdges(nodeA, nodeB);
            graph.addDirectedEdge(nodeB, nodeA);
            TetradLogger.getInstance()
                .log("insertedEdges", "Adding edge by knowledge: " + graph.getEdge(nodeB, nodeA));
          }
        }
      } else if (knowledge.isForbidden(B, A)) {
        Node nodeA = edge.getNode2();
        Node nodeB = edge.getNode1();

        if (nodeA != null
            && nodeB != null
            && graph.isAdjacentTo(nodeA, nodeB)
            && !graph.isChildOf(nodeA, nodeB)) {
          if (!graph.isAncestorOf(nodeA, nodeB)) {
            graph.removeEdges(nodeA, nodeB);
            graph.addDirectedEdge(nodeB, nodeA);
            TetradLogger.getInstance()
                .log("insertedEdges", "Adding edge by knowledge: " + graph.getEdge(nodeB, nodeA));
          }
        }
        if (!graph.isChildOf(nodeA, nodeB)
            && getKnowledge().isForbidden(nodeA.getName(), nodeB.getName())) {
          if (!graph.isAncestorOf(nodeA, nodeB)) {
            graph.removeEdges(nodeA, nodeB);
            graph.addDirectedEdge(nodeB, nodeA);
            TetradLogger.getInstance()
                .log("insertedEdges", "Adding edge by knowledge: " + graph.getEdge(nodeB, nodeA));
          }
        }
      }
    }
  }